BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII-15F
         (772 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3758851|emb|CAB11136| (Z98551) predicted using hexExon; MAL3P...    32  4.6
gi|1351853|sp|P49580|ACHE_XENLA NICOTINIC ACETYLCHOLINE RECEPTOR...    31  8.0


>gi|3758851|emb|CAB11136| (Z98551) predicted using hexExon; MAL3P6.15 (PFC0780w), Hypothetical
            protein, len: 2658 aa [Plasmodium falciparum]
            Length = 2657
            
 Score = 32.1 bits (71), Expect = 4.6
 Identities = 14/30 (46%), Positives = 19/30 (62%)

Query: 557  LYNEKIYKNYFYNSYWFKYIGWNNFYFIFF 646
            ++N+  Y N F+N   FK    NNFYFIF+
Sbjct: 2397 IFNDFNYLNPFHNFLSFKKKNQNNFYFIFY 2426



>gi|1351853|sp|P49580|ACHE_XENLA NICOTINIC ACETYLCHOLINE RECEPTOR EPSILON SUBUNIT PRECURSOR
           >gi|640049 (U19612) nicotinic acetylcholine receptor
           epsilon subunit precursor [Xenopus laevis]
           Length = 504
           
 Score = 31.3 bits (69), Expect = 8.0
 Identities = 16/48 (33%), Positives = 25/48 (51%)

Query: 20  PDIFKFDHHYIKIYINILTQRRYIFXIINFKVMVFIF*QSALLIYYYP 163
           P   K D  Y +I  N++ QR+ +F IIN  V   +     +L+Y+ P
Sbjct: 219 PKYSKEDLRYQEIVFNLIIQRKPLFYIINIIVPCVLISFLVVLVYFLP 266


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114403256
Number of Sequences: 369800
Number of extensions: 1915083
Number of successful extensions: 7976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7971
Number of HSP's gapped (non-prelim): 5
length of query: 257
length of database: 113023754
effective HSP length: 54
effective length of query: 202
effective length of database: 93054554
effective search space: 18797019908
effective search space used: 18797019908
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)