BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII12R
         (690 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2982975 (AE000681) hypothetical protein [Aquifex aeolicus]          32  3.1
gi|3845174 (AE001392) PfS230 paralog (predicted secreted protein...    32  4.1
gi|3758843|emb|CAB11128| (Z98551) predicted using hexExon; MAL3P...    31  7.0
gi|2702395 (AF038608) No definition line found [Caenorhabditis e...    31  7.0
gi|2688577 (AE001166) serine/threonine kinase, putative [Borreli...    31  9.1
gi|3661535 (AF090118) heat shock protein hsp104 [Plasmodium falc...    31  9.1


>gi|2982975 (AE000681) hypothetical protein [Aquifex aeolicus]
           Length = 338
           
 Score = 32.5 bits (72), Expect = 3.1
 Identities = 23/86 (26%), Positives = 41/86 (46%), Gaps = 1/86 (1%)

Query: 397 NLTSN*MSKGFNQIA*DYEDF-ILQTIISYFKKIENNINDYYNTSIHHISLKILESSTKK 573
           N+ SN + +   +++   ED   L+  + + KKI N +ND  N       +    S + K
Sbjct: 58  NILSNILIRELERVSEKKEDIKFLRRELKFLKKIRNRLNDLTNLEKRDAYI----SLSGK 113

Query: 574 IVKY*NTLRTEMNILKVQPGKSNEKIK 654
            ++Y   LR  +N+LK    K  E ++
Sbjct: 114 RIRYKKVLRDTLNLLKDLKAKLIENVE 140



>gi|3845174 (AE001392) PfS230 paralog (predicted secreted protein) [Plasmodium
            falciparum]
            Length = 2496
            
 Score = 32.1 bits (71), Expect = 4.1
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 463  LQTIISYFKKIENNINDYYNT----SIHHISLKILESSTKKIVKY*NTLRTEMNILKVQP 630
            +Q ++  + KI   ++D YNT    +   I LK+ +   KK  KY + L+ ++N  K + 
Sbjct: 1600 VQNVLERYLKI---LSDLYNTHEEFTYFSIHLKLKKEIMKK--KYIDYLKKKINEYKEK- 1653

Query: 631  GKSNEKIKDITLQINDKV 684
             ++++KIK +TL  ND +
Sbjct: 1654 -ETSDKIKRVTLSTNDNI 1670



>gi|3758843|emb|CAB11128| (Z98551) predicted using hexExon; MAL3P6.23 (PFC0820w), Hypothetical
            protein, len: 4982 aa [Plasmodium falciparum]
            Length = 4981
            
 Score = 31.3 bits (69), Expect = 7.0
 Identities = 25/96 (26%), Positives = 44/96 (45%)

Query: 382  VISTYNLTSN*MSKGFNQIA*DYEDFILQTIISYFKKIENNINDYYNTSIHHISLKILES 561
            VIS +++TSN      N I   +   +  +I +   +  N   D + +++ +I +K  E 
Sbjct: 4475 VISDFHITSN------NNITRSFTATLTDSIFNTLSETLNYSYDNFFSNMDNIKIKKNEI 4528

Query: 562  STKKIVKY*NTLRTEMNILKVQPGKSNEKIKDITLQ 669
            +    V Y N      N LKV+  K NE+  + T +
Sbjct: 4529 NNITDVDYGNKKEYHENYLKVKQNKVNEEYIEETFK 4564



>gi|2702395 (AF038608) No definition line found [Caenorhabditis elegans]
           Length = 606
           
 Score = 31.3 bits (69), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 117 KRSSYRDNSFNFPIIFLAWFTFTNHFLKLFISYIF 13
           K S      F+ P I++ W +   HF+K FISY++
Sbjct: 294 KLSQLTSAQFHSPHIYIFWQSIVVHFIKEFISYLY 328



>gi|2688577 (AE001166) serine/threonine kinase, putative [Borrelia burgdorferi]
           Length = 562
           
 Score = 30.9 bits (68), Expect = 9.1
 Identities = 24/85 (28%), Positives = 46/85 (53%)

Query: 427 FNQIA*DYEDFILQTIISYFKKIENNINDYYNTSIHHISLKILESSTKKIVKY*NTLRTE 606
           F +I   Y++  L+  + Y K +ENN+   ++  I ++    L +   +I K+ N+L+ +
Sbjct: 189 FYEIKETYDNQELKNFLLYLKALENNL---HSIKIQNLEGSKLTTELLEIPKF-NSLKEQ 244

Query: 607 MNILKVQPGKSNEKIKDITLQINDK 681
             I+  Q    N+++KD   QIN+K
Sbjct: 245 EPIINFQ----NKRLKD--YQINEK 263



>gi|3661535 (AF090118) heat shock protein hsp104 [Plasmodium falciparum]
           Length = 752
           
 Score = 30.9 bits (68), Expect = 9.1
 Identities = 20/75 (26%), Positives = 37/75 (48%)

Query: 463 LQTIISYFKKIENNINDYYNTSIHHISLKILESSTKKIVKY*NTLRTEMNILKVQPGKSN 642
           LQT++S  K+++   ND Y  SI H+ L I+   +K    +   L+  +N  K++  + N
Sbjct: 96  LQTVLSTSKRLKKEFNDEY-ISIEHLLLSIISEDSKFTRPW--LLKYNVNYEKLKSCRKN 152

Query: 643 EKIKDITLQINDKVY 687
            + K    +  +  Y
Sbjct: 153 SRKKKSYFKTPEMTY 167


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118516558
Number of Sequences: 369800
Number of extensions: 2239211
Number of successful extensions: 5276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5272
Number of HSP's gapped (non-prelim): 9
length of query: 230
length of database: 113023754
effective HSP length: 53
effective length of query: 176
effective length of database: 93424354
effective search space: 16442686304
effective search space used: 16442686304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)