BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII-16F
(903 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|97162|pir||S16288 hypothetical protein - Haemophilus influenzae 61 1e-08
gi|4102010 (AF007429) putative transposase [Haemophilus paragall... 57 1e-07
gi|1333760|emb|CAA41166| (X58176) ORF2 [Haemophilus influenzae] 53 3e-06
gi|3212219 (U32812) H. influenzae predicted coding region HI1328... 45 8e-04
gi|97161|pir||S24059 gene IS1016-V6 protein (insertion sequence ... 45 8e-04
gi|2829877 (AC002396) Hypothetical protein [Arabidopsis thaliana] 34 1.5
gi|4337200|gb|AAD18114| (AC006403) putative NAM protein [Arabido... 33 2.5
gi|1915984 (U65919) Tritrichomonas foetus serine/threonine prote... 32 5.6
gi|3323272 (AE001263) lipase, putative [Treponema pallidum] 31 9.7
>gi|97162|pir||S16288 hypothetical protein - Haemophilus influenzae
Length = 217
Score = 60.9 bits (145), Expect = 1e-08
Identities = 51/193 (26%), Positives = 89/193 (45%), Gaps = 2/193 (1%)
Query: 282 EILYQFSCRRTVADSAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDET 461
++L F T +A+ LG + + Y+ R +++Y L ++++ D I +E+
Sbjct: 15 KLLEFFVLEVTARAAADLLGIQANSAIFLYRKIREAISYHLALEADEVVDDQI--ELNES 72
Query: 462 PMTTRHGNTGATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHT 641
H ++ V V G + K F + + L + I P S ++T
Sbjct: 73 YFGGHHKGKRGRGAAGKVAVFGLLK-RQGKIFTVVVENTKTGTLMPVIVRKIKPDSWVYT 131
Query: 642 DSHRSYLTLSSLGYTHFTVNHSRELVSRTGIHTNWIEGIFGVLKKLRRKYDSNWSGVD-- 815
D++RSY L + + H +NHS EL + H N IE + K++ RKY +G+D
Sbjct: 132 DTYRSYDALDASKFHHERINHS-ELFAVKQNHINGIENFWSQAKRILRKY----NGIDRK 186
Query: 816 NLNIFLSEFCFRYTY 860
N +FL E FR+ +
Sbjct: 187 NFPLFLKECEFRFNF 201
>gi|4102010 (AF007429) putative transposase [Haemophilus paragallinarum]
Length = 216
Score = 57.4 bits (136), Expect = 1e-07
Identities = 48/196 (24%), Positives = 85/196 (42%)
Query: 312 TVADSAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDETPMTTRHGNTG 491
T +AE + +KTT ++ R L Y E G+ I DE+
Sbjct: 23 TARTAAELVNVNKTTAAYYFHRLR-QLIYQNSLHLEMFEGE---IEADESYFGGARKGKR 78
Query: 492 ATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLS 671
++ + V G + + K + +P+ L + E + P S+++TD++RSY L
Sbjct: 79 GRGAAGKIAVFGLLK-RNGKVYTVAVPNTQSATLLPIIREQVKPDSIVYTDNYRSYDVLD 137
Query: 672 SLGYTHFTVNHSRELVSRTGIHTNWIEGIFGVLKKLRRKYDSNWSGVDNLNIFLSEFCFR 851
++HF +NHS H N IE + K+ RK+ N + ++L E +R
Sbjct: 138 VSEFSHFRINHSTHFAENHN-HINGIENFWSQAKRHLRKF--NGIPKAHFELYLKECEWR 194
Query: 852 YTYNGWDRRKAVLKLL 899
+ Y+ + ++LK L
Sbjct: 195 FNYSNIKSQISILKQL 210
>gi|1333760|emb|CAA41166| (X58176) ORF2 [Haemophilus influenzae]
Length = 164
Score = 52.7 bits (124), Expect = 3e-06
Identities = 46/171 (26%), Positives = 77/171 (44%)
Query: 324 SAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDETPMTTRHGNTGATRS 503
+A+ LG + + FY+ R ++Y L ++++ DG I DE+ + +
Sbjct: 2 AADLLGIQANSAILFYRKIREVISYHLALEADEVV-DGQI-ELDESYFGSHRKGKRGRGT 59
Query: 504 SNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLSSLGY 683
+ V V G + K F + + E L + I P S ++TD++RSY L +
Sbjct: 60 AGKVAVFGLLK-RQGKVFTVVVENTRTETLMPVIVRKIKPDSRVYTDTYRSYDALDVSKF 118
Query: 684 THFTVNHSRELVSRTGIHTNWIEGIFGVLKKLRRKYDSNWSGVDNLNIFLS 836
H +NHS EL + H N IE + K++ RKY +G+D S
Sbjct: 119 HHERINHS-ELFAVKQNHINGIENFWSQAKRILRKY----NGIDQKTFLYS 164
>gi|3212219 (U32812) H. influenzae predicted coding region HI1328.1
[Haemophilus influenzae Rd]
Length = 123
Score = 44.9 bits (104), Expect = 8e-04
Identities = 29/117 (24%), Positives = 59/117 (49%), Gaps = 2/117 (1%)
Query: 549 KCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLSSLGYTHFTVNHSRELVSRT 728
K + +P+ L + E + P S+++TD+ RSY L ++HF +NHS
Sbjct: 4 KVYTVVVPNVQSATLLPIIREKVKPDSIVYTDTFRSYDVLDVSEFSHFRINHSTHFAE-- 61
Query: 729 GIHTNWIEGIFGVLKKLRRKYDSNWSGV--DNLNIFLSEFCFRYTYNGWDRRKAVLKLL 899
+ N+I GI G +++ ++G+ ++ ++L E +R+ + + ++LK L
Sbjct: 62 --NHNYINGI-GNFWNHAKRHLQKFNGIPKEHFELYLKECEWRFNNSEIKSQISILKQL 117
>gi|97161|pir||S24059 gene IS1016-V6 protein (insertion sequence IS1016) - Haemophilus
influenzae >gi|43593|emb|CAA42428| (X59756) IS1016-V6
[Haemophilus influenzae]
Length = 191
Score = 44.9 bits (104), Expect = 8e-04
Identities = 43/165 (26%), Positives = 72/165 (43%)
Query: 282 EILYQFSCRRTVADSAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDET 461
++L F T +A+ LG + + FY+ R ++Y L ++++ DG I DE+
Sbjct: 15 KLLEFFVLEVTARAAADLLGIQANSAILFYRKIREVISYHLALEADEVF-DGQI-ELDES 72
Query: 462 PMTTRHGNTGATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHT 641
++ V V G + K F + + E L + I P S ++T
Sbjct: 73 YFGGHRKGKRGLGAAGKVAVFGLLK-RQGKVFTVVVENTKTETLMPVIVRKIKPHSWVYT 131
Query: 642 DSHRSYLTLSSLGYTHFTVNHSRELVSRTGIHTNWIEGIFGVLKK 776
+++RSY L + H +NHS EL + H N IE + KK
Sbjct: 132 NTYRSYDALDVSKFHHERINHS-ELFAVKQNHINGIENFWSQAKK 175
>gi|2829877 (AC002396) Hypothetical protein [Arabidopsis thaliana]
Length = 252
Score = 34.0 bits (76), Expect = 1.5
Identities = 22/74 (29%), Positives = 35/74 (46%), Gaps = 4/74 (5%)
Query: 216 TNYNILKDTIFNGTKLQYGEVLEILYQFSCRRT----VADSAETLGHSKTTIMSFYKLFR 383
T+Y I F+ +YGE+L++L F RR V E L ++ + +F
Sbjct: 122 TSYLIAVKEAFHDEPAKYGEMLKLLKDFKARRVDAACVIARVEELMKDHLNLLFGFCVFL 181
Query: 384 ASLTYFLEKTSEKLGGDG 437
++ T F K + GDG
Sbjct: 182 SATTSFTTKLKARFQGDG 199
>gi|4337200|gb|AAD18114| (AC006403) putative NAM protein [Arabidopsis thaliana]
Length = 316
Score = 33.2 bits (74), Expect = 2.5
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 492 ATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLS 671
A R T WV+ +HS+ + + S++D EW++ T++ + Y++ S
Sbjct: 128 APRGEKTCWVMHEYRLHSKSSYRT-----SKQD------EWVVCRVFKKTEATKKYISTS 176
Query: 672 SLGYTHFTVNHSRELVSRT 728
S +H NH+R + T
Sbjct: 177 SSSTSHHHNNHTRASILST 195
>gi|1915984 (U65919) Tritrichomonas foetus serine/threonine protein kinase
[Tritrichomonas foetus]
Length = 468
Score = 32.1 bits (71), Expect = 5.6
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 7/75 (9%)
Query: 500 IFKHC-LGCWCG------RYPQ*EMFLIIFTIEIKRRSI*IFRRVDFTRICNTHRFPQIV 658
I KH GC+C R + E F+ I R + IF +VD ICN +R
Sbjct: 43 IAKHTPTGCFCAAKIVDLRNTKTEEFVGIM------REVSIFMQVDHPNICNLYRLSTAN 96
Query: 659 FNIIFFGIYAFHG*PFERVSIK 724
+IFF YA G E V+ K
Sbjct: 97 NQLIFFMEYASRGTLLEYVNAK 118
>gi|3323272 (AE001263) lipase, putative [Treponema pallidum]
Length = 345
Score = 31.3 bits (69), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (53%)
Query: 121 LYLCGNIPXDWKGLTISLFVMFFKSSNSLRF 29
L+LCG + W GL S+F FF + L F
Sbjct: 4 LFLCGCVMKKWCGLAFSIFFSFFLRAQDLTF 34
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182228317
Number of Sequences: 368476
Number of extensions: 3888658
Number of successful extensions: 8609
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8601
Number of HSP's gapped (non-prelim): 10
length of query: 301
length of database: 112640273
effective HSP length: 54
effective length of query: 246
effective length of database: 92742569
effective search space: 22814671974
effective search space used: 22814671974
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)