BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII-28R
         (783 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1352911|sp|P47147|YJ80_YEAST HYPOTHETICAL 80.2 KD PROTEIN IN ...    32  6.2


>gi|1352911|sp|P47147|YJ80_YEAST HYPOTHETICAL 80.2 KD PROTEIN IN CPA2-NNF1 INTERGENIC REGION
           >gi|1084628|pir||S57131 hypothetical protein YJR110w -
           yeast (Saccharomyces cerevisiae)
           >gi|1015824|emb|CAA89640| (Z49610) ORF YJR110w
           [Saccharomyces cerevisiae]
           Length = 688
           
 Score = 31.7 bits (70), Expect = 6.2
 Identities = 16/49 (32%), Positives = 28/49 (56%)

Query: 65  KTGIITLNKNFFIVSDLFNNNFSYNKSNTKFLRYFYSQLSYFFCIYKIL 211
           +T +I L++    +S  FN NF  NK + KF+   + Q  +  C+Y++L
Sbjct: 492 ETNLINLSR----ISKKFNENFKLNKKSLKFVSPVFQQ--FLDCVYQLL 534


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123229593
Number of Sequences: 369800
Number of extensions: 2166949
Number of successful extensions: 4264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4262
Number of HSP's gapped (non-prelim): 3
length of query: 261
length of database: 113023754
effective HSP length: 54
effective length of query: 206
effective length of database: 93054554
effective search space: 19169238124
effective search space used: 19169238124
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)