BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII-18R
(655 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2498886|sp|Q15437|S23B_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 ... 111 4e-41
gi|2498885|sp|Q15436|S23A_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 ... 99 6e-35
gi|2498884|sp|Q01405|S23A_MOUSE PROTEIN TRANSPORT PROTEIN SEC23 ... 99 1e-32
gi|3702631|emb|CAA21224| (AL031824) protein transport protein se... 61 8e-18
gi|134277|sp|P15303|SC23_YEAST PROTEIN TRANSPORT PROTEIN SEC23 >... 54 4e-15
gi|4176521|emb|CAA22877| (AL035263) protein transport protein se... 58 1e-13
gi|2137751|pir||I60247 SEC23 protein homolog, 64.7K - mouse >gi|... 65 2e-10
gi|3935152 (AC005106) T25N20.16 [Arabidopsis thaliana] 45 3e-09
gi|2244772|emb|CAB10195| (Z97335) transport protein [Arabidopsis... 41 5e-09
gi|4567227|gb|AAD23642|AC007119_8 (AC007119) putative transport ... 42 7e-09
gi|20733|emb|CAA33262| (X15188) precursor C-terminal fragment (A... 33 1.7
gi|71967|pir||LNHUPS pulmonary surfactant protein A precursor (g... 33 1.7
gi|190565 (M30838) pulmonary surfactant apoprotein precursor [Ho... 33 1.7
gi|120663|sp|P12859|G3PB_PEA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROG... 33 1.7
gi|1346746|sp|P03363|POL_HTLV2 POL POLYPROTEIN [CONTAINS: REVERS... 32 3.8
gi|74614|pir||GNLJH2 pol polyprotein - human T-cell lymphotropic... 32 3.8
gi|61486|emb|CAA24493| (V01164) env reading frame [Murine retrov... 32 4.9
gi|228809|prf||1811355A envelope protein [Mouse leukemogenic ret... 32 4.9
gi|200432 (M87550) envelope glycoprotein [Murine leukemia virus] 32 4.9
gi|199852 (M19005) envelope protein [Mus musculus] 32 4.9
gi|559061 (L37057) envelope glycoprotein [Mus musculus] 32 4.9
gi|119470|sp|P03386|ENV_MLVAV ENV POLYPROTEIN PRECURSOR (COAT PO... 32 4.9
gi|559063 (L37059) envelope glycoprotein [Murine leukemia virus] 32 4.9
gi|1549276 (U68703) hypothetical protein YdhE [Escherichia coli]... 31 8.5
gi|2507511|sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KD PROTEIN IN ... 31 8.5
>gi|2498886|sp|Q15437|S23B_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM B
>gi|1296666|emb|CAA65775| (X97065) Sec23 protein [Homo
sapiens]
Length = 767
Score = 111 bits (276), Expect = 4e-41
Identities = 61/121 (50%), Positives = 69/121 (56%)
Query: 406 T*YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWE 227
T +YE +ANRTA NGH IDIYACALDQTGLLEMKC +NLTG
Sbjct: 330 TKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCANLTG------------------- 370
Query: 226 GFVMLLFLHRYILGRIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTFQRVFSKDYNGDFRM 47
G++VMGDSFNTSLFKQTFQR+F+KD+NGDFRM
Sbjct: 371 ----------------------------GYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRM 402
Query: 46 A 44
A
Sbjct: 403 A 403
Score = 77.6 bits (188), Expect = 4e-41
Identities = 34/37 (91%), Positives = 36/37 (96%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
PPTQGPGMVVGDELKIPIRSWHDI+KDNAR +KKATK
Sbjct: 295 PPTQGPGMVVGDELKIPIRSWHDIEKDNARFMKKATK 331
>gi|2498885|sp|Q15436|S23A_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM A
>gi|1296664|emb|CAA65774| (X97064) Sec23 protein [Homo
sapiens]
Length = 765
Score = 98.7 bits (242), Expect = 6e-35
Identities = 56/120 (46%), Positives = 64/120 (52%)
Query: 406 T*YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWE 227
T ++EA+ANR A GH IDIYACALDQTGLLEMKC NLTG
Sbjct: 328 TKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTG------------------- 368
Query: 226 GFVMLLFLHRYILGRIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTFQRVFSKDYNGDFRM 47
G++VMGDSFNTSLFKQTFQRVF+KD +G F+M
Sbjct: 369 ----------------------------GYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKM 400
Score = 69.9 bits (168), Expect = 6e-35
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
P TQGPGMVVGDELK PIRSWHDI KDNA+++KK TK
Sbjct: 293 PATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTK 329
Score = 20.8 bits (42), Expect = 6e-35
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 47 GFGGVLEIK 21
GFGG LEIK
Sbjct: 401 GFGGTLEIK 409
>gi|2498884|sp|Q01405|S23A_MOUSE PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM A
Length = 623
Score = 98.7 bits (242), Expect = 1e-32
Identities = 56/120 (46%), Positives = 64/120 (52%)
Query: 406 T*YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWE 227
T ++EA+ANR A GH IDIYACALDQTGLLEMKC NLTG
Sbjct: 320 TKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTG------------------- 360
Query: 226 GFVMLLFLHRYILGRIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTFQRVFSKDYNGDFRM 47
G++VMGDSFNTSLFKQTFQRVF+KD +G F+M
Sbjct: 361 ----------------------------GYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKM 392
Score = 61.7 bits (147), Expect = 1e-32
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 618 GPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
GPGMVVGDELK P+RSWHDI+KDN +++KK TK
Sbjct: 289 GPGMVVGDELKTPMRSWHDIEKDNXKYVKKGTK 321
Score = 20.8 bits (42), Expect = 1e-32
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 47 GFGGVLEIK 21
GFGG LEIK
Sbjct: 393 GFGGTLEIK 401
>gi|3702631|emb|CAA21224| (AL031824) protein transport protein sec23 homolog
[Schizosaccharomyces pombe]
Length = 759
Score = 60.9 bits (145), Expect = 8e-18
Identities = 34/111 (30%), Positives = 50/111 (44%)
Query: 400 YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEGF 221
+YE + R + NGH++DI A LDQ G++EMK L++ TG
Sbjct: 326 FYEGLTKRVSANGHAVDILAGCLDQIGIMEMKSLASSTG--------------------- 364
Query: 220 VMLLFLHRYILGRIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTFQRVFSKD 68
G++V+ DSF TS+FKQ+FQR+F +D
Sbjct: 365 --------------------------GYLVLSDSFTTSIFKQSFQRIFGRD 389
Score = 50.4 bits (118), Expect = 8e-18
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
P T GPG VV EL+ PIRS HDI++D A+H+KKA +
Sbjct: 289 PSTVGPGTVVSTELREPIRSHHDIERDQAKHVKKALR 325
>gi|134277|sp|P15303|SC23_YEAST PROTEIN TRANSPORT PROTEIN SEC23 >gi|73083|pir||BVBY23 protein
transport protein SEC23 - yeast (Saccharomyces
cerevisiae) >gi|4443|emb|CAA33501| (X15474) SEC23 gene
product (AA 1 - 768) [Saccharomyces cerevisiae]
>gi|786326 (U25842) Protein transport protein Sec23p
(Swiss Prot. accession number P15303) [Saccharomyces
cerevisiae]
Length = 768
Score = 53.9 bits (127), Expect = 4e-15
Identities = 33/119 (27%), Positives = 53/119 (43%)
Query: 400 YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEGF 221
+Y +A R A NGH++DI+A DQ G+ EMK L++ TG
Sbjct: 328 FYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTG--------------------- 366
Query: 220 VMLLFLHRYILGRIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTFQRVFSKDYNGDFRMA 44
G +++ D+F+T++FKQ++ R+F+KD G +MA
Sbjct: 367 --------------------------GVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMA 399
Score = 48.0 bits (112), Expect = 4e-15
Identities = 21/37 (56%), Positives = 26/37 (69%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
P T PG++V ELK P+RS HDI D+A+H KKA K
Sbjct: 291 PGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACK 327
>gi|4176521|emb|CAA22877| (AL035263) protein transport protein sec23 homolog.
[Schizosaccharomyces pombe]
Length = 765
Score = 58.2 bits (138), Expect = 1e-13
Identities = 37/125 (29%), Positives = 56/125 (44%)
Query: 400 YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEGF 221
+Y ++A R + GH++D++A LDQ G++EM+ L N TG
Sbjct: 330 FYSSLAERLSNQGHALDLFAGCLDQVGIMEMENLVNNTG--------------------- 368
Query: 220 VMLLFLHRYILGRIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTFQRVFSKDYNGDFRMAS 41
G IV+ DSF TS+FKQ+FQR+FS D +G +M
Sbjct: 369 --------------------------GAIVLSDSFTTSIFKQSFQRLFSVDASGYLKMGF 402
Query: 40 EESLK 26
+L+
Sbjct: 403 MANLE 407
Score = 38.7 bits (88), Expect = 1e-13
Identities = 19/37 (51%), Positives = 23/37 (61%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
P T G G VV ELK P+RS +I D A+H KK+ K
Sbjct: 293 PCTVGLGQVVSTELKEPMRSHSEIANDKAKHFKKSKK 329
>gi|2137751|pir||I60247 SEC23 protein homolog, 64.7K - mouse >gi|220494|dbj|BAA02209|
(D12713) MSEC66 [Mus musculus]
Length = 573
Score = 65.2 bits (156), Expect = 2e-10
Identities = 40/96 (41%), Positives = 45/96 (46%)
Query: 334 LDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEGFVMLLFLHRYILGRIDLVNDXL* 155
LDQTGLLEMKC NLTG
Sbjct: 343 LDQTGLLEMKCCPNLTG------------------------------------------- 359
Query: 154 CIHRGHIVMGDSFNTSLFKQTFQRVFSKDYNGDFRM 47
G++VMGDSFNTSLFKQTFQRVF+KD +G F+M
Sbjct: 360 ----GYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKM 391
Score = 55.8 bits (132), Expect = 3e-07
Identities = 23/38 (60%), Positives = 29/38 (75%)
Query: 618 GPGMVVGDELKIPIRSWHDIQKDNARHLKKATKVSRSY 505
GPGMVVGDELK P+RSWHDI+KDN LK+ + + +
Sbjct: 289 GPGMVVGDELKTPMRSWHDIEKDNPNMLKRELSILKRW 326
Score = 20.8 bits (42), Expect = 2e-10
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 47 GFGGVLEIK 21
GFGG LEIK
Sbjct: 392 GFGGTLEIK 400
>gi|3935152 (AC005106) T25N20.16 [Arabidopsis thaliana]
Length = 811
Score = 44.9 bits (104), Expect = 3e-09
Identities = 32/125 (25%), Positives = 50/125 (39%), Gaps = 7/125 (5%)
Query: 400 YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEGF 221
+Y+A+AN+ GH +D++A ALDQ G+ EMK TG
Sbjct: 350 FYDALANQLVNQGHVLDLFASALDQVGVAEMKAAVERTG--------------------- 388
Query: 220 VMLLFLHRYILGRIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTFQRVFSKD-------YN 62
G +V+ +SF S+FK +F+RVF +N
Sbjct: 389 --------------------------GLVVLSESFGHSVFKDSFKRVFEDGEESLGLCFN 422
Query: 61 GDFRMASEESLK 26
G + + +K
Sbjct: 423 GTLEICCSKDIK 434
Score = 37.1 bits (84), Expect = 3e-09
Identities = 17/37 (45%), Positives = 23/37 (61%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
P ++GPG +V +L P+RS D+ KD A KKA K
Sbjct: 313 PCSEGPGTIVSKDLSEPLRSHKDLDKDAAPFYKKAEK 349
>gi|2244772|emb|CAB10195| (Z97335) transport protein [Arabidopsis thaliana]
Length = 769
Score = 41.0 bits (94), Expect = 5e-09
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 400 YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLTG--YVSIAAFGRAV 251
+Y+++A + GH +D++A ALDQ G+ EMK TG V +FG +V
Sbjct: 337 FYDSIAKQLVAQGHVLDLFASALDQVGVAEMKVAVESTGGLVVLSESFGHSV 388
Score = 40.2 bits (92), Expect = 5e-09
Identities = 17/37 (45%), Positives = 24/37 (63%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
P T+GPG ++ +L P+RS D+ KD A + KKA K
Sbjct: 300 PCTEGPGTIISKDLSDPVRSHKDLDKDAAPYYKKAVK 336
>gi|4567227|gb|AAD23642|AC007119_8 (AC007119) putative transport protein [Arabidopsis thaliana]
Length = 761
Score = 42.2 bits (97), Expect = 7e-09
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 630 PPTQGPGMVVGDELKIPIRSWHDIQKDNARHLKKATK 520
P TQGPG +V EL PIRS DI KD+A + KA +
Sbjct: 295 PSTQGPGAIVSRELSDPIRSHKDIDKDSAMYYHKAVE 331
Score = 38.7 bits (88), Expect = 7e-09
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 400 YYEAMANRTAVNGHSIDIYACALDQTGLLEMKCLSNLT-GYVSIA-AFGRAV 251
+YE +A + GH +D++A ++DQ G+ E+K T G+V +A +FG +V
Sbjct: 332 FYEMLAKQLVHQGHVLDVFASSVDQVGIAELKVAVEQTGGFVVLAESFGHSV 383
>gi|20733|emb|CAA33262| (X15188) precursor C-terminal fragment (AA -80 to 367) [Pisum
sativum]
Length = 447
Score = 33.2 bits (74), Expect = 1.7
Identities = 26/91 (28%), Positives = 42/91 (45%), Gaps = 2/91 (2%)
Query: 496 TAHTSPFAAVCVSKNISSGMFTDMKSLFCVT*YYEAMANRTAVNGHSIDIYACALDQ--T 323
T+H+ P + C SK + G F+ +KS C++ + A + D+ A L
Sbjct: 18 TSHSFP--SQCASKRLEVGEFSGLKSTSCISYVHSAR------DSSFYDVVAAQLTSKAN 69
Query: 322 GLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEG 224
G +K ++ V+I FGR R +L W G
Sbjct: 70 GSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHG 102
>gi|71967|pir||LNHUPS pulmonary surfactant protein A precursor (genomic clone) - human
>gi|224709|prf||1111285A apoprotein,pulmonary surfactant
[Homo sapiens]
Length = 248
Score = 33.2 bits (74), Expect = 1.7
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 471 AANGDVCAVMCCMIGSPWWPSSNGEHCLSGCHAR 572
AA+G VC V +GSP P + G H L G H R
Sbjct: 14 AASGAVCEVKDVCVGSPGIPGTPGSHGLPGRHGR 47
>gi|190565 (M30838) pulmonary surfactant apoprotein precursor [Homo sapiens]
Length = 248
Score = 33.2 bits (74), Expect = 1.7
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 471 AANGDVCAVMCCMIGSPWWPSSNGEHCLSGCHAR 572
AA+G VC V +GSP P + G H L G H R
Sbjct: 14 AASGAVCEVKDVCVGSPGIPGTPGSHGLPGRHGR 47
>gi|120663|sp|P12859|G3PB_PEA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE B PRECURSOR, CHLOROPLAST
>gi|66027|pir||DEPMNB glyceraldehyde-3-phosphate
dehydrogenase (NADP+) (phosphorylating) (EC 1.2.1.13) B
precursor, chloroplast - garden pea >gi|309671 (M55147)
glyceraldehyde-3-phosphate dehydrogenase B subunit
[Pisum sativum]
Length = 451
Score = 33.2 bits (74), Expect = 1.7
Identities = 26/91 (28%), Positives = 42/91 (45%), Gaps = 2/91 (2%)
Query: 496 TAHTSPFAAVCVSKNISSGMFTDMKSLFCVT*YYEAMANRTAVNGHSIDIYACALDQ--T 323
T+H+ P + C SK + G F+ +KS C++ + A + D+ A L
Sbjct: 22 TSHSFP--SQCASKRLEVGEFSGLKSTSCISYVHSAR------DSSFYDVVAAQLTSKAN 73
Query: 322 GLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEG 224
G +K ++ V+I FGR R +L W G
Sbjct: 74 GSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHG 106
>gi|1346746|sp|P03363|POL_HTLV2 POL POLYPROTEIN [CONTAINS: REVERSE TRANSCRIPTASE ; RIBONUCLEASE H ]
>gi|329563|gb|AAB59885.1| (M10060) pol polyprotein
[Human T-cell lymphotropic virus type 2]
Length = 982
Score = 32.1 bits (71), Expect = 3.8
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 402 YVTQNNDFMSVNIPLLMFFETHTAANGDVCAVMCCMIGSPWWPSSN 539
YV + + +I L ETH+A G++ A++C + + WPS N
Sbjct: 567 YVLWDQTILQQDITPLPSHETHSAQKGELLALICGLRAAKPWPSLN 612
>gi|74614|pir||GNLJH2 pol polyprotein - human T-cell lymphotropic virus type 2
Length = 982
Score = 32.1 bits (71), Expect = 3.8
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 402 YVTQNNDFMSVNIPLLMFFETHTAANGDVCAVMCCMIGSPWWPSSN 539
YV + + +I L ETH+A G++ A++C + + WPS N
Sbjct: 567 YVLWDQTILQQDITPLPSHETHSAQKGELLALICGLRAAKPWPSLN 612
>gi|61486|emb|CAA24493| (V01164) env reading frame [Murine retrovirus Akv]
Length = 687
Score = 31.7 bits (70), Expect = 4.9
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 435 NIPLLMFFETHTAANGDVCAVMCCMIGSP---WWPSSNGEHCLSGCHARSEWGFSVR 596
N P +F T NGD V P WWP + C+ H S WG R
Sbjct: 54 NSPHQVFNLTWEVTNGDRETVWAITGNHPLWTWWPDLTPDLCMLALHGPSYWGLEYR 110
>gi|228809|prf||1811355A envelope protein [Mouse leukemogenic retrovirus T3651/B]
Length = 687
Score = 31.7 bits (70), Expect = 4.9
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 435 NIPLLMFFETHTAANGDVCAVMCCMIGSP---WWPSSNGEHCLSGCHARSEWGFSVR 596
N P +F T NGD V P WWP + C+ H S WG R
Sbjct: 54 NSPHQVFNLTWEVTNGDRETVWAITGNHPLWTWWPDLTPDLCMLALHGPSYWGLEYR 110
>gi|200432 (M87550) envelope glycoprotein [Murine leukemia virus]
Length = 682
Score = 31.7 bits (70), Expect = 4.9
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 435 NIPLLMFFETHTAANGDVCAVMCCMIGSP---WWPSSNGEHCLSGCHARSEWGFSVR 596
N P +F T NGD V P WWP + C+ H S WG R
Sbjct: 54 NSPHQVFNLTWEVTNGDRETVWAITGNHPLWTWWPDLTPDLCMLALHGPSYWGLEYR 110
>gi|199852 (M19005) envelope protein [Mus musculus]
Length = 669
Score = 31.7 bits (70), Expect = 4.9
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 435 NIPLLMFFETHTAANGDVCAVMCCMIGSP---WWPSSNGEHCLSGCHARSEWGFSVR 596
N P +F T NGD V P WWP + C+ H S WG R
Sbjct: 36 NSPHQVFNLTWEVTNGDRETVWAITGNHPLWTWWPDLTPDLCMLALHGPSYWGLEYR 92
>gi|559061 (L37057) envelope glycoprotein [Mus musculus]
Length = 669
Score = 31.7 bits (70), Expect = 4.9
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 435 NIPLLMFFETHTAANGDVCAVMCCMIGSP---WWPSSNGEHCLSGCHARSEWGFSVR 596
N P +F T NGD V P WWP + C+ H S WG R
Sbjct: 36 NSPHQVFNLTWEVTNGDRETVWAITGNHPLWTWWPDLTPDLCMLALHGPSYWGLEYR 92
>gi|119470|sp|P03386|ENV_MLVAV ENV POLYPROTEIN PRECURSOR (COAT POLYPROTEIN) (CONTAINS: KNOB
PROTEIN GP70; SPIKE PROTEIN P15E; R PROTEIN)
>gi|74693|pir||VCVWEK env polyprotein - AKV murine
leukemia virus >gi|331996 (J01998) env polyprotein [AKV
murine leukemia virus]
Length = 669
Score = 31.7 bits (70), Expect = 4.9
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 435 NIPLLMFFETHTAANGDVCAVMCCMIGSP---WWPSSNGEHCLSGCHARSEWGFSVR 596
N P +F T NGD V P WWP + C+ H S WG R
Sbjct: 36 NSPHQVFNLTWEVTNGDRETVWAITGNHPLWTWWPDLTPDLCMLALHGPSYWGLEYR 92
>gi|559063 (L37059) envelope glycoprotein [Murine leukemia virus]
Length = 669
Score = 31.7 bits (70), Expect = 4.9
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 435 NIPLLMFFETHTAANGDVCAVMCCMIGSP---WWPSSNGEHCLSGCHARSEWGFSVR 596
N P +F T NGD V P WWP + C+ H S WG R
Sbjct: 36 NSPHQVFNLTWEVTNGDRETVWAIAGNHPLWTWWPDLTPDLCMLALHGPSYWGLEYR 92
>gi|1549276 (U68703) hypothetical protein YdhE [Escherichia coli] >gi|1787953
(AE000261) putative transport protein [Escherichia coli]
Length = 457
Score = 30.9 bits (68), Expect = 8.5
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 364 GHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEGFVMLLFLHRYILG 185
G ++D A +TGL+ C++ LT +++ + LY N E V+ L H +L
Sbjct: 306 GSTLDAQTAA--RTGLMVGVCMATLTAIFTVSLREQIALLYNDNPE--VVTLAAHLMLLA 361
Query: 184 RIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTF 89
+ ++D + I G I+ G S+F TF
Sbjct: 362 AVYQISDSIQVIGSG-ILRGYKDTRSIFYITF 392
>gi|2507511|sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KD PROTEIN IN RIBC-PYKF INTERGENIC REGION
>gi|1742737|dbj|BAA15430| (D90809) ORF_ID:o319#7;
similar to [SwissProt Accession Number P37340]
[Escherichia coli] >gi|1742747|dbj|BAA15439| (D90810)
ORF_ID:o319#7; similar to [SwissProt Accession Number
P37340] [Escherichia coli]
Length = 457
Score = 30.9 bits (68), Expect = 8.5
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 364 GHSIDIYACALDQTGLLEMKCLSNLTGYVSIAAFGRAVRLYLSNWEGFVMLLFLHRYILG 185
G ++D A +TGL+ C++ LT +++ + LY N E V+ L H +L
Sbjct: 306 GSTLDAQTAA--RTGLMVGVCMATLTAIFTVSLREQIALLYNDNPE--VVTLAAHLMLLA 361
Query: 184 RIDLVNDXL*CIHRGHIVMGDSFNTSLFKQTF 89
+ ++D + I G I+ G S+F TF
Sbjct: 362 AVYQISDSIQVIGSG-ILRGYKDTRSIFYITF 392
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142149259
Number of Sequences: 368476
Number of extensions: 3044559
Number of successful extensions: 9407
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9368
Number of HSP's gapped (non-prelim): 48
length of query: 218
length of database: 112640273
effective HSP length: 53
effective length of query: 164
effective length of database: 93111045
effective search space: 15270211380
effective search space used: 15270211380
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)