BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII-19F
(759 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2239229|emb|CAB10146| (Z97210) hypothetical protein [Schizosa... 150 1e-35
gi|3881836|emb|CAB01454| (Z78019) Similarity to Yeast LPG22P pro... 145 4e-34
gi|2132182|pir||S61980 hypothetical protein YPL086c - yeast (Sac... 137 1e-31
gi|2496153|sp|Q58536|YB36_METJA HYPOTHETICAL PROTEIN MJ1136 >gi|... 71 7e-12
gi|2621908 (AE000859) conserved protein [Methanobacterium thermo... 67 2e-10
gi|2650692 (AE001110) conserved hypothetical protein [Archaeoglo... 61 1e-08
gi|3599396 (AF083072) hypothetical protein [Cenarchaeum symbiosum] 61 1e-08
gi|2854155 (AF045640) contains similarity to ion channel protein... 32 5.9
gi|4481958|emb|CAA21921| (AL033389) putative transcriptional reg... 31 7.8
>gi|2239229|emb|CAB10146| (Z97210) hypothetical protein [Schizosaccharomyces pombe]
Length = 544
Score = 150 bits (375), Expect = 1e-35
Identities = 72/114 (63%), Positives = 90/114 (78%), Gaps = 5/114 (4%)
Query: 416 AANEIVQ*IVSLHKKNKKWDFNSIKSSVCKXY--SVMPRLVDIISAIPPEY---SDLVHL 580
A EIV +++ +NK + N++K + K + S PRL DII+AIPP+ L+
Sbjct: 13 ACAEIVAELIASENQNKVINLNALKMRISKKHQLSESPRLTDIIAAIPPDAYLKESLMRK 72
Query: 581 LRAKPVRTSSGVAIVAVMCKPHRCPHIALTGNICIYCPGGVDSDFEYSTHSYTGYEPTS 757
LRAKPVRT+SG+A+VAVMCKPHRCPHIA+TGN+C+YCPGG DSDFEYST SYTGYEPTS
Sbjct: 73 LRAKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQSYTGYEPTS 131
>gi|3881836|emb|CAB01454| (Z78019) Similarity to Yeast LPG22P protein (TR:G1151240); cDNA EST
EMBL:T00686 comes from this gene; cDNA EST EMBL:C12415
comes from this gene; cDNA EST EMBL:C12728 comes from
this gene; cDNA EST EMBL:C10626 comes from this ge...
Length = 554
Score = 145 bits (361), Expect = 4e-34
Identities = 69/112 (61%), Positives = 86/112 (76%), Gaps = 3/112 (2%)
Query: 422 NEIVQ*IVSLHKKNKKWDFNSIKSSVCKX--YSVMPRLVDIISAIPPEYSD-LVHLLRAK 592
NEIV+ ++ H + K + N +K V + S P+LVDII+ +P +Y D L+ L+AK
Sbjct: 23 NEIVKLLIEAHNQKKDVNLNRLKCIVAQKNGLSFQPKLVDIIAGVPSDYKDSLLPKLKAK 82
Query: 593 PVRTSSGVAIVAVMCKPHRCPHIALTGNICIYCPGGVDSDFEYSTHSYTGYEPTS 757
PVRT+SG+A+VAVM KPHRCPHI TGNIC+YCPGG DSDFEYST SYTGYEPTS
Sbjct: 83 PVRTASGIAVVAVMSKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTS 137
>gi|2132182|pir||S61980 hypothetical protein YPL086c - yeast (Saccharomyces cerevisiae)
>gi|1151240 (U43281) Lpg22p [Saccharomyces cerevisiae]
Length = 557
Score = 137 bits (341), Expect = 1e-31
Identities = 64/95 (67%), Positives = 77/95 (80%), Gaps = 3/95 (3%)
Query: 473 DFNSIKSSVCKXYSV--MPRLVDIISAIPPEYSD-LVHLLRAKPVRTSSGVAIVAVMCKP 643
+ N + + K Y + PRL DII++IP +Y L+ L+AKPVRT+SG+A+VAVMCKP
Sbjct: 46 NLNGLITKYSKKYKLKQQPRLTDIINSIPDQYKKYLLPKLKAKPVRTASGIAVVAVMCKP 105
Query: 644 HRCPHIALTGNICIYCPGGVDSDFEYSTHSYTGYEPTS 757
HRCPHIA TGNIC+YCPGG DSDFEYST SYTGYEPTS
Sbjct: 106 HRCPHIAYTGNICVYCPGGPDSDFEYSTQSYTGYEPTS 143
>gi|2496153|sp|Q58536|YB36_METJA HYPOTHETICAL PROTEIN MJ1136 >gi|2128071|pir||G64441 hypothetical
protein Lpg22p homolog - Methanococcus jannaschii
>gi|1591770 (U67556) conserved hypothetical protein
[Methanococcus jannaschii]
Length = 541
Score = 71.4 bits (172), Expect = 7e-12
Identities = 46/110 (41%), Positives = 62/110 (55%), Gaps = 7/110 (6%)
Query: 428 IVQ*IVSLHKKNKKWD---FNSIKSSVCKXYSV---MPRLVDIIS-AIPPEYSDLVHLLR 586
I++ I+ + K K D IK+ + + + P +I+ A E L+ +LR
Sbjct: 15 IIERILDEYNKGKTLDKKRIEQIKAECLRIHRIGIGHPSNSEILQYATEEEKKILIPILR 74
Query: 587 AKPVRTSSGVAIVAVMCKPHRCPHIALTGNICIYCPGGVDSDFEYSTHSYTGYEPTS 757
KPVRT SGVA+VAVM P +CPH CI+CPGGV S F SYTG EP +
Sbjct: 75 KKPVRTISGVAVVAVMTSPEKCPH-----GKCIFCPGGVGSVFGDVPQSYTGREPAT 126
>gi|2621908 (AE000859) conserved protein [Methanobacterium thermoautotrophicum]
Length = 545
Score = 66.7 bits (160), Expect = 2e-10
Identities = 44/114 (38%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 416 AANEIVQ*IVSLHKKNKKWDFNSIKSSVCKXYSV---MPRLVDIISAIPPEYSDLVHLLR 586
A+ I+ I+S + +K D K VC+ + M + A P E + LLR
Sbjct: 14 ASRLIINGIISGEIRTRK-DLERFKHRVCREMGLERFMSNSEILEHATPEEKKVIEGLLR 72
Query: 587 AKPVRTSSGVAIVAVMCKPHRCPHIALTGNICIYCPGGVDSDFEYSTHSYTGYEPTS 757
KP RT SGVA+VAVMC+P CPH C+YCP + E + SYTG EP +
Sbjct: 73 KKPTRTISGVAVVAVMCQPRECPH-----GRCLYCP-----ESEKAPPSYTGEEPAA 119
>gi|2650692 (AE001110) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 517
Score = 60.9 bits (145), Expect = 1e-08
Identities = 32/66 (48%), Positives = 39/66 (58%)
Query: 560 YSDLVHLLRAKPVRTSSGVAIVAVMCKPHRCPHIALTGNICIYCPGGVDSDFEYSTHSYT 739
Y L +LR KPVRT SGVA+VAVM P CPH C+ CPGGV+ + + SY
Sbjct: 50 YGKLREILRVKPVRTISGVAVVAVMTSPAPCPH-----GKCLPCPGGVEKN---TPQSYV 101
Query: 740 GYEPTS 757
G EP +
Sbjct: 102 GLEPAA 107
>gi|3599396 (AF083072) hypothetical protein [Cenarchaeum symbiosum]
Length = 522
Score = 60.5 bits (144), Expect = 1e-08
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 500 CKXYSV--MPRLVDIIS-AIPPEYSDLVHLLRAKPVRTSSGVAIVAVMCKPHRCPHIALT 670
C YS+ +P+ +I++ A ++ L LL KPV+T+SGVA++AVM P+ CPH
Sbjct: 37 CTKYSLRRIPKNREILATARGQDFDRLRPLLLKKPVKTASGVAVIAVMPMPYACPH---- 92
Query: 671 GNICIYCPGGVDSDFEYSTHSYTGYEP 751
C YCPGG S+ + +SYTG EP
Sbjct: 93 -GRCTYCPGGEASN---TPNSYTGGEP 115
>gi|2854155 (AF045640) contains similarity to ion channel proteins
[Caenorhabditis elegans]
Length = 1581
Score = 31.7 bits (70), Expect = 5.9
Identities = 20/82 (24%), Positives = 41/82 (49%)
Query: 440 FIVLFRWLQVKLTWAKIK*VRFKNYNLQILNFYEIIKY*TFDDFKLSLVKHFYQNFIFRH 261
FI + + ++L ++ F+ + ++ ++II + DF + +++ N +
Sbjct: 637 FICCYSAISLQLFYSVPNLHHFRTFPQAFMSMFQIITQEGWTDFVVEVLRATDDNLVPLV 696
Query: 260 AYLLFIIYHFFVTLFLNIFYVA 195
A L F+ YH FVTL + +VA
Sbjct: 697 A-LYFVAYHLFVTLIVLSLFVA 717
>gi|4481958|emb|CAA21921| (AL033389) putative transcriptional regulator, zinc-finger,
binuclear cluster domain containing [Schizosaccharomyces
pombe]
Length = 595
Score = 31.3 bits (69), Expect = 7.8
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 243 HLSFFCYIVFKYFLCCLSAMKEFNDLENAISKKDIIEILSVYAEFLE 103
+L F Y F FL S + E +DL+ I KD+ + S++A FL+
Sbjct: 502 YLWLFLYCPFTPFLTVFSHLLEDDDLDADICVKDVDRLYSIHAFFLK 548
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120973247
Number of Sequences: 368476
Number of extensions: 2157807
Number of successful extensions: 5258
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5241
Number of HSP's gapped (non-prelim): 12
length of query: 253
length of database: 112640273
effective HSP length: 54
effective length of query: 198
effective length of database: 92742569
effective search space: 18363028662
effective search space used: 18363028662
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)