BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII-3R
(705 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|556219 (L36831) transcription regulator [Mus musculus] 39 0.032
gi|2137221|pir||I61713 co-repressor protein - mouse >gi|642619 (... 39 0.042
gi|726286 (U22394) mSin3A [Mus musculus] 39 0.042
gi|2137220|pir||A56068 co-repressor protein - mouse >gi|642617 (... 39 0.042
gi|172094 (M36822) SIN3 open reading frame [Saccharomyces cerevi... 38 0.072
gi|2507475|sp|P22579|SIN3_YEAST PAIRED AMPHIPATHIC HELIX PROTEIN... 38 0.072
gi|1175429|sp|Q09750|YB6A_SCHPO HYPOTHETICAL 171.5 KD PROTEIN C1... 37 0.16
gi|3327214|dbj|BAA31675| (AB014600) KIAA0700 protein [Homo sapiens] 36 0.37
gi|224859|prf||1202270A antigen,major surface [Plasmodium falcip... 35 0.63
gi|72393|pir||SAZQK1 major merozoite surface antigen precursor -... 35 0.63
gi|2194132 (AC002062) No definition line found [Arabidopsis thal... 35 0.63
gi|3821963 (AF061135) merozoite surface protein 1 [Plasmodium fa... 35 0.63
gi|309708 (M77720) major merozoite surface antigen [Plasmodium f... 35 0.63
gi|2137222|pir||I61714 co-repressor protein - mouse >gi|642621 (... 35 0.63
gi|3821961 (AF061134) merozoite surface protein 1 [Plasmodium fa... 35 0.63
gi|2194112 (U81495) unknown [Oxytricha fallax] 34 0.82
gi|4493949|emb|CAB38985| (AL034556) predicted using hexExon; MAL... 34 1.1
gi|2313297|gb|AAD07276| (AE000540) H. pylori predicted coding re... 33 1.9
gi|2330779|emb|CAB11171| (Z98559) SPAC23C11.15; len:1041aa, some... 32 4.2
gi|3043923 (AF036004) hyaluronan synthase [Pasteurella multocida] 32 5.4
gi|3877275|emb|CAB01197| (Z77662) predicted using Genefinder [Ca... 32 5.4
gi|3435187 (AF067175) glycosyl transferase [Pasteurella multocida] 32 5.4
gi|3983663|dbj|BAA34861| (AB011270) importin-beta1 [Oryza sativa] 32 5.4
gi|3256949|dbj|BAA29632| (AP000002) 318aa long hypothetical prot... 31 7.1
gi|3874308|emb|CAA99779| (Z75527) predicted using Genefinder; Si... 31 7.1
gi|3800920 (AF100307) No definition line found [Caenorhabditis e... 31 7.1
>gi|556219 (L36831) transcription regulator [Mus musculus]
Length = 1282
Score = 39.1 bits (89), Expect = 0.032
Identities = 20/76 (26%), Positives = 45/76 (58%), Gaps = 2/76 (2%)
Query: 323 KSNKIAVELGLQK--EIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFL 496
KS+ A++L L++ +++ + Y LD +R+ + +ID+ +YE+ +R Y F
Sbjct: 938 KSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRQLLDGNIDSSQYEDSLREMFTIHAYIAFT 997
Query: 497 IDKQLEKLEKEIITIMKD 550
+DK ++ + +++ I+ D
Sbjct: 998 MDKLIQSIVRQLQHIVSD 1015
>gi|2137221|pir||I61713 co-repressor protein - mouse >gi|642619 (L38620) mSin3A gene product
[Mus musculus]
Length = 1219
Score = 38.7 bits (88), Expect = 0.042
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 323 KSNKIAVELGLQK--EIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFL 496
KS+ A++L L++ +++ + Y LD +R + +ID+ +YE+ +R Y F
Sbjct: 938 KSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYEDSLREMFTIHAYIAFT 997
Query: 497 IDKQLEKLEKEIITIMKD 550
+DK ++ + +++ I+ D
Sbjct: 998 MDKLIQSIVRQLQHIVSD 1015
>gi|726286 (U22394) mSin3A [Mus musculus]
Length = 1274
Score = 38.7 bits (88), Expect = 0.042
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 323 KSNKIAVELGLQK--EIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFL 496
KS+ A++L L++ +++ + Y LD +R + +ID+ +YE+ +R Y F
Sbjct: 938 KSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYEDSLREMFTIHAYIAFT 997
Query: 497 IDKQLEKLEKEIITIMKD 550
+DK ++ + +++ I+ D
Sbjct: 998 MDKLIQSIVRQLQHIVSD 1015
>gi|2137220|pir||A56068 co-repressor protein - mouse >gi|642617 (L38621) mSin3A9 gene product
[Mus musculus]
Length = 1229
Score = 38.7 bits (88), Expect = 0.042
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 323 KSNKIAVELGLQK--EIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFL 496
KS+ A++L L++ +++ + Y LD +R + +ID+ +YE+ +R Y F
Sbjct: 938 KSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYEDSLREMFTIHAYIAFT 997
Query: 497 IDKQLEKLEKEIITIMKD 550
+DK ++ + +++ I+ D
Sbjct: 998 MDKLIQSIVRQLQHIVSD 1015
>gi|172094 (M36822) SIN3 open reading frame [Saccharomyces cerevisiae]
Length = 1538
Score = 37.9 bits (86), Expect = 0.072
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 242 NFSIFLKTFASLYNR---VKXVKXNCTSELKSNKIAV-------------ELGLQKEIES 373
N IF + + ++Y R +K + T E+ + E+GL +
Sbjct: 1145 NIYIFFRHWTTIYERLLEIKQMNERVTKEINTRSTVTFAKDLDLLSSQLSEMGL--DFVG 1202
Query: 374 QGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLIDKQLEKLEKEIITIMKDN 553
+ Y L R+ I ++ +EE +R K + L+ IDK + L K T+M D
Sbjct: 1203 EDAYKQVLRLSRRLINGDLEHQWFEESLRQAYNNKAFKLYTIDKVTQSLVKHAHTLMTDA 1262
Query: 554 EIXNI 568
+ I
Sbjct: 1263 KTAEI 1267
>gi|2507475|sp|P22579|SIN3_YEAST PAIRED AMPHIPATHIC HELIX PROTEIN >gi|2144973|pir||RGBYS3 regulatory
protein SIN3 - yeast (Saccharomyces cerevisiae)
>gi|1419767|emb|CAA99003| (Z74746) ORF YOL004w
[Saccharomyces cerevisiae]
Length = 1536
Score = 37.9 bits (86), Expect = 0.072
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 242 NFSIFLKTFASLYNR---VKXVKXNCTSELKSNKIAV-------------ELGLQKEIES 373
N IF + + ++Y R +K + T E+ + E+GL +
Sbjct: 1143 NIYIFFRHWTTIYERLLEIKQMNERVTKEINTRSTVTFAKDLDLLSSQLSEMGL--DFVG 1200
Query: 374 QGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLIDKQLEKLEKEIITIMKDN 553
+ Y L R+ I ++ +EE +R K + L+ IDK + L K T+M D
Sbjct: 1201 EDAYKQVLRLSRRLINGDLEHQWFEESLRQAYNNKAFKLYTIDKVTQSLVKHAHTLMTDA 1260
Query: 554 EIXNI 568
+ I
Sbjct: 1261 KTAEI 1265
>gi|1175429|sp|Q09750|YB6A_SCHPO HYPOTHETICAL 171.5 KD PROTEIN C12C2.10C IN CHROMOSOME II
>gi|984217|emb|CAA90823| (Z54140) putative paired
amphipatic helix protein [Schizosaccharomyces pombe]
Length = 1522
Score = 36.7 bits (83), Expect = 0.16
Identities = 23/105 (21%), Positives = 54/105 (50%), Gaps = 15/105 (14%)
Query: 254 FLKTFASLYNRVKXVKX------NCTSELKSNKIAVELGLQKEIE---------SQGRYN 388
F + F +LY+R++ +K + ++KSN +AVELGL + + Y
Sbjct: 1013 FFRLFHTLYSRLEEIKNLEQMAYSKQHDVKSNPVAVELGLVRHPSERLGFALPTADTVYE 1072
Query: 389 DCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLIDKQLEKLEKEIITIMKDNEIXNI 568
+ + + ID +E+ +R + L+ ++K + + K++ ++ + + +
Sbjct: 1073 QAIQLCERLMEGEIDQNGFEDALRCLYGIHAFRLYTVEKLVTSIIKQLHSVTTNRRLAQV 1132
>gi|3327214|dbj|BAA31675| (AB014600) KIAA0700 protein [Homo sapiens]
Length = 1130
Score = 35.6 bits (80), Expect = 0.37
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 323 KSNKIAVELGLQK--EIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFL 496
K + A+EL L++ E+E + Y LD +R + ID +YE+ +R Y F
Sbjct: 794 KGSDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFT 853
Query: 497 IDKQLEKLEKEIITIMKDN 553
+DK ++ + +++ ++ D+
Sbjct: 854 MDKLVQNIARQLHHLVSDD 872
>gi|224859|prf||1202270A antigen,major surface [Plasmodium falciparum]
Length = 1631
Score = 34.8 bits (78), Expect = 0.63
Identities = 26/93 (27%), Positives = 50/93 (52%), Gaps = 7/93 (7%)
Query: 320 LKSNKIAVELGLQKEIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLI 499
+K N +E ++K ++ N+ ++ +K I + + + EE+ +++ YDLF+
Sbjct: 222 IKDNVGKMEDYIKKNKKTIENINELIEESKKTIDKNKNATKEEEKKKLYQAQ--YDLFIY 279
Query: 500 DKQLEK-------LEKEIITIMKDNEIXNIXSSDYILKAP 598
+KQLE+ LEK I T+ K+ I + +K P
Sbjct: 280 NKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEIKNP 319
>gi|72393|pir||SAZQK1 major merozoite surface antigen precursor - Plasmodium falciparum
(strain K1/Thai)
Length = 1631
Score = 34.8 bits (78), Expect = 0.63
Identities = 26/93 (27%), Positives = 50/93 (52%), Gaps = 7/93 (7%)
Query: 320 LKSNKIAVELGLQKEIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLI 499
+K N +E ++K ++ N+ ++ +K I + + + EE+ +++ YDLF+
Sbjct: 222 IKDNVGKMEDYIKKNKKTIENINELIEESKKTIDKNKNATKEEEKKKLYQAQ--YDLFIY 279
Query: 500 DKQLEK-------LEKEIITIMKDNEIXNIXSSDYILKAP 598
+KQLE+ LEK I T+ K+ I + +K P
Sbjct: 280 NKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEIKNP 319
>gi|2194132 (AC002062) No definition line found [Arabidopsis thaliana]
Length = 1383
Score = 34.8 bits (78), Expect = 0.63
Identities = 23/95 (24%), Positives = 41/95 (42%)
Query: 242 NFSIFLKTFASLYNRVKXVKXNCTSELKSNKIAVELGLQKEIESQGRYNDCLDAMRKYIF 421
+F + + LY+R+ K N +S + K + Y +DA+ +
Sbjct: 1091 SFYVLFRLHQILYDRILSAKINSSSPDRKWKTS------NPTNPADSYARIMDALYNLLD 1144
Query: 422 XHIDTMEYEEEIRIFTETKGYDLFLIDKQLEKLEK 526
D ++E++ R T+ Y LF +DK + KL K
Sbjct: 1145 GTSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLIK 1179
>gi|3821963 (AF061135) merozoite surface protein 1 [Plasmodium falciparum]
Length = 362
Score = 34.8 bits (78), Expect = 0.63
Identities = 26/93 (27%), Positives = 50/93 (52%), Gaps = 7/93 (7%)
Query: 320 LKSNKIAVELGLQKEIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLI 499
+K N +E ++K ++ N+ ++ +K I + + + EE+ +++ YDLF+
Sbjct: 222 IKDNVGKMEDYIKKNKKTIENINELIEESKKTIDKNKNATKEEEKKKLYQAQ--YDLFIY 279
Query: 500 DKQLEK-------LEKEIITIMKDNEIXNIXSSDYILKAP 598
+KQLE+ LEK I T+ K+ I + +K P
Sbjct: 280 NKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEIKNP 319
>gi|309708 (M77720) major merozoite surface antigen [Plasmodium falciparum]
>gi|309733 (M77733) major merozoite surface antigen
[Plasmodium falciparum]
Length = 213
Score = 34.8 bits (78), Expect = 0.63
Identities = 26/93 (27%), Positives = 50/93 (52%), Gaps = 7/93 (7%)
Query: 320 LKSNKIAVELGLQKEIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLI 499
+K N +E ++K ++ N+ ++ +K I + + + EE+ +++ YDLF+
Sbjct: 78 IKDNVGKMEDYIKKNKKTIENINELIEESKKTIDKNKNATKEEEKKKLYQAQ--YDLFIY 135
Query: 500 DKQLEK-------LEKEIITIMKDNEIXNIXSSDYILKAP 598
+KQLE+ LEK I T+ K+ I + +K P
Sbjct: 136 NKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEIKNP 175
>gi|2137222|pir||I61714 co-repressor protein - mouse >gi|642621 (L38622) mSin3B gene
product [Mus musculus]
Length = 954
Score = 34.8 bits (78), Expect = 0.63
Identities = 20/72 (27%), Positives = 40/72 (54%), Gaps = 2/72 (2%)
Query: 338 AVELGLQK--EIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLIDKQL 511
A+EL L++ E+E + Y LD +R + ID +YE+ +R Y F +DK +
Sbjct: 768 AMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYIGFTMDKLV 827
Query: 512 EKLEKEIITIMKDN 553
+ + +++ ++ D+
Sbjct: 828 QNIARQLHHLVSDD 841
>gi|3821961 (AF061134) merozoite surface protein 1 [Plasmodium falciparum]
Length = 347
Score = 34.8 bits (78), Expect = 0.63
Identities = 26/93 (27%), Positives = 50/93 (52%), Gaps = 7/93 (7%)
Query: 320 LKSNKIAVELGLQKEIESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLI 499
+K N +E ++K ++ N+ ++ +K I + + + EE+ +++ YDLF+
Sbjct: 222 IKDNVGKMEDYIKKNKKTIENINELIEESKKTIDKNKNATKEEEKKKLYQAQ--YDLFIY 279
Query: 500 DKQLEK-------LEKEIITIMKDNEIXNIXSSDYILKAP 598
+KQLE+ LEK I T+ K+ I + +K P
Sbjct: 280 NKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEIKNP 319
>gi|2194112 (U81495) unknown [Oxytricha fallax]
Length = 1088
Score = 34.4 bits (77), Expect = 0.82
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 284 RVKXVKXNCTSELKSNKIAVELGLQKEIESQGRYND----CLDAMRKYIFXHIDTMEYEE 451
+++ +K CT ++L QKE E R D LD+ K I + E
Sbjct: 548 QIQNMKNECTLIFDQKVSQIQLESQKENERIRRECDDLKYTLDSKVKSIELEYIKISKHE 607
Query: 452 EIRIFTETKGYDLFLIDK---QLEKLEKEIITIMKDNEIXNIXSSDYILKAPVYTLKKDH 622
EI + +E + + L DK E+++ EI+ +++ E+ SS LKA L++D
Sbjct: 608 EI-LNSELQNCESTLTDKIKKVKEQMQNEIVQRLEEKELEREKSSQSQLKAIKAQLEQDK 666
Query: 623 T-TIHLSKINTKDQFDEYVK 679
T + ++ + QFD +K
Sbjct: 667 TQALQEMELKMQKQFDWQLK 686
>gi|4493949|emb|CAB38985| (AL034556) predicted using hexExon; MAL3P5.23 (PFC0695w),
Hypothetical protein, len: 244 aa [Plasmodium
falciparum]
Length = 243
Score = 34.0 bits (76), Expect = 1.1
Identities = 45/175 (25%), Positives = 77/175 (43%), Gaps = 18/175 (10%)
Query: 167 DDFKMFVNNFXIFLXLEKLDKLXSFNFSIFLKTFASLYNRVKXVKXNCTSELKSNKIAVE 346
DD K ++N + +++ K+ F LK+ + + NC SE K +
Sbjct: 25 DDIKKKISNIDVNNIHDEVVKILKFEK---LKSIIDIRTTI----LNCLSESVKMKYIIH 77
Query: 347 LGLQKEIESQGRYND-CLDAMRKYIF-XHIDTMEYEEEIRIFTET------KGYDLFLID 502
L L +E +YN+ C RK+ F HID EY+ +I E + Y F ++
Sbjct: 78 LSLPSIVEEVTKYNEFCSSLERKFSFLSHIDD-EYKIKIESCRENTTDKIIENYFFFHLN 136
Query: 503 KQLEKL-----EKEIITIMKDNEIXNIXSSDYILKAPVYTLKKDHTTIHLSKINT----- 652
+ + K I ++ NEI + Y + HT + + + T
Sbjct: 137 -DINTIVGIYRNKPNIMFLRFNEITHCLEEFYQKITNPFDEHVKHTELFKTFMKTYKKPP 195
Query: 653 KDQFDEYVKCFXD 691
K + +Y+K F D
Sbjct: 196 KSNYVDYLKAFLD 208
>gi|2313297|gb|AAD07276| (AE000540) H. pylori predicted coding region HP0205 [Helicobacter
pylori 26695]
Length = 793
Score = 33.2 bits (74), Expect = 1.9
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 218 KLDKLXSFNFSIFLKTFASLYNR--VKXVKXNCTSELKSNKIA-----VELGLQKEIESQ 376
K K F++ + L + + V + + ++KS ++L EIE Q
Sbjct: 179 KNQKTLEFDYDVLLDNIQQICKKYIASHVVNDASKDIKSMMCQFYLEKIDLLFNSEIE-Q 237
Query: 377 GRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKG--YDLFLIDKQLEKLEK 526
RY+D L++ RK+++ I T++ + + +F + G D F +K+ K K
Sbjct: 238 YRYSDFLESARKFLWEDIKTLDEKSGVHLFPKNIGEIKDKFETNKEKFKQSK 289
>gi|2330779|emb|CAB11171| (Z98559) SPAC23C11.15; len:1041aa, some similarity eg. to YOL004W,
SIN3_YEAST, P22579, paired amphipathic helix protein,
(1536aa), fasta scores, opt:785, E():0, (25.9% identity
in 1036 aa overlap) [Schizosaccharomyces pombe]
Length = 1075
Score = 32.1 bits (71), Expect = 4.2
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 251 IFLKTFASLYNRVKXV-KXNCTSELKSNKIAVELGLQKEIESQGRYNDCLDA-------- 403
+F + F LY R+ + + + +I QK+ + R+ND D
Sbjct: 751 VFFRLFNLLYERLYELQRLEDQVSIIQQRIIPNPVSQKQKIWRDRWNDLSDVPDEKTHYE 810
Query: 404 -----MRKYIFXHIDTMEYEEEIRIFTETKGYDLFLIDKQLEKLEKEIITIMKDNEIXNI 568
+ + I+ +D +E+ +R + K Y ++ IDK + K++ I+ D + +
Sbjct: 811 NTYVMILRLIYGIVDQSAFEDYLRFYYGNKAYKIYTIDKLVWSAAKQVHHIVSDGKYKFV 870
Query: 569 XS 574
S
Sbjct: 871 TS 872
>gi|3043923 (AF036004) hyaluronan synthase [Pasteurella multocida]
Length = 972
Score = 31.7 bits (70), Expect = 5.4
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 191 NFXIFLXLEKLDKLXSFNFSIFLKTFASLYNRVKXVKXNCTSEL----KSNKIAVELGLQ 358
++ +FL L ++ K N YNRV +L K++ + V L
Sbjct: 613 DYDMFLKLSEVGKFKHLN--------KICYNRVLHGDNTSIKKLGIQKKNHFVVVNQSLN 664
Query: 359 KEIESQGRYN--DCLDAMRKYIFXHIDTMEYEEEIRIFTETK 478
++ + Y+ D LD RKYIF T EY+EEI I + K
Sbjct: 665 RQGITYYNYDEFDDLDESRKYIFNK--TAEYQEEIDILKDIK 704
>gi|3877275|emb|CAB01197| (Z77662) predicted using Genefinder [Caenorhabditis elegans]
Length = 349
Score = 31.7 bits (70), Expect = 5.4
Identities = 21/53 (39%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Query: 515 KLEKEIITIMKDNEIXNIXSSDYILKAPVYT-LKKDHTTIHLSKINTKDQFDEY 673
KL K+++T+ K E+ + S+ YIL APV+T + D + L +NT QF+ Y
Sbjct: 60 KLFKKVMTVTKLVEM--LFSASYILTAPVFTSISVDDSFTGLMIVNTGWQFNFY 111
>gi|3435187 (AF067175) glycosyl transferase [Pasteurella multocida]
Length = 864
Score = 31.7 bits (70), Expect = 5.4
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 191 NFXIFLXLEKLDKLXSFNFSIFLKTFASLYNRVKXVKXNCTSEL----KSNKIAVELGLQ 358
++ +FL L ++ K N YNRV +L K++ + V L
Sbjct: 613 DYDMFLKLSEVGKFKHLN--------KICYNRVLHGDNTSIKKLGIQKKNHFVVVNQSLN 664
Query: 359 KEIESQGRYN--DCLDAMRKYIFXHIDTMEYEEEIRIFTETK 478
++ + Y+ D LD RKYIF T EY+EEI I + K
Sbjct: 665 RQGITYYNYDEFDDLDESRKYIFNK--TAEYQEEIDILKDIK 704
>gi|3983663|dbj|BAA34861| (AB011270) importin-beta1 [Oryza sativa]
Length = 868
Score = 31.7 bits (70), Expect = 5.4
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 257 LKTFASLYNRVKXVKXNCTSELKSN---KIAVELGLQKEIESQGRYNDCLDAMRKYIFXH 427
L +LYN + + N +E++ N K+ + + KE+E + +CL A+ + H
Sbjct: 194 LAAVKALYNALDFAESNFANEMERNYIMKVICDTAVSKEVEIRQAAFECLVAIASTYYVH 253
Query: 428 ID 433
+D
Sbjct: 254 LD 255
>gi|3256949|dbj|BAA29632| (AP000002) 318aa long hypothetical protein [Pyrococcus horikoshii]
Length = 318
Score = 31.3 bits (69), Expect = 7.1
Identities = 28/123 (22%), Positives = 55/123 (43%), Gaps = 1/123 (0%)
Query: 188 NNFXIFLXLEKLDKLXSFNFSIFLKTFASLYNRVKXVKXNCTSELKSNKIAVELG-LQKE 364
NN + L+K D L N + K L NR + ++ K + E+ ++K+
Sbjct: 168 NNINLKEFLDKYDSLVRENVELKRK----LENRERIIRELRDKLAKMQESVKEVEEIEKK 223
Query: 365 IESQGRYNDCLDAMRKYIFXHIDTMEYEEEIRIFTETKGYDLFLIDKQLEKLEKEIITIM 544
+ G+ + + +R + + + +E +RI F+ ++E+L K I +M
Sbjct: 224 VSEYGKLAEDMKEVRVRLAKITGSYDLKEALRIIENN-----FIPKSRVEELAKSIKNLM 278
Query: 545 KDNE 556
K+NE
Sbjct: 279 KENE 282
>gi|3874308|emb|CAA99779| (Z75527) predicted using Genefinder; Similarity to Human
alpha-2-macroglobulin receptor-associated protein
(SW:AMRP_HUMAN); cDNA EST yk329h1.5 comes from this
gene; cDNA EST yk329h1.3 comes from this gene
[Caenorhabditis elegans]
Length = 331
Score = 31.3 bits (69), Expect = 7.1
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 3/73 (4%)
Query: 332 KIAVELGLQKEIESQGRYNDCLDAMRKYIFXHIDTMEYE---EEIRIFTETKGYDLFLID 502
K+ E +Q +IES G L A + + H+D + + EE F E + L+ +
Sbjct: 171 KVPHENSIQHDIESIGDKTKKLKAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLA 230
Query: 503 KQLEKLEKEIITIMKD 550
++ EKL ++++KD
Sbjct: 231 QENEKLTPHELSVLKD 246
>gi|3800920 (AF100307) No definition line found [Caenorhabditis elegans]
Length = 207
Score = 31.3 bits (69), Expect = 7.1
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 464 FTETKGYDLFLIDKQLEKLE------KEIIT------------IMKDNEIXNIXSSDYIL 589
F E G D ++ K +K+E I+T ++KD ++ N+ D +
Sbjct: 97 FVERAGKDFKIVSKHAQKIEIFNSNDDNIVTTLNEFLKFETCILVKDVKLWNLSLDDVLT 156
Query: 590 KAPVYTLKKDHTTIHLSKINTKDQFDEYVKCFXDMNVD 703
P + K + TI L +NT + + KCF VD
Sbjct: 157 NLPRFNAK-ELKTIKLEWVNTMIVYFFHFKCFNIHQVD 193
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101826977
Number of Sequences: 368476
Number of extensions: 1596075
Number of successful extensions: 4176
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4163
Number of HSP's gapped (non-prelim): 29
length of query: 235
length of database: 112640273
effective HSP length: 53
effective length of query: 181
effective length of database: 93111045
effective search space: 16853099145
effective search space used: 16853099145
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)