BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII-2F
(611 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3881079|emb|CAA21738| (AL032657) cDNA EST yk207f6.5 comes fro... 65 5e-10
gi|3402718 (AC004261) hypothetical protein [Arabidopsis thaliana] 62 4e-09
gi|4220527|emb|CAA23000| (AL035356) putative protein [Arabidopsi... 60 1e-08
gi|1363741|pir||S59392 probable membrane protein YLR246w - yeast... 60 2e-08
gi|3417417|emb|CAA20305| (AL031261) hypothetical protein [Schizo... 57 1e-07
gi|2827552|emb|CAA16560| (AL021635) predicted protein [Arabidops... 55 3e-07
gi|3080532|emb|CAA18660| (AL022600) hypothetical protein [Schizo... 54 9e-07
gi|466053|sp|P34679|YO41_CAEEL HYPOTHETICAL 68.7 KD PROTEIN ZK75... 54 9e-07
gi|1176580|sp|P42836|YN66_YEAST HYPOTHETICAL 39.2 KD PROTEIN IN ... 51 6e-06
gi|470362 (U00046) weak similarity to ZK757.1 [Caenorhabditis el... 50 1e-05
gi|747900|emb|CAA88679| (Z48758) unknown [Saccharomyces cerevisiae] 50 1e-05
gi|1077581|pir||S52691 probable membrane protein YDR126w - yeast... 50 1e-05
gi|2342647 (U90653) DHHC-domain-containing cysteine-rich protein... 50 2e-05
gi|2132817|pir||S61981 probable membrane protein YOL003c - yeast... 50 2e-05
gi|3845106 (AE001375) metal binding protein (DHHC domain) [Plasm... 50 2e-05
gi|3873666|emb|CAA93457| (Z69634) cDNA EST EMBL:C11678 comes fro... 49 2e-05
gi|3219912|sp|O14345|YB3F_SCHPO HYPOTHETICAL 38.1 KD PROTEIN C2F... 49 2e-05
gi|3877900|emb|CAB01873| (Z79600) Similarity with yeast hypothet... 48 5e-05
gi|3874398|emb|CAB03897| (Z81473) cDNA EST yk435d2.5 comes from ... 47 9e-05
gi|2773183 (AF039720) No definition line found [Caenorhabditis e... 47 9e-05
gi|3947545|emb|CAB03898| (Z81473) cDNA EST EMBL:D75353 comes fro... 47 9e-05
gi|3845261 (AE001414) metal binding protein (DHHC domain) [Plasm... 47 9e-05
gi|3859602 (AF104919) contains similarity to human DHHC-domain-c... 46 2e-04
gi|1175373|sp|Q09701|YA2A_SCHPO HYPOTHETICAL 72.5 KD PROTEIN C2F... 45 5e-04
gi|1255324 (U51999) C43H6.7 gene product [Caenorhabditis elegans] 44 0.001
gi|3875664|emb|CAB05476| (Z83104) predicted using Genefinder [Ca... 43 0.002
gi|2244865|emb|CAB10287| (Z97337) hypothetical protein [Arabidop... 43 0.002
gi|3873647|emb|CAA94868| (Z71177) Similarity with 39.2kd yeast p... 43 0.002
gi|4226075 (AF125443) contains similarity to ankyrin repeats (PF... 43 0.002
gi|3860313|emb|CAA10124| (AJ012683) hypothetical protein [Cicer ... 42 0.004
gi|2252856 (AF013294) No definition line found [Arabidopsis thal... 41 0.007
gi|1065487 (U40415) similar to C. elegans hypothetical protein C... 40 0.016
gi|2459444 (AC002332) hypothetical protein [Arabidopsis thaliana] 40 0.016
gi|665658|emb|CAA88207| (Z48179) unknown [Saccharomyces cerevisiae] 40 0.016
gi|746482 (U23513) D2021.2 [Caenorhabditis elegans] 40 0.016
gi|418745|pir||S34959 NADH dehydrogenase (ubiquinone) (EC 1.6.5.... 32 2.6
gi|3876638|emb|CAB04258| (Z81525) cDNA EST yk361e11.5 comes from... 31 7.7
gi|1085738|pir||S52053 cytochrome-c oxidase (EC 1.9.3.1) chain I... 31 7.7
>gi|3881079|emb|CAA21738| (AL032657) cDNA EST yk207f6.5 comes from this gene; cDNA EST
yk201f11.5 comes from this gene; cDNA EST yk207f6.3
comes from this gene [Caenorhabditis elegans]
Length = 368
Score = 64.8 bits (155), Expect = 5e-10
Identities = 31/97 (31%), Positives = 55/97 (55%), Gaps = 4/97 (4%)
Query: 589 LVNLTSLFLVSFTXPGKIIKEKKDKYINEISFYEDDVQVITEIPYKR----EILISGXKF 422
L+ +T+ F SFT PG I+ + I E+ + + I ++ + R +++++G
Sbjct: 103 LIVITNFFATSFTDPG-ILPRVDNIEIIEMDRQQANGNGINDVAHLRPRFQDVVVNGEHV 161
Query: 421 IENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
YC C +++P + SHC C++C+ DHHC + NCIG
Sbjct: 162 KMKYCTTCRLYRPPRCSHCAICDNCVLMFDHHCPWVGNCIG 202
>gi|3402718 (AC004261) hypothetical protein [Arabidopsis thaliana]
Length = 340
Score = 61.7 bits (147), Expect = 4e-09
Identities = 32/96 (33%), Positives = 55/96 (56%), Gaps = 6/96 (6%)
Query: 589 LVNLTSLFLVSFTXPGKIIKEKKDK------YINEISFYEDDVQVITEIPYKREILISGX 428
+++ T LFL S PG I + K+ I + S + ++ T+IP ++IL++G
Sbjct: 100 VLDFTFLFLTSSRDPGIIPRNKEAPEAEGLDMITQSSEWVNNKLGNTKIPRTKDILVNGY 159
Query: 427 KFIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCI 302
+C C +++P + SHC CN+C+ + DHHC + CI
Sbjct: 160 TVKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCI 201
>gi|4220527|emb|CAA23000| (AL035356) putative protein [Arabidopsis thaliana]
Length = 374
Score = 60.1 bits (143), Expect = 1e-08
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 598 FTLLVNLTSLFLVSFTXPGKIIKEKKDKYINEISFYEDDVQV------ITEIPYKREILI 437
FT+ V L LF S PG + + E YE V +IP +E+++
Sbjct: 72 FTIYV-LILLFFTSARDPGIVPRNSHPP--EEDLRYETTVSADGRQTPSVQIPRTKEVIV 128
Query: 436 SGXKFIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
+G YC C +++P + SHC CN+C+ + DHHC + CIG
Sbjct: 129 NGVSVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIG 174
>gi|1363741|pir||S59392 probable membrane protein YLR246w - yeast (Saccharomyces
cerevisiae) >gi|662337 (U20865) Ylr246wp [Saccharomyces
cerevisiae]
Length = 359
Score = 59.7 bits (142), Expect = 2e-08
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 412 YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGEXXXXXXXXXXXXXXXXXXXFV 233
YC C I++P + SHC CN C+ DHHC + NCIG+ +
Sbjct: 174 YCPSCRIWRPPRSSHCSTCNVCVMVHDHHCIWVNNCIGKRNYRFFLIFLLGAILSSVILL 233
Query: 232 KYLLINI--QETPDTDFYFYLSLLCFESMKLLSILFILAYNIYLKLIDTTSIEFVK 71
I+I + D + LLC+ + L + Y+I++ T+ EF+K
Sbjct: 234 TNCAIHIARESGGPRDCPVAILLLCYAGLTLWYPAILFTYHIFMAGNQQTTREFLK 289
>gi|3417417|emb|CAA20305| (AL031261) hypothetical protein [Schizosaccharomyces pombe]
Length = 350
Score = 57.0 bits (135), Expect = 1e-07
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 604 FPFTLLVNLTSLFLVSFTXPGKIIKEKKDKYINEISFYEDDVQVITEIPYKREILISGXK 425
F + + + S+F S PG + + N S + + IP R++L+ +
Sbjct: 121 FAYLYALAVVSMFKCSTADPGILPR-------NAYSLTYNPAHPWSVIPEDRKVLVGSTR 173
Query: 424 ----FIEN-YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
F+ YC C++++P + SHC+ C++C+ DHHC L CIG
Sbjct: 174 SDSVFVNTVYCHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIG 220
>gi|2827552|emb|CAA16560| (AL021635) predicted protein [Arabidopsis thaliana]
Length = 820
Score = 55.4 bits (131), Expect = 3e-07
Identities = 52/183 (28%), Positives = 74/183 (40%), Gaps = 3/183 (1%)
Query: 604 FPFTLLVNLTSLFLVSFTXPGKIIKEKKDKYINEISFYEDDVQVITEIPYKREILISGXK 425
F F L++ L S F V T PG + + + +I E + +I E
Sbjct: 584 FHFLLIMLLWSYFSVVVTDPGGVPTGWRPEL--DIEKSEGNQALIGEASVG-----DSSS 636
Query: 424 FIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGEXXXXXXXXXXXXXXXXX 245
YC CN ++P + HC C CI K DHHC + NC+G
Sbjct: 637 HGVRYCRKCNQYKPPRSHHCSVCGRCILKMDHHCVWVVNCVGANNYKSF----------- 685
Query: 244 XXFVKYLLINIQETPDTDFYFYLSLLCFESMKL---LSILFILAYNIYLKLIDTTSIEFV 74
L +N P SL CF + + LS+L L +I L +TT+IE V
Sbjct: 686 -----LLFLNTLTLPSDS---KTSPVLNIAFALSVLGFLIMHIMLVARNTTTIE-V 736
Query: 73 KRDTAL 56
K+ +L
Sbjct: 737 KQQLSL 742
>gi|3080532|emb|CAA18660| (AL022600) hypothetical protein [Schizosaccharomyces pombe]
Length = 356
Score = 53.9 bits (127), Expect = 9e-07
Identities = 32/99 (32%), Positives = 45/99 (45%)
Query: 595 TLLVNLTSLFLVSFTXPGKIIKEKKDKYINEISFYEDDVQVITEIPYKREILISGXKFIE 416
++L+ SL++ + + PGKI K NE S PY +I F
Sbjct: 117 SVLLPYISLYIAAKSNPGKIDL----KNWNEAS---------RRFPYDYKI------FFP 157
Query: 415 NYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
N C C +P + HC CN C+ K DHHC + NC+G
Sbjct: 158 NKCSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVG 196
>gi|466053|sp|P34679|YO41_CAEEL HYPOTHETICAL 68.7 KD PROTEIN ZK757.1 IN CHROMOSOME III
>gi|482217|pir||S41011 hypothetical protein ZK757.1 -
Caenorhabditis elegans >gi|3881771|emb|CAA82387|
(Z29121) ZK757.1 [Caenorhabditis elegans]
Length = 589
Score = 53.9 bits (127), Expect = 9e-07
Identities = 51/177 (28%), Positives = 81/177 (44%), Gaps = 25/177 (14%)
Query: 610 FIFPFTLLVNLTSLFLVSFTX----PGKIIKEKKDKYINEISFYEDDVQV---ITEIPYK 452
FIF L++ TS +T P K E K E S +D+ Q+ +++I +
Sbjct: 365 FIFYALLILFYTSYLRTVYTKAWKPPQKYCIEGASKATYE-SVKDDERQLQLFLSDIARE 423
Query: 451 REI--LISGXKFIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGEXXXXXX 278
R++ L+ G +C C +P + HC C C+ K DHHC + NC+
Sbjct: 424 RDLTLLVRGFDHGIRFCDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVN------- 476
Query: 277 XXXXXXXXXXXXXFVKYLLINI--------QETPDTDFYFYLS--------LLCFESMKL 146
KY ++ + Q + FYFY LL M
Sbjct: 477 -----------FGNYKYFILFLALSNIYISQAQNYFYFQNGRFPLVFLLFLSCMFS 525
Query: 145 LSILFILAYNIYLKLIDTTSIE 80
LS+ F+ Y++YL + T++E
Sbjct: 526 LSLSFLFFYHLYLTAKNRTTVE 547
>gi|1176580|sp|P42836|YN66_YEAST HYPOTHETICAL 39.2 KD PROTEIN IN EGT2-KRE1 INTERGENIC REGION
>gi|1362346|pir||S55863 probable membrane protein
YNL326c - yeast (Saccharomyces cerevisiae)
>gi|633660|emb|CAA86372| (Z46259) N0325 [Saccharomyces
cerevisiae] >gi|1302443|emb|CAA96258| (Z71602) ORF
YNL326c [Saccharomyces cerevisiae]
Length = 336
Score = 51.2 bits (120), Expect = 6e-06
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 595 TLLVNLTSLFLVSFTXPGKIIKEKKDKYINEISFYEDDVQVITEIPYKREILIS-GXKFI 419
TL V L + + V PG + + D ++++ E+ +++ E KR + + +F
Sbjct: 46 TLAVALYTYYKVIARGPGSPL-DFPDLLVHDLKAAENGLELPPEYMSKRCLTLKHDGRF- 103
Query: 418 ENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
C +C++++P + HC C+ CI K DHHC C G
Sbjct: 104 -RVCQVCHVWKPDRCHHCSSCDVCILKMDHHCPWFAECTG 142
>gi|470362 (U00046) weak similarity to ZK757.1 [Caenorhabditis elegans]
Length = 210
Score = 50.0 bits (117), Expect = 1e-05
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 610 FIFPFTLLVNLTSLFLVSFTXPGKIIKEKKDKYINEISFYEDDVQVITEIPYKREILISG 431
+ F F ++ + S F SFT P K +K ++ ++
Sbjct: 42 YYFHFLWIIIVCSYFSASFTPPTKCRDVEKVEHCDK------------------------ 77
Query: 430 XKFIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCI 302
+ E+ C +CN +P + HC CN C+ + DHHC +L+ CI
Sbjct: 78 -EIKEDVCQLCNYRKPPRWHHCRRCNLCVHRMDHHCPILQLCI 119
>gi|747900|emb|CAA88679| (Z48758) unknown [Saccharomyces cerevisiae]
Length = 264
Score = 50.0 bits (117), Expect = 1e-05
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 409 CVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGE 296
C C I +P + HC CN C+ DHHC + NCIG+
Sbjct: 136 CSTCRIVKPARSKHCSICNRCVLVADHHCIWINNCIGK 173
>gi|1077581|pir||S52691 probable membrane protein YDR126w - yeast (Saccharomyces
cerevisiae)
Length = 336
Score = 50.0 bits (117), Expect = 1e-05
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 409 CVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGE 296
C C I +P + HC CN C+ DHHC + NCIG+
Sbjct: 136 CSTCRIVKPARSKHCSICNRCVLVADHHCIWINNCIGK 173
>gi|2342647 (U90653) DHHC-domain-containing cysteine-rich protein [Homo
sapiens]
Length = 217
Score = 49.6 bits (116), Expect = 2e-05
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 412 YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGE 296
+C +CN+ + HC CN C+ DHHC L NC+GE
Sbjct: 135 HCNLCNVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGE 173
>gi|2132817|pir||S61981 probable membrane protein YOL003c - yeast (Saccharomyces
cerevisiae) >gi|1150993 (U43491) hypothetical protein
UNE378 [Saccharomyces cerevisiae]
>gi|1419765|emb|CAA99002| (Z74745) ORF YOL003c
[Saccharomyces cerevisiae]
Length = 378
Score = 49.6 bits (116), Expect = 2e-05
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 415 NYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
N+C C ++P + HC CN C+ DHHC NC+G
Sbjct: 78 NFCKKCQSYKPERSHHCKTCNQCVLMMDHHCPWTMNCVG 116
>gi|3845106 (AE001375) metal binding protein (DHHC domain) [Plasmodium
falciparum]
Length = 78
Score = 49.6 bits (116), Expect = 2e-05
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 397 NIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
N +P + HC C+SCI + DHHC+LL NCIG
Sbjct: 10 NPIRPARSKHCSYCSSCISRYDHHCFLLNNCIG 42
>gi|3873666|emb|CAA93457| (Z69634) cDNA EST EMBL:C11678 comes from this gene; cDNA EST
EMBL:C13926 comes from this gene; cDNA EST yk211g12.3
comes from this gene; cDNA EST yk211g12.5 comes from
this gene; cDNA EST yk362e5.3 comes from this gene; cDNA
ES... >gi|3878711|emb|CAA92831| (Z68507) cDNA EST
EMBL:C11678 comes from this gene; cDNA EST EMBL:C13926
comes from this gene; cDNA EST yk211g12.3 comes from
this gene; cDNA EST yk211g12.5 comes from this gene;
cDNA EST yk362e5.3 comes from this gene; cDNA ES...
Length = 447
Score = 49.2 bits (115), Expect = 2e-05
Identities = 17/38 (44%), Positives = 24/38 (62%)
Query: 412 YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
+CV CN F+ + HC +C+ C K DHHC + NC+G
Sbjct: 107 FCVPCNGFKVPRSHHCSKCDRCCMKMDHHCPWINNCVG 144
>gi|3219912|sp|O14345|YB3F_SCHPO HYPOTHETICAL 38.1 KD PROTEIN C2F12.15C IN CHROMOSOME II
>gi|2239244|emb|CAB10162| (Z97211) hypothetical protein
[Schizosaccharomyces pombe]
Length = 329
Score = 49.2 bits (115), Expect = 2e-05
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 412 YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
+C C ++ + HC +CN CI + DHHC KNC+G
Sbjct: 98 FCEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVG 135
>gi|3877900|emb|CAB01873| (Z79600) Similarity with yeast hypothetical protein C2F7.10 (Swiss
Prot accession number Q09701) [Caenorhabditis elegans]
Length = 239
Score = 48.0 bits (112), Expect = 5e-05
Identities = 15/40 (37%), Positives = 26/40 (64%)
Query: 418 ENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
+++C+ CN ++ SHC C+ CI++ DHHC + C+G
Sbjct: 39 DSFCIKCNNWKGPSTSHCKACDKCIYRMDHHCPHIGQCVG 78
>gi|3874398|emb|CAB03897| (Z81473) cDNA EST yk435d2.5 comes from this gene; cDNA EST
yk232f11.3 comes from this gene; cDNA EST yk232f11.5
comes from this gene; cDNA EST yk265e1.5 comes from this
gene; cDNA EST yk435d2.3 comes from this gene
[Caenorhabdi...
Length = 302
Score = 47.3 bits (110), Expect = 9e-05
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 409 CVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGE 296
C C+ +P + HC C C+ K DHHC + NC+GE
Sbjct: 115 CTRCDSLRPPRAHHCRVCKRCVRKMDHHCPWVNNCVGE 152
>gi|2773183 (AF039720) No definition line found [Caenorhabditis elegans]
Length = 885
Score = 47.3 bits (110), Expect = 9e-05
Identities = 22/58 (37%), Positives = 31/58 (52%)
Query: 469 TEIPYKREILISGXKFIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGE 296
T+ +R LI+G + I C C +P + HC C CI + DHHC + NC+GE
Sbjct: 67 TDETIERMQLINGQQTIYK-CQKCASIKPDRAHHCSVCERCIRRMDHHCPWVNNCVGE 123
>gi|3947545|emb|CAB03898| (Z81473) cDNA EST EMBL:D75353 comes from this gene; cDNA EST
EMBL:D72468 comes from this gene [Caenorhabditis
elegans]
Length = 240
Score = 47.3 bits (110), Expect = 9e-05
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 409 CVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGE 296
C C+ +P + HC C C+ K DHHC + NC+GE
Sbjct: 53 CTRCDSLRPPRAHHCRVCKRCVRKMDHHCPWVNNCVGE 90
>gi|3845261 (AE001414) metal binding protein (DHHC domain) [Plasmodium
falciparum]
Length = 101
Score = 47.3 bits (110), Expect = 9e-05
Identities = 15/37 (40%), Positives = 23/37 (61%)
Query: 409 CVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
C CN+ + + HC C+ CI K DHHC+ + +C+G
Sbjct: 38 CKKCNLLKIKRSHHCSVCDKCIMKMDHHCFWINSCVG 74
>gi|3859602 (AF104919) contains similarity to human DHHC-domain-containing
cysteine-rich protein (GB:U90653) and several S.
cerevisiae probable membrane proteins (GB:U20865,
Z48758, U43491) [Arabidopsis thaliana]
Length = 513
Score = 46.5 bits (108), Expect = 2e-04
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 415 NYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGE 296
+YC +C++ HC CN C+ DHHC L NC+G+
Sbjct: 149 SYCSLCDLEVKRSSKHCRTCNRCVEGFDHHCRWLNNCVGK 188
>gi|1175373|sp|Q09701|YA2A_SCHPO HYPOTHETICAL 72.5 KD PROTEIN C2F7.10 IN CHROMOSOME I
>gi|2130379|pir||S58154 hypothetical protein SPAC2F7.10
- fission yeast (Schizosaccharomyces pombe)
>gi|1052793|emb|CAA90497| (Z50142) unknown
[Schizosaccharomyces pombe]
Length = 642
Score = 44.9 bits (104), Expect = 5e-04
Identities = 32/104 (30%), Positives = 50/104 (47%), Gaps = 4/104 (3%)
Query: 610 FIFPFTLLVN-LTSLF--LVSFTXPGKIIKEKKDKYINEISFYEDDVQVITEIPYKREIL 440
+I P TL + L+SL L+SFT G ++ Y D + + + + L
Sbjct: 336 YIVPKTLPIKPLSSLLFVLISFTCIGLYVRTAFQN-----PGYVDKIGAVVQRREEISKL 390
Query: 439 ISGXKFIEN-YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
+ F ++ YC+ C +P + HC C CI + DHHC NC+G
Sbjct: 391 LDKDLFNQSHYCLKCFQVKPPRSYHCGACKRCINRYDHHCPWTGNCVG 438
>gi|1255324 (U51999) C43H6.7 gene product [Caenorhabditis elegans]
Length = 306
Score = 43.8 bits (101), Expect = 0.001
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 418 ENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
+++C CN ++ HC C C+ DHHC + C+G
Sbjct: 102 DSFCSKCNYWKSDNAHHCSVCEKCVLGMDHHCIWINQCVG 141
>gi|3875664|emb|CAB05476| (Z83104) predicted using Genefinder [Caenorhabditis elegans]
Length = 295
Score = 42.6 bits (98), Expect = 0.002
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 412 YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIGEXXXXXXXXXXXXXXXXXXXFV 233
+C C+ P + HC C+ CI ++DHHC C+G V
Sbjct: 104 HCHSCHSMSPLRAHHCPVCDVCILRRDHHCSFGAVCVGHFNQRYFVAAVINLFIMTLPLV 163
Query: 232 KY--LLINIQETPDTDF 188
Y L+NI+ T + F
Sbjct: 164 SYSWSLLNIKMTNEIGF 180
>gi|2244865|emb|CAB10287| (Z97337) hypothetical protein [Arabidopsis thaliana]
Length = 736
Score = 42.6 bits (98), Expect = 0.002
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 412 YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
+C +CN HC C+ C+ DHHC L NC+G
Sbjct: 175 FCTLCNAEVRKFSKHCRSCDKCVDCFDHHCRWLNNCVG 212
>gi|3873647|emb|CAA94868| (Z71177) Similarity with 39.2kd yeast protein (Swiss Prot accession
number P42836) [Caenorhabditis elegans]
Length = 600
Score = 42.6 bits (98), Expect = 0.002
Identities = 14/37 (37%), Positives = 18/37 (47%)
Query: 412 YCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCI 302
YC C +P + HC C C K DHHC + C+
Sbjct: 404 YCYECGHIKPDRARHCSSCGKCCIKYDHHCPWINMCV 440
>gi|4226075 (AF125443) contains similarity to ankyrin repeats (PFam: PF00023,
score=77.6, E=2.5e-19, n=4) [Caenorhabditis elegans]
Length = 783
Score = 42.6 bits (98), Expect = 0.002
Identities = 18/53 (33%), Positives = 26/53 (48%)
Query: 460 PYKREILISGXKFIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCI 302
P+K I K I+ YC C I + HC +C+ C+ DHHC + C+
Sbjct: 526 PFKDFIKDLEEKQIDRYCFTCWIPKTSSSHHCSQCDKCVDGFDHHCPWIHKCV 578
>gi|3860313|emb|CAA10124| (AJ012683) hypothetical protein [Cicer arietinum]
Length = 93
Score = 41.8 bits (96), Expect = 0.004
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 400 CNIFQPXKISHCYECNSCIFKKDHHCYLLKNCIG 299
C +P + HC C C+ K DHHC + NC+G
Sbjct: 2 CQNGKPPRCHHCSICQRCVLKMDHHCIWVVNCVG 35
>gi|2252856 (AF013294) No definition line found [Arabidopsis thaliana]
Length = 262
Score = 41.0 bits (94), Expect = 0.007
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 10/38 (26%)
Query: 412 YCVICNIFQPXKISHCYECNS----------CIFKKDHHCYLLKNCIG 299
YC C +P + HC C + C+ K DHHC + NC+G
Sbjct: 47 YCTKCRNVKPPRCHHCSVCKAKSDLFILCQRCVLKMDHHCVWIVNCVG 94
>gi|1065487 (U40415) similar to C. elegans hypothetical protein C27F7.10
(SP:P34679) [Caenorhabditis elegans]
Length = 232
Score = 39.9 bits (91), Expect = 0.016
Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Query: 502 ISFYEDDVQVITEIPYKREILISGXKFIENYCVI-------CNIFQPXKISHCYECNSCI 344
IS Y V VI E Y I + ++ C ++ + HC C C+
Sbjct: 31 ISTYYSCVHVIAENMYDNPTHIYWLTLVAKLIILEIAVNLACFVYY-ARSHHCPLCKMCV 89
Query: 343 FKKDHHCYLLKNCIG 299
+KDHHC++ C+G
Sbjct: 90 LRKDHHCFITGACVG 104
>gi|2459444 (AC002332) hypothetical protein [Arabidopsis thaliana]
Length = 567
Score = 39.9 bits (91), Expect = 0.016
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 412 YCVICN----IFQPXKI--SHCYECNSCIFKKDHHCYLLKNCIGE 296
+C +CN +F ++ HC C C+ DHHC L NC+G+
Sbjct: 131 FCSLCNAEHILFLKVRMFSKHCRSCGKCVDGFDHHCRWLNNCVGQ 175
>gi|665658|emb|CAA88207| (Z48179) unknown [Saccharomyces cerevisiae]
Length = 190
Score = 39.9 bits (91), Expect = 0.016
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 370 HCYECNSCIFKKDHHCYLLKNCIGE 296
HC CN C+ DHHC + NCIG+
Sbjct: 3 HCSICNRCVLVADHHCIWINNCIGK 27
>gi|746482 (U23513) D2021.2 [Caenorhabditis elegans]
Length = 272
Score = 39.9 bits (91), Expect = 0.016
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 436 SGXKFIENYCVICNIFQPXKISHCYECNSCIFKKDHHCYLLKNCI 302
+G + + YC C I + HC C C+ DHHC L +C+
Sbjct: 99 AGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCV 143
>gi|418745|pir||S34959 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Crithidia
oncopelti mitochondrion (SGC6) >gi|12881|emb|CAA39491|
(X56015) NADH dehydrogenase subunit 4 [Crithidia
oncopelti]
Length = 437
Score = 32.5 bits (72), Expect = 2.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 449 SFIWXFCYYLDVIFVKTYFVDVFIFLFFYNFTWXCK 556
SFI+ C+Y+ V+ V + ++I L +Y+F W K
Sbjct: 370 SFIYIICFYVIVLSVFVSSIYIYICLSYYSFVWMDK 405
>gi|3876638|emb|CAB04258| (Z81525) cDNA EST yk361e11.5 comes from this gene; cDNA EST
yk222c8.3 comes from this gene; cDNA EST yk222c8.5 comes
from this gene; cDNA EST yk253d12.3 comes from this
gene; cDNA EST yk253d12.5 comes from this gene; cDNA EST
y...
Length = 467
Score = 30.9 bits (68), Expect = 7.7
Identities = 18/59 (30%), Positives = 32/59 (53%), Gaps = 15/59 (25%)
Query: 481 VQVITEIPYKREIL--ISGXKFIE-------------NYCVICNIFQPXKISHCYECNSC 347
V++ T++P + L ++G KF E + C C + K +HC +C+ C
Sbjct: 382 VRLFTDLPVECIDLKNVAGYKFCEVCDRYVTERNVHCDRCQACTSVEQGKWNHCEKCDKC 441
Query: 346 IFKKDHHCYLLKNC 305
+ + HC C
Sbjct: 442 VKPRYVHCAQCARC 455
>gi|1085738|pir||S52053 cytochrome-c oxidase (EC 1.9.3.1) chain I - Trypanoplasma borreli
mitochondrion (SGC6) >gi|563140 (U11683) cytochrome c
oxidase subunit 1 [Trypanoplasma borreli]
Length = 546
Score = 30.9 bits (68), Expect = 7.7
Identities = 10/30 (33%), Positives = 21/30 (69%)
Query: 446 FSFIWXFCYYLDVIFVKTYFVDVFIFLFFY 535
F++ + F +Y ++ ++ YFV +FIF+F +
Sbjct: 322 FNWFYSFLFYDLLLLIEAYFVVIFIFMFLF 351
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86824152
Number of Sequences: 368476
Number of extensions: 1430331
Number of successful extensions: 3859
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3782
Number of HSP's gapped (non-prelim): 58
length of query: 203
length of database: 112640273
effective HSP length: 53
effective length of query: 150
effective length of database: 93111045
effective search space: 13966656750
effective search space used: 13966656750
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)