BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII-26F
         (466 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|207200 (M23883) T-cell receptor beta chain precursor [Rattus ...    31  5.3
gi|112368|pir||B30563 T-cell receptor beta chain precursor V reg...    31  5.3
gi|228110|prf||1717324AA T cell receptor variable region:SUBUNIT...    31  5.3
gi|2065303|emb|CAB07782| (Z93690) cytochrome b [Gnamptodon pumilo]     30  9.1


>gi|207200 (M23883) T-cell receptor beta chain precursor [Rattus norvegicus]
           Length = 155
           
 Score = 30.9 bits (68), Expect = 5.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 156 YWFAKNFTRNIIL-PKQLK*GGGTKKAKCLLA*TFLTIHSLIYWFYNAMKTSAKFLLH 326
           +W A +    +I  P+ L  G   K+ K  +  T +  HS +YW+Y  +    KFL++
Sbjct: 13  FWTASSMDSGVIQSPRHLVKG---KEQKARMQCTPIKEHSYVYWYYKKLGEDLKFLVY 67



>gi|112368|pir||B30563 T-cell receptor beta chain precursor V region (CRTB4) - rat
           (fragment)
           Length = 135
           
 Score = 30.9 bits (68), Expect = 5.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 156 YWFAKNFTRNIIL-PKQLK*GGGTKKAKCLLA*TFLTIHSLIYWFYNAMKTSAKFLLH 326
           +W A +    +I  P+ L  G   K+ K  +  T +  HS +YW+Y  +    KFL++
Sbjct: 13  FWTASSMDSGVIQSPRHLVKG---KEQKARMQCTPIKEHSYVYWYYKKLGEDLKFLVY 67



>gi|228110|prf||1717324AA T cell receptor variable region:SUBUNIT=beta:ISOTYPE=19 [Rattus
           norvegicus]
           Length = 114
           
 Score = 30.9 bits (68), Expect = 5.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 156 YWFAKNFTRNIIL-PKQLK*GGGTKKAKCLLA*TFLTIHSLIYWFYNAMKTSAKFLLH 326
           +W A +    +I  P+ L  G   K+ K  +  T +  HS +YW+Y  +    KFL++
Sbjct: 13  FWTASSMDSGVIQSPRHLVKG---KEQKARMQCTPIKEHSYVYWYYKKLGEDLKFLVY 67



>gi|2065303|emb|CAB07782| (Z93690) cytochrome b [Gnamptodon pumilo]
           Length = 124
           
 Score = 30.1 bits (66), Expect = 9.1
 Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 3/42 (7%)

Query: 255 FLTIHSLIYWFYNAMKTSAKFLLHETFA---WGLSQTFYKIIFEH 380
           F T H L+ +    M     F LHET +    GL+  FYKIIF +
Sbjct: 27  FYTFHFLLPFILLMMVMMHLFFLHETGSNNPLGLNSNFYKIIFHN 71


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92789367
Number of Sequences: 368476
Number of extensions: 1815698
Number of successful extensions: 3274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3274
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 112640273
effective HSP length: 52
effective length of query: 102
effective length of database: 93479521
effective search space: 9534911142
effective search space used: 9534911142
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)