BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII-26R
         (867 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1171597|emb|CAA64581| (X95276) rps3 [Plasmodium falciparum]         34  1.8
gi|130593|sp|P05400|POL_CERV ENZYMATIC POLYPROTEIN [CONTAINS: AS...    33  3.1
gi|1352194|sp|P43079|CPH1_CANAL TRANSCRIPTION FACTOR CPH1              31  9.2
gi|558950 (U15152) Ste12-like transcription factor [Candida albi...    31  9.2
gi|626076|pir||A54767 transcription factor CPH1 - yeast (Candida...    31  9.2
gi|619642 (L16451) acid proteinase-related protein [Candida albi...    31  9.2


>gi|1171597|emb|CAA64581| (X95276) rps3 [Plasmodium falciparum]
           Length = 214
           
 Score = 33.6 bits (75), Expect = 1.8
 Identities = 36/123 (29%), Positives = 60/123 (48%)

Query: 143 NILY*YVIRYEMFFPFCNFLKMGFY*GN*VFVVCTYNDINTGKKYFXYFDRFIYNVKSFF 322
           NIL  Y I Y M+   CN+ +  +   N  F +  +  + T   Y  Y++  IYN+K  F
Sbjct: 35  NILLTYFIYYNMY-RICNYKEDNYINININFSINKF--VITFFLYNKYYN--IYNLKYIF 89

Query: 323 LLLNIYAQFHLIYEFK*SSLMFSIYNTANN*IKNIHF**KSFFIVEFKNRQLLQPDNIFX 502
           +LLN +  ++  Y      L     N  NN I  I +  K ++I ++K+ +L+  D ++ 
Sbjct: 90  ILLNYFNYYYYNYYNYMCFLKIKYVNNINN-INVIMYYIKKYYI-KYKSLKLIF-DYLYN 146

Query: 503 GIL 511
            IL
Sbjct: 147 NIL 149



>gi|130593|sp|P05400|POL_CERV ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
           REVERSE TRANSCRIPTASE ] >gi|76775|pir||S00854
           hypothetical protein 5 - carnation etched ring virus
           >gi|58863|emb|CAA28360| (X04658) pot. ORF 5 (AA 1-659)
           [Carnation etched ring virus] >gi|225356|prf||1301227E
           ORF 5 [Carnation etched ring virus]
           Length = 659
           
 Score = 32.8 bits (73), Expect = 3.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 322 KK*FYVIYKTIEIXKILFSCVNIIISADNKNLISLVKTHLQ------KIAKWEEHLISYD 161
           +K    + + I+   I  +    +I  DNKN    V  +L+      ++ +W+  L  YD
Sbjct: 574 EKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYD 633

Query: 160 ISV*YIKRTHNTSVTFL 110
             V +I  T N    FL
Sbjct: 634 FDVEHIAGTKNVFADFL 650



>gi|1352194|sp|P43079|CPH1_CANAL TRANSCRIPTION FACTOR CPH1
           Length = 656
           
 Score = 31.3 bits (69), Expect = 9.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 512 FFISSGIRQT*FNLLVKRYFYRCLKVFVIVSYWSSVYILIFTDFVNFETHSFQ 670
           FF+++       N +++RY+    + FV   YW+++Y +  TD V    + F+
Sbjct: 32  FFLATAPANWQENQVIRRYYLNHDEGFVSCVYWNNLYFITGTDIVRCIVYKFE 84



>gi|558950 (U15152) Ste12-like transcription factor [Candida albicans]
           Length = 656
           
 Score = 31.3 bits (69), Expect = 9.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 512 FFISSGIRQT*FNLLVKRYFYRCLKVFVIVSYWSSVYILIFTDFVNFETHSFQ 670
           FF+++       N +++RY+    + FV   YW+++Y +  TD V    + F+
Sbjct: 32  FFLATAPANWQENQVIRRYYLNHDEGFVSCVYWNNLYFITGTDIVRCIVYKFE 84



>gi|626076|pir||A54767 transcription factor CPH1 - yeast (Candida albicans)
           Length = 699
           
 Score = 31.3 bits (69), Expect = 9.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 512 FFISSGIRQT*FNLLVKRYFYRCLKVFVIVSYWSSVYILIFTDFVNFETHSFQ 670
           FF+++       N +++RY+    + FV   YW+++Y +  TD V    + F+
Sbjct: 32  FFLATAPANWQENQVIRRYYLNHDEGFVSCVYWNNLYFITGTDIVRCIVYKFE 84



>gi|619642 (L16451) acid proteinase-related protein [Candida albicans]
           Length = 699
           
 Score = 31.3 bits (69), Expect = 9.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 512 FFISSGIRQT*FNLLVKRYFYRCLKVFVIVSYWSSVYILIFTDFVNFETHSFQ 670
           FF+++       N +++RY+    + FV   YW+++Y +  TD V    + F+
Sbjct: 32  FFLATAPANWQENQVIRRYYLNHDEGFVSCVYWNNLYFITGTDIVRCIVYKFE 84


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153746552
Number of Sequences: 368476
Number of extensions: 2957235
Number of successful extensions: 7093
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7089
Number of HSP's gapped (non-prelim): 6
length of query: 289
length of database: 112640273
effective HSP length: 54
effective length of query: 234
effective length of database: 92742569
effective search space: 21701761146
effective search space used: 21701761146
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)