BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII-4R
         (608 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1118049 (U41550) similar to homeobox proteins and to human ce...    32  4.5
gi|323106|pir||A44396 P-type cation translocating ATPase - Plasm...    31  7.7
gi|9872|emb|CAA46646| (X65738) ATPase I [Plasmodium falciparum]        31  7.7


>gi|1118049 (U41550) similar to homeobox proteins and to human centromeric
           protein E (SP:CENE_HUMAN,Q02224) and to ribosomal
           protein S6 kinase [Caenorhabditis elegans]
           Length = 780
           
 Score = 31.7 bits (70), Expect = 4.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 150 IFDKYNVKEKINLTKEQYIKYINRINYEISILRNKIKNYR-AEQNNKRIEF 1
           +    NVK  + LT+E+  KY  ++     +L NK+K YR  ++N   IEF
Sbjct: 360 VMPNLNVKSDMVLTEEEIKKYNGKVLALHRLLSNKVKKYRKLDENVDYIEF 410



>gi|323106|pir||A44396 P-type cation translocating ATPase - Plasmodium falciparum
            Length = 1984
            
 Score = 30.9 bits (68), Expect = 7.7
 Identities = 18/59 (30%), Positives = 36/59 (60%), Gaps = 11/59 (18%)

Query: 186  ITKKEYFFKMHNIFDKYNVKEKINL-----------TKEQYIKYINRINYEISILRNKIK 40
            I  K Y +  +NI++K N+  K N+           + ++++K+ + I     I R+K+K
Sbjct: 1565 ICNKNYIYNKNNIYNKNNIYNKKNILTHAKSVLLSGSSKKFLKFFSNI-----IRRHKLK 1619

Query: 39   NYRAEQNNKR 10
              + ++N KR
Sbjct: 1620 EKKNKKNIKR 1629



>gi|9872|emb|CAA46646| (X65738) ATPase I [Plasmodium falciparum]
            Length = 1956
            
 Score = 30.9 bits (68), Expect = 7.7
 Identities = 18/59 (30%), Positives = 36/59 (60%), Gaps = 11/59 (18%)

Query: 186  ITKKEYFFKMHNIFDKYNVKEKINL-----------TKEQYIKYINRINYEISILRNKIK 40
            I  K Y +  +NI++K N+  K N+           + ++++K+ + I     I R+K+K
Sbjct: 1537 ICNKNYIYNKNNIYNKNNIYNKKNILTHAKSVLLSGSSKKFLKFFSNI-----IRRHKLK 1591

Query: 39   NYRAEQNNKR 10
              + ++N KR
Sbjct: 1592 EKKNKKNIKR 1601


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59638350
Number of Sequences: 368476
Number of extensions: 685905
Number of successful extensions: 2635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2635
Number of HSP's gapped (non-prelim): 3
length of query: 202
length of database: 112640273
effective HSP length: 53
effective length of query: 149
effective length of database: 93111045
effective search space: 13873545705
effective search space used: 13873545705
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)