BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII-3F
(589 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|732189|sp|P40160|YNU7_YEAST HYPOTHETICAL 49.1 KD PROTEIN IN S... 57 1e-07
gi|2128653|pir||H64433 hypothetical protein MJ1073 - Methanococc... 41 0.005
gi|2650662 (AE001107) conserved hypothetical protein [Archaeoglo... 40 0.011
gi|549821|sp|Q03021|YRP3_THEAC HYPOTHETICAL 21.7 KD PROTEIN IN R... 39 0.033
gi|2500509|sp|Q57886|Y444_METJA HYPOTHETICAL PROTEIN MJ0444 >gi|... 38 0.044
gi|2622106 (AE000873) conserved protein [Methanobacterium thermo... 36 0.17
gi|1172519|sp|P42493|PK1_ASFB7 SERINE/THREONINE-PROTEIN KINASE >... 34 0.65
gi|1181445 (U42580) similar to PBCV-1 ORF A34R, corresponds to G... 34 1.1
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 34 1.1
gi|462463|sp|P34206|PK1_ASFM2 SERINE/THREONINE-PROTEIN KINASE >g... 34 1.1
gi|3256917|dbj|BAA29600| (AP000002) 313aa long hypothetical prot... 32 2.5
gi|3687501|emb|CAA21169| (AL031788) nucleosome assembly protein ... 32 4.3
gi|1749750|dbj|BAA13932| (D89271) similar to Saccharomyces cerev... 32 4.3
>gi|732189|sp|P40160|YNU7_YEAST HYPOTHETICAL 49.1 KD PROTEIN IN SSB2-SPX18 INTERGENIC REGION
>gi|2131922|pir||S50724 hypothetical protein YNL207w -
yeast (Saccharomyces cerevisiae)
>gi|600058|emb|CAA55501| (X78898) N1342 [Saccharomyces
cerevisiae] >gi|1302211|emb|CAA96109| (Z71483) ORF
YNL207w [Saccharomyces cerevisiae]
Length = 425
Score = 57.0 bits (135), Expect = 1e-07
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 10 IYNQMIDFMVNLYGRGYVHGDXNEFNCMXKGN-------EIIVIDFPQCVKIEDIYADKY 168
+Y+ ++ F+V+L G +H D NEFN M K +VIDFPQC+ I+ AD Y
Sbjct: 209 LYSDLMCFIVDLANSGLIHCDFNEFNIMIKDKLEDENDCGFVVIDFPQCISIQHQDADYY 268
Query: 169 LLRDFECI 192
RD +CI
Sbjct: 269 FQRDVDCI 276
>gi|2128653|pir||H64433 hypothetical protein MJ1073 - Methanococcus jannaschii >gi|1499920
(U67550) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 270
Score = 41.4 bits (95), Expect = 0.005
Identities = 21/57 (36%), Positives = 35/57 (60%), Gaps = 1/57 (1%)
Query: 10 IYNQMIDFMVNLYGRGYVHGDXNEFNCMXKGN-EIIVIDFPQCVKIEDIYADKYLLRD 180
++ ++I+ + Y GY+HGD +EFN + N + ++ID+PQ V A+ YL RD
Sbjct: 182 LFWKIIEEVKKAYEIGYIHGDLSEFNILLDENGDFVIIDWPQAVPKYHPDAEFYLKRD 239
>gi|2650662 (AE001107) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 282
Score = 40.2 bits (92), Expect = 0.011
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 10 IYNQMIDFMVNLYGRGYVHGDXNEFNCMXKGNEIIVIDFPQCVKIEDIYADKYLLRD 180
+ + +++ + Y RG VHGD +++N + I +IDFPQ V++ + + L RD
Sbjct: 198 VLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEGIWIIDFPQSVEVGEEGWREILERD 254
>gi|549821|sp|Q03021|YRP3_THEAC HYPOTHETICAL 21.7 KD PROTEIN IN RPOA2 3'REGION (ORF186)
>gi|280362|pir||S26727 hypothetical protein 186 (rpoA2
3' region) - Thermoplasma acidophilum
>gi|809776|emb|CAA48285| (X68198) ORF186 [Thermoplasma
acidophilum]
Length = 186
Score = 38.7 bits (88), Expect = 0.033
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 4 EIIYNQMIDFMVNLYGRGYVHGDXNEFNCMXKGNEIIVIDFPQCVKIEDIYADKYLLRD 180
E IY+Q+ID M +Y VH D +E+N M ++ ID Q V ++ A ++L RD
Sbjct: 102 EGIYDQVIDGMRRMYANRIVHADLSEYN-MLFHRKVYFIDLAQAVDMDHPMAAEFLERD 159
>gi|2500509|sp|Q57886|Y444_METJA HYPOTHETICAL PROTEIN MJ0444 >gi|2128326|pir||D64355 hypothetical
protein MJ0444 - Methanococcus jannaschii >gi|1499237
(U67495) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 290
Score = 38.3 bits (87), Expect = 0.044
Identities = 22/60 (36%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Query: 1 YEIIYNQMIDFMVNLYGRG-YVHGDXNEFNCMXKGNEIIVIDFPQCVKIEDIYADKYLLR 177
+E + + + M LY G VHGD +E+N + K +E + IDF Q V + A L+R
Sbjct: 190 WEKYFKIIKESMKKLYEEGELVHGDLSEYNILVKDDEPVFIDFSQSVITQHPLAHPLLIR 249
Query: 178 D 180
D
Sbjct: 250 D 250
>gi|2622106 (AE000873) conserved protein [Methanobacterium thermoautotrophicum]
Length = 273
Score = 36.4 bits (82), Expect = 0.17
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Query: 22 MIDFMVNLY-GRGYVHGDXNEFNCMXKGNEIIVIDFPQCVKIEDIYADKYLLRDFECI 192
+I++M LY G VHGD + FN + E ++ID Q + ++ A + L RD E I
Sbjct: 193 IIEYMHRLYKGARLVHGDLSFFNILNHCGEPVIIDVSQAMVLDHPLAGELLERDIENI 250
>gi|1172519|sp|P42493|PK1_ASFB7 SERINE/THREONINE-PROTEIN KINASE >gi|780489 (U18466) serine protein
kinase [African swine fever virus]
>gi|1097512|prf||2113434ED Ser protein kinase [African
swine fever virus]
Length = 298
Score = 34.4 bits (77), Expect = 0.65
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 19 QMIDFMVNLYGRGYVHGDXNEFNCMXKGNE--IIVIDFPQCVKIED 150
Q+I + N+Y +G++HGD + N + N+ I VIDF V++++
Sbjct: 135 QLILIIQNIYEKGFIHGDIKDENLIIDINQKIIKVIDFGSAVRLDE 180
>gi|1181445 (U42580) similar to PBCV-1 ORF A34R, corresponds to GenBank
Accession Number U17055 [Paramecium bursaria Chlorella
virus 1]
Length = 569
Score = 33.6 bits (75), Expect = 1.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1 YEIIYNQMIDFMVNLYGRGYVHGDXNEFNCM-XKGNEIIVIDFPQCVKIEDIY 156
Y Y Q+ + +L+ GYVH D + N M K ++ +IDF +K+ D+Y
Sbjct: 221 YAKFYVQLEKALCSLWLAGYVHLDLHRENIMVTKDGKVKIIDFGFALKLPDVY 273
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 33.6 bits (75), Expect = 1.1
Identities = 12/28 (42%), Positives = 20/28 (70%)
Query: 443 LFF*HIFNYDSNNYVHNKILFKSKYYKY 360
L+F Y++NN++HN I++K+ YY Y
Sbjct: 636 LYFIKNLFYNNNNFIHNHIIYKNNYYIY 663
>gi|462463|sp|P34206|PK1_ASFM2 SERINE/THREONINE-PROTEIN KINASE >gi|538628|pir||A45703 probable
serine/threonine-specific protein kinase (EC 2.7.1.-)
j9L - African swine fever virus >gi|210603 (M88275)
serine/threonine protein kinase [African swine fever
virus] >gi|397078|emb|CAA51459| (X72954) J9L 35.1 KDa
protein kinase [African swine fever virus]
>gi|450720|emb|CAA50828| (X71982) serine protein kinase
[African swine fever virus]
Length = 299
Score = 33.6 bits (75), Expect = 1.1
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 19 QMIDFMVNLYGRGYVHGDXNEFNCMXKGNE--IIVIDFPQCVKIEDIYADKYLLRDFECI 192
QMI + N+Y +G++HGD + N + ++ I VIDF V++ + + + +E +
Sbjct: 136 QMILIIQNIYEKGFIHGDIKDENLIIDIDQKIIKVIDFGSAVRLNETHPQYNMFGTWEYV 195
>gi|3256917|dbj|BAA29600| (AP000002) 313aa long hypothetical protein [Pyrococcus horikoshii]
Length = 313
Score = 32.5 bits (72), Expect = 2.5
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 EIIYNQMIDFMVNLYGRGYVHGDXNEFN-CMXKGNEIIVIDFPQCVKIEDIYADKYLLRD 180
E I +++D + G VHGD +EFN + N+I++ID+ Q + + + + L RD
Sbjct: 216 EEILGKILDEYEKIVKFGIVHGDMSEFNVVLTDDNDILIIDWAQYLTCANPESLELLKRD 275
>gi|3687501|emb|CAA21169| (AL031788) nucleosome assembly protein [Schizosaccharomyces pombe]
Length = 379
Score = 31.7 bits (70), Expect = 4.3
Identities = 13/21 (61%), Positives = 16/21 (75%)
Query: 425 FNYDSNNYVHNKILFKSKYYK 363
F +DSN+Y NKIL K+ YYK
Sbjct: 214 FEFDSNDYFTNKILTKTYYYK 234
>gi|1749750|dbj|BAA13932| (D89271) similar to Saccharomyces cerevisiae nucleosome assembly
protein, SWISS-PROT Accession Number p25293
[Schizosaccharomyces pombe]
Length = 353
Score = 31.7 bits (70), Expect = 4.3
Identities = 13/21 (61%), Positives = 16/21 (75%)
Query: 425 FNYDSNNYVHNKILFKSKYYK 363
F +DSN+Y NKIL K+ YYK
Sbjct: 188 FEFDSNDYFTNKILTKTYYYK 208
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80718343
Number of Sequences: 369800
Number of extensions: 1215222
Number of successful extensions: 2609
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2595
Number of HSP's gapped (non-prelim): 18
length of query: 196
length of database: 113,023,754
effective HSP length: 53
effective length of query: 142
effective length of database: 93424354
effective search space: 13266258268
effective search space used: 13266258268
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)