BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 12VII-13F
(641 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL... 41 0.006
gi|172000 (M84169) homologue of bacterial MutS protein [Saccharo... 38 0.049
gi|730065|sp|P25846|MSH1_YEAST MUTS PROTEIN HOMOLOG 1 >gi|630277... 38 0.049
gi|2191186 (AF007271) contains similarity to tropomyosin and kin... 38 0.084
gi|3329624 (AF078790) No definition line found [Caenorhabditis e... 38 0.084
gi|1934970|emb|CAA70130| (Y08926) AARP1 protein [Plasmodium falc... 38 0.084
gi|2832348|emb|CAA74990| (Y14674) glutamate--cysteine ligase [Pl... 37 0.14
gi|3250878|emb|CAA07354| (AJ006966) gamma-glutamylcysteine synth... 37 0.14
gi|123661|sp|P02828|HS83_DROME HEAT SHOCK PROTEIN 83 (HSP 82) >g... 36 0.25
gi|3649757|emb|CAB11106| (Z98547) predicted using hexExon; MAL3P... 36 0.25
gi|2062377 (U75687) heat shock protein 83 [Drosophila auraria] 36 0.25
gi|3845107 (AE001375) hypothetical protein [Plasmodium falciparum] 36 0.32
gi|3845266 (AE001415) hypothetical protein [Plasmodium falciparum] 36 0.32
gi|4160296|emb|CAA07715| (AJ007863) gamma-glutamylcysteine synth... 35 0.56
gi|72393|pir||SAZQK1 major merozoite surface antigen precursor -... 35 0.56
gi|224859|prf||1202270A antigen,major surface [Plasmodium falcip... 35 0.56
gi|1346587|sp|P04933|MSP1_PLAFW MEROZOITE SURFACE PROTEIN 1 PREC... 35 0.56
gi|4455909|emb|CAB36903| (AJ131294) major surface protein-1 [Clo... 35 0.56
gi|84241|pir||A24594 probable major surface antigen (83K, 19K, 4... 35 0.56
gi|1352937|sp|P47172|YJ9I_YEAST HYPOTHETICAL 39.9 KD PROTEIN IN ... 35 0.56
gi|1346586|sp|P04932|MSP1_PLAFK MEROZOITE SURFACE PROTEIN 1 PREC... 35 0.56
gi|4008441|emb|CAA22448| (AL034488) predicted using Genefinder; ... 34 0.73
gi|1710782|sp|P52498|RSR1_CANAL RAS-RELATED PROTEIN RSR1 >gi|120... 34 0.96
gi|1170659|sp|P33174|KIF4_MOUSE KINESIN-LIKE PROTEIN KIF4 >gi|10... 34 1.3
gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococc... 33 1.6
gi|1118176 (U41992) coded for by C. elegans cDNA yk113g4.3; code... 33 1.6
gi|2947228 (AF031886) erythrocyte binding protein [Plasmodium yo... 33 2.2
gi|603664 (U14101) putative reverse transcriptase; ORF2; encodes... 33 2.2
gi|5094|emb|CAA26191| (X02331) SPRAS-protein [Schizosaccharomyce... 32 2.8
gi|68942|pir||TVBYSR transforming protein ras - fission yeast (S... 32 2.8
gi|3845128 (AE001381) hypothetical protein [Plasmodium falciparum] 32 2.8
gi|461698|sp|P33322|CBF5_YEAST CENTROMERE/MICROTUBULE BINDING PR... 32 2.8
gi|1722855|sp|P50532|XCPC_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP... 32 2.8
gi|1208849 (U50066) T14A8.1 gene product [Caenorhabditis elegans] 32 2.8
gi|3123259|sp|P08647|RAS_SCHPO RAS-LIKE PROTEIN 1 >gi|2330716|em... 32 3.7
gi|172361 (K01970) RAS1 protein [Saccharomyces cerevisiae] 32 3.7
gi|3845309 (AE001424) RESA-H3 antigen [Plasmodium falciparum] 32 3.7
gi|3878857|emb|CAB05583| (Z83120) predicted using Genefinder; cD... 32 3.7
gi|2764713|emb|CAA05353| (AJ002379) sigma 70 [Campylobacter jejuni] 32 3.7
gi|68941|pir||TVBYPR transforming protein ras - fission yeast (S... 32 3.7
gi|2132082|pir||S67087 hypothetical protein YOR195w - yeast (Sac... 32 3.7
gi|530446|emb|CAA83773| (Z33128) DNA repair protein RecM [Mycopl... 32 3.7
gi|3549665|emb|CAA20576| (AL031394) hypothetical protein [Arabid... 32 3.7
gi|2688777 (AE001181) exonuclease SbcC (sbcC) [Borrelia burgdorf... 32 4.8
gi|3764023|emb|CAA15616| (AL008970) predicted using hexExon; MAL... 32 4.8
gi|4100186|gb|AAD00774| (U95159) gelsolin-related protein GRP125... 32 4.8
gi|4499900|emb|CAB39319| (AJ133736) BM-40 [Drosophila melanogaster] 32 4.8
gi|2633508|emb|CAB13011| (Z99110) similar to oligoendopeptidase ... 32 4.8
gi|2425133 (AF020282) DG2033 gene product [Dictyostelium discoid... 32 4.8
gi|1651216|dbj|BAA13561| (D88209) Pz-peptidase [Bacillus licheni... 32 4.8
gi|3764001|emb|CAA15594| (AL008970) predicted using hexExon; MAL... 31 6.3
gi|2314562|gb|AAD08433| (AE000639) DNA repair protein (recN) [He... 31 6.3
gi|1723436|sp|Q10251|YD23_SCHPO HYPOTHETICAL 119.9 KD PROTEIN C5... 31 6.3
gi|4493892|emb|CAB39001| (AL034558) predicted using hexExon; MAL... 31 6.3
gi|1707030 (U80444) F26B1.1 [Caenorhabditis elegans] 31 6.3
gi|1216294 (L35238) non-muscle tropomyosin [Xenopus laevis] 31 6.3
gi|585379|sp|P33399|LAH1_YEAST LA PROTEIN HOMOLOG (LA RIBONUCLEO... 31 8.3
gi|1256281 (U53180) D1014.4 gene product [Caenorhabditis elegans] 31 8.3
gi|2129335|pir||D64315 type I restriction enzyme homolog - Metha... 31 8.3
gi|4493965|emb|CAB39024| (AL034559) predicted using hexExon; MAL... 31 8.3
gi|2649480 (AE001027) conserved hypothetical protein [Archaeoglo... 31 8.3
gi|3915925|sp|Q57588|Y124_METJA HYPOTHETICAL PROTEIN MJ0124 >gi|... 31 8.3
gi|4240313|dbj|BAA74935| (AB020719) KIAA0912 protein [Homo sapiens] 31 8.3
gi|508233 (U09358) Rca1p [Saccharomyces cerevisiae] 31 8.3
gi|531754|emb|CAA56955| (X81068) probable mitochondrial protein ... 31 8.3
gi|1710045|sp|P40341|RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN ... 31 8.3
>gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL3P7.21 (PFC0960c),
Hypothetical protein, len: 1929 aa [Plasmodium
falciparum]
Length = 1928
Score = 41.4 bits (95), Expect = 0.006
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 7/200 (3%)
Query: 619 IKQLTIAYKNFNMVFNFQKRLSELENEIKEITE--IDEIYQRYLRIKDLDTFMLELLLYS 446
+K+ +N+N + ++ E KEI E + EI Q +I +LD + ++
Sbjct: 1365 LKEKEKIQENYNKINKEHIKIIEELQSYKEIKEKHMKEITQIKEQIHNLDKHIAQI---- 1420
Query: 445 EDLDKNAFINIKRKITLIEKCSLGFYSTILSI----VSSFEFDKNILDSILKIVGEEEER 278
++KN F + L EK S IL +S++E DKNI + +KI E+++
Sbjct: 1421 -QIEKNNF----EESYLKEKNENEKMSNILEEKYKELSTYEIDKNI--NKIKIEDLEKDK 1473
Query: 277 DNIP-RKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRI 101
+NI K E N+K+ K E E + + ++TKE+ +I I + ++I
Sbjct: 1474 ENILLTKNEEINNLKEEYKMVQQHLEDTNVLYEKQKLAIDTITKEKNNI----INECDKI 1529
Query: 100 YTKRKIINLRRKMNHCLISFIDNRFKK 20
K K +N + K N N KK
Sbjct: 1530 KNKNKKLNNKLKENQNNYEHTLNNIKK 1556
>gi|172000 (M84169) homologue of bacterial MutS protein [Saccharomyces
cerevisiae]
Length = 959
Score = 38.3 bits (87), Expect = 0.049
Identities = 36/125 (28%), Positives = 59/125 (46%), Gaps = 3/125 (2%)
Query: 550 LENEIKEITEIDEIYQRYL--RIKDLDTF-MLELLLYSEDLDKNAFINIKRKITLIEKCS 380
L +K++ ++ I Q++ R + L+ M L S ++ K N T + K +
Sbjct: 438 LRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNN-----TSLMKAT 492
Query: 379 LGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEI 200
L S I + S F+KN++D ILK + EEE K +A D + DID +
Sbjct: 493 LK--SQITQLTESLNFEKNLIDDILKFLNEEE-----LAKSQDAKQNADVTRMLDIDVKD 545
Query: 199 KKYTKETE 176
KK + + E
Sbjct: 546 KKESNKDE 553
>gi|730065|sp|P25846|MSH1_YEAST MUTS PROTEIN HOMOLOG 1 >gi|630277|pir||S48962 MSH1 protein - yeast
(Saccharomyces cerevisiae) >gi|529134 (U00059) Yhr120wp
[Saccharomyces cerevisiae]
Length = 959
Score = 38.3 bits (87), Expect = 0.049
Identities = 36/125 (28%), Positives = 59/125 (46%), Gaps = 3/125 (2%)
Query: 550 LENEIKEITEIDEIYQRYL--RIKDLDTF-MLELLLYSEDLDKNAFINIKRKITLIEKCS 380
L +K++ ++ I Q++ R + L+ M L S ++ K N T + K +
Sbjct: 438 LRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNN-----TSLMKAT 492
Query: 379 LGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEI 200
L S I + S F+KN++D ILK + EEE K +A D + DID +
Sbjct: 493 LK--SQITQLTESLNFEKNLIDDILKFLNEEE-----LAKSQDAKQNADVTRMLDIDVKD 545
Query: 199 KKYTKETE 176
KK + + E
Sbjct: 546 KKESNKDE 553
>gi|2191186 (AF007271) contains similarity to tropomyosin and kinesin
[Arabidopsis thaliana]
Length = 1181
Score = 37.5 bits (85), Expect = 0.084
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 559 LSELENEIKEITEIDEIYQRYLRIKDLDTFMLE-------LLLYSEDLDKNAFINIKRKI 401
++ L NE+KE + I + ++D++ + E + L E+ + I +R
Sbjct: 401 VNSLNNELKET--VQRIESKGKELEDMERLIQERSGHNESIKLLLEEHSEELAIKEERHN 458
Query: 400 TLIE---KCSLGFYS---TILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNI 239
+ E K SL S TI + + LDS K + EE + K NE ++
Sbjct: 459 EIAEAVRKLSLEIVSKEKTIQQLSEKQHSKQTKLDSTEKCL--EETTAELVSKENELCSV 516
Query: 238 KDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDK--EILKMNRIYTK-RKIINLRR 68
KDT +E + EIK+ ++ + + + KD K E++K+ T+ K + L++
Sbjct: 517 KDTYRECLQNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKELGLKK 576
Query: 67 KMNHCLISFIDNRFKKLKGEE 5
K H I+ + KKL E
Sbjct: 577 KQIHVRSEKIELKDKKLDARE 597
>gi|3329624 (AF078790) No definition line found [Caenorhabditis elegans]
Length = 197
Score = 37.5 bits (85), Expect = 0.084
Identities = 37/133 (27%), Positives = 64/133 (47%), Gaps = 2/133 (1%)
Query: 568 QKRLSELENEIKE--ITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITL 395
+K S++++E+KE + D+ + K DTF + +D D+ + K+K
Sbjct: 71 KKEKSKMKSEVKEPDAPKKDDKTSDEKKEKQEDTFDA-VKPKQQDADRKKELCDKKKAE- 128
Query: 394 IEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDD 215
+ G Y T I+ + EFDK + ++ K ++ + D K + KD +KEDD
Sbjct: 129 ----NKGDYKTWNKIIENSEFDKTLSENDGKKKKKKNKDDEKDEKKEDTDGKKDEKKEDD 184
Query: 214 IDAEIKKYTKETEGK 170
D KK T+E + K
Sbjct: 185 KDD--KKKTEEDDKK 197
>gi|1934970|emb|CAA70130| (Y08926) AARP1 protein [Plasmodium falciparum]
Length = 3844
Score = 37.5 bits (85), Expect = 0.084
Identities = 50/210 (23%), Positives = 95/210 (44%), Gaps = 16/210 (7%)
Query: 634 KDYADIKQLT-IAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDL-DTFMLE 461
K Y D+ +L+ ++ +++++ N LE + DE Y++ + ++ + F +E
Sbjct: 1585 KIYDDVDRLSSVSSTSYDILMN------HLEESCMYTSYSDETYEKNGNVYNMREGFNVE 1638
Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEE 281
L Y +D+ +N K+ I IE + VS ++L K +
Sbjct: 1639 NLSYDKDI-----LNEKKDIVEIENEKEKYIKINDHTVSRNYGCVSLLKDEPKFSSTDGN 1693
Query: 280 RDNIPRKCNEAXNIKDTEK-------------EDDIDAEIKKYTKETEGKFLSSLTKEQK 140
+NI +CN D K ED + +IK+ K+ +S ++
Sbjct: 1694 NNNIINRCNNNNYYYDNMKHVDVKGGEGEGEGEDSEECQIKESYKK-----MSECNNKEN 1748
Query: 139 DIYDK-EILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGEE 5
I+D +L+ N I +++ N K +C I + DN KK K ++
Sbjct: 1749 IIFDSISVLRKNNI---KRLKNYMCKNKNCYIYYDDNNNKKKKNKK 1791
>gi|2832348|emb|CAA74990| (Y14674) glutamate--cysteine ligase [Plasmodium falciparum]
Length = 1161
Score = 36.7 bits (83), Expect = 0.14
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 304 KIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDK 125
+I + +E+DN PR CN+ N+ D+ DI F+SSL K+ +++
Sbjct: 396 EIENKNKEKDNTPRSCNDYNNVNDSSNTQDI--------------FISSL-KKTDSLFEC 440
Query: 124 EILKMNRI--YTKRKIINLRRKMNHCLISFIDNRFKKLKG 11
E+ K + Y+K +I H + +K +G
Sbjct: 441 EVFKPEQTNKYSKSALITDMTISPHARYVTLTQNIRKRRG 480
>gi|3250878|emb|CAA07354| (AJ006966) gamma-glutamylcysteine synthetase [Plasmodium
falciparum]
Length = 1118
Score = 36.7 bits (83), Expect = 0.14
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 304 KIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDK 125
+I + +E+DN PR CN+ N+ D+ DI F+SSL K+ +++
Sbjct: 354 EIENKNKEKDNTPRSCNDYNNVNDSSNTQDI--------------FISSL-KKTDSLFEC 398
Query: 124 EILKMNRI--YTKRKIINLRRKMNHCLISFIDNRFKKLKG 11
E+ K + Y+K +I H + +K +G
Sbjct: 399 EVFKPEQTNKYSKSALITDMTISPHARYVTLTQNIRKRRG 438
>gi|123661|sp|P02828|HS83_DROME HEAT SHOCK PROTEIN 83 (HSP 82) >gi|2144913|pir||HHFF83 heat shock
protein 83 - fruit fly (Drosophila melanogaster)
>gi|8127|emb|CAA27435| (X03810) hsp 82 [Drosophila
melanogaster]
Length = 717
Score = 36.0 bits (81), Expect = 0.25
Identities = 49/186 (26%), Positives = 84/186 (44%), Gaps = 7/186 (3%)
Query: 574 NFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLL-YSEDLDKNA----FINIK 410
N K+ EL I+E+TE E Y+++ D F L L ED + A F+
Sbjct: 400 NLVKKTMEL---IEELTEDKENYKKFY-----DQFSKNLKLGVHEDSNNRAKLADFLRFH 451
Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCN--EAXNIK 236
+ + CSL Y + + K+ + I GE +++ + +A +
Sbjct: 452 TSASGDDFCSLADYVSRM---------KDNQKHVYFITGESKDQVSNSAFVERVKARGFE 502
Query: 235 DTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNH 56
+ ID + ++ KE +GK L S+TKE ++ + E K R K K +L + M
Sbjct: 503 VVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDKAKFESLCKLMK- 561
Query: 55 CLISFIDNRFKKL 17
S +DN+ +K+
Sbjct: 562 ---SILDNKVEKV 571
>gi|3649757|emb|CAB11106| (Z98547) predicted using hexExon; MAL3P3.5 (PFC0345w), Hypothetical
protein, len: 1712 aa [Plasmodium falciparum]
Length = 1711
Score = 36.0 bits (81), Expect = 0.25
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 592 NFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINI 413
N+ ++ N KRL+ ++N I EI+ + + K+L+ L + + +++ N
Sbjct: 1004 NYYILTN-DKRLN-MDNFINNNLEINNSQNKVIE-KNLEYINNVKLTKTSNYEQSNNTNS 1060
Query: 412 KRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNI---PRKCNEAXN 242
K + + S + LS SS+E++ IL S +N+ +K N+
Sbjct: 1061 KDEHNISSDKSKKEDTLNLSRKSSYEYNNKILQSTSNKSLNGAYENNLFSGKKKKNKGTV 1120
Query: 241 IKDTEKEDDIDAE---------IKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89
+KD E +DI + + KY E E K L L E + E +N+I
Sbjct: 1121 LKDIEHINDIQDKYPEDLNINCVNKYVIENEEKHLLPLELEYNLVSSDEKFGLNKIKNDN 1180
Query: 88 KIINLRRKMNHCLISFIDNRFKKL 17
II ++ + H L + DN+ K +
Sbjct: 1181 NIIYMKHQNYHNL--YDDNQKKHI 1202
>gi|2062377 (U75687) heat shock protein 83 [Drosophila auraria]
Length = 716
Score = 36.0 bits (81), Expect = 0.25
Identities = 48/186 (25%), Positives = 84/186 (44%), Gaps = 7/186 (3%)
Query: 574 NFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLL-YSEDLDKNA----FINIK 410
N K+ EL I+E+TE E Y+++ D F L L ED + A F+
Sbjct: 399 NLVKKTMEL---IEELTEDKENYKKFY-----DQFSKNLKLGVHEDSNNRAKLADFLRFH 450
Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCN--EAXNIK 236
+ + CSL Y + + K + I GE +++ + +A +
Sbjct: 451 TSASGDDFCSLSDYVSRM---------KENQKHVYFITGESKDQVSNSAFVERVKARGFE 501
Query: 235 DTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNH 56
+ ID + ++ KE +GK L S+TKE ++ + + K R K K +L + MN
Sbjct: 502 VVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDDAEKKKREEDKAKFESLCKLMN- 560
Query: 55 CLISFIDNRFKKL 17
+ +DN+ +K+
Sbjct: 561 ---AILDNKVEKV 570
>gi|3845107 (AE001375) hypothetical protein [Plasmodium falciparum]
Length = 1979
Score = 35.6 bits (80), Expect = 0.32
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 1/191 (0%)
Query: 586 NMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE-LLLYSEDLDKNAFINIK 410
N + N++ ++ ELE E+KE+ + K++D E L ED K +
Sbjct: 146 NKIVNYESKIEELEKELKEVKD-----------KNIDNNDYENKLKEKEDFVKQKIDMLN 194
Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDT 230
K L+++ L +K I + I+ +EE NI ++ E ++T
Sbjct: 195 EKENLLQEKELDINKR----------EKKINEKEKNIIKKEETFHNIEKEYLEKNKERET 244
Query: 229 EKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCL 50
+ ID IKK+ ++ K KE + +K++L + + K ++ N +
Sbjct: 245 ISIEIID--IKKHLEKL--KIEIKEKKEDLENLNKKLLSKENVLKELK--GCVKEKNETI 298
Query: 49 ISFIDNRFKKLK 14
S DN +K K
Sbjct: 299 NSLNDNIIEKEK 310
>gi|3845266 (AE001415) hypothetical protein [Plasmodium falciparum]
Length = 1351
Score = 35.6 bits (80), Expect = 0.32
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 310 ILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIY 131
+LK V EEEE++ K E ++ EKE++ D E +K ++ E K KE++D
Sbjct: 863 VLKTV-EEEEKEEEEEKEKEKEEEEEDEKEEEEDKEKEKEEEKEEEK-----DKEEEDEK 916
Query: 130 DKEILKMNRIYTKRK 86
DKE K I K K
Sbjct: 917 DKEKEKEEEIQKKVK 931
>gi|4160296|emb|CAA07715| (AJ007863) gamma-glutamylcysteine synthetase [Plasmodium
falciparum]
Length = 1063
Score = 34.8 bits (78), Expect = 0.56
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 304 KIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTK-EQKDIYD 128
+I + +E+DN PR CN+ N+ D DI K+T+ F + K EQ + Y
Sbjct: 298 EIENKNKEKDNTPRSCNDYNNVNDRTNTQDI---FISSLKKTDSLFECEVFKPEQTNKYS 354
Query: 127 KEIL 116
K L
Sbjct: 355 KSAL 358
>gi|72393|pir||SAZQK1 major merozoite surface antigen precursor - Plasmodium falciparum
(strain K1/Thai)
Length = 1631
Score = 34.8 bits (78), Expect = 0.56
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269
D + N+ + L E SLG I + + +N + ILK E + +
Sbjct: 903 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 962
Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89
K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+
Sbjct: 963 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1013
Query: 88 KII 80
K +
Sbjct: 1014 KTV 1016
>gi|224859|prf||1202270A antigen,major surface [Plasmodium falciparum]
Length = 1631
Score = 34.8 bits (78), Expect = 0.56
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269
D + N+ + L E SLG I + + +N + ILK E + +
Sbjct: 903 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 962
Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89
K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+
Sbjct: 963 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1013
Query: 88 KII 80
K +
Sbjct: 1014 KTV 1016
>gi|1346587|sp|P04933|MSP1_PLAFW MEROZOITE SURFACE PROTEIN 1 PRECURSOR (MEROZOITE SURFACE ANTIGENS)
(PMMSA) (P195) >gi|102354|pir||S05603 major merozoite
surface antigen precursor - Plasmodium falciparum (strain
Palo Alto PLF-3/B11) >gi|9865|emb|CAA26676| (X02919) P195
precursor [Plasmodium falciparum] >gi|9897|emb|CAA33163|
(X15063) gp195 surface antigen preprotein [Plasmodium
falciparum]
Length = 1639
Score = 34.8 bits (78), Expect = 0.56
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269
D + N+ + L E SLG I + + +N + ILK E + +
Sbjct: 912 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 971
Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89
K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+
Sbjct: 972 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1022
Query: 88 KII 80
K +
Sbjct: 1023 KTV 1025
>gi|4455909|emb|CAB36903| (AJ131294) major surface protein-1 [Cloning vector pBSK*-MSP-1s/FCB]
Length = 1639
Score = 34.8 bits (78), Expect = 0.56
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269
D + N+ + L E SLG I + + +N + ILK E + +
Sbjct: 912 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 971
Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89
K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+
Sbjct: 972 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1022
Query: 88 KII 80
K +
Sbjct: 1023 KTV 1025
>gi|84241|pir||A24594 probable major surface antigen (83K, 19K, 42K) precursor - Plasmodium
falciparum >gi|224673|prf||1110241A protein P195
[Plasmodium falciparum]
Length = 1640
Score = 34.8 bits (78), Expect = 0.56
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269
D + N+ + L E SLG I + + +N + ILK E + +
Sbjct: 912 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 971
Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89
K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+
Sbjct: 972 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1022
Query: 88 KII 80
K +
Sbjct: 1023 KTV 1025
>gi|1352937|sp|P47172|YJ9I_YEAST HYPOTHETICAL 39.9 KD PROTEIN IN HOM6-PMT4 INTERGENIC REGION
>gi|1078283|pir||S57164 probable membrane protein
YJR141w - yeast (Saccharomyces cerevisiae)
>gi|1015884|emb|CAA89673| (Z49641) ORF YJR141w
[Saccharomyces cerevisiae]
Length = 347
Score = 34.8 bits (78), Expect = 0.56
Identities = 18/73 (24%), Positives = 38/73 (51%)
Query: 328 KNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTK 149
KN+ D+++ I G+EE+ ++I + E E+ +DA K + + ++++ L
Sbjct: 28 KNLKDTLMSISGDEEQVEDI---------LLPVEVEEKVDASYKFKNRGKDLEWMTKLRS 78
Query: 148 EQKDIYDKEILKM 110
+ IYD I+ +
Sbjct: 79 KSSKIYDSSIMSL 91
>gi|1346586|sp|P04932|MSP1_PLAFK MEROZOITE SURFACE PROTEIN 1 PRECURSOR (MEROZOITE SURFACE ANTIGENS)
(PMMSA) (P190) >gi|929798|emb|CAA27070| (X03371)
precursor for the major merozoite surface antigens
[Plasmodium falciparum]
Length = 1630
Score = 34.8 bits (78), Expect = 0.56
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269
D + N+ + L E SLG I + + +N + ILK E + +
Sbjct: 903 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 962
Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89
K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+
Sbjct: 963 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1013
Query: 88 KII 80
K +
Sbjct: 1014 KTV 1016
>gi|4008441|emb|CAA22448| (AL034488) predicted using Genefinder; cDNA EST yk433c6.3 comes
from this gene; cDNA EST EMBL:D72601 comes from this
gene; cDNA EST EMBL:D75524 comes from this gene; cDNA
EST yk433c6.5 comes from this gene [Caenorhabditis
elegans]
Length = 210
Score = 34.4 bits (77), Expect = 0.73
Identities = 29/96 (30%), Positives = 52/96 (53%), Gaps = 6/96 (6%)
Query: 394 IEKCSLGFYSTILSIVSSFEFDKNILDSILKIVG----EEEERDNIPRKCNEAXN-IKDT 230
IE C L + + ++ S+ K D + VG ++ + +P K NE N ++ T
Sbjct: 79 IEGCKLNNVAIVYTMWSNL---KKTGDMAVGQVGFHSHKQVKHTVVPTKINEIVNRLEKT 135
Query: 229 EKEDDIDAEIKKYTKET-EGKFLSSLTKEQKDIYDKEILKMN 107
++DDID + ++ ++ E + L L +E+KD KE+L N
Sbjct: 136 RRKDDIDYKEERDARDAKERQKLKKLEQERKDREKKEMLAQN 177
>gi|1710782|sp|P52498|RSR1_CANAL RAS-RELATED PROTEIN RSR1 >gi|1203834 (U46158) Rsr1p [Candida
albicans]
Length = 248
Score = 34.0 bits (76), Expect = 0.96
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 547 ENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLIEKCSL-GF 371
EN +KE+ + E + LRIKD D + L+ DL+ + ++I+ + + + L F
Sbjct: 87 ENSLKELLALRE---QVLRIKDSDNVPMVLVGNKCDLEDDRVLSIEDGVKVSQDWGLVPF 143
Query: 370 YSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKY 191
Y T S + D+ +D + +I+ +E + +K + + +++ + DAE +
Sbjct: 144 YET--SAMYKTNVDEAFIDVVRQIM-RKEAAISAEKKQQKELQKQQQQQQQEQDAE-GQQ 199
Query: 190 TKETEGKFLSSLTKEQKD 137
++ GK SS T QKD
Sbjct: 200 QQQKSGKSKSSAT--QKD 215
>gi|1170659|sp|P33174|KIF4_MOUSE KINESIN-LIKE PROTEIN KIF4 >gi|1083417|pir||A54803
microtubule-associated motor KIF4 - mouse
>gi|563773|dbj|BAA02167| (D12646) KIF4 [Mus musculus]
Length = 1231
Score = 33.6 bits (75), Expect = 1.3
Identities = 31/150 (20%), Positives = 66/150 (43%), Gaps = 3/150 (2%)
Query: 568 QKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITL-I 392
+KRL ELE +I ++ + + + L++K+ + L + KN + + R++
Sbjct: 600 RKRLQELEGQIADLKKKLQEQSKLLKLKESTEHTVSKLNQEIRMMKNQRVQLMRQMKEDA 659
Query: 391 EKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDI 212
EK ++ E D+ +LK+ +++ N+ R+ E + +D +
Sbjct: 660 EKFRQWKQQKDKEVIQLKERDRKRQYELLKLERNFQKQSNVLRRKTEEAAAANKRLKDAL 719
Query: 211 --DAEIKKYTKETEGKFLSSLTKEQKDIYDKEI 119
E+ + KET+ + + S K+ EI
Sbjct: 720 QKQKEVAEKRKETQSRGMESTAARMKNWLGNEI 752
>gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococcus jannaschii >gi|1591962
(U67572) purine NTPase [Methanococcus jannaschii]
Length = 1005
Score = 33.2 bits (74), Expect = 1.6
Identities = 44/211 (20%), Positives = 97/211 (45%), Gaps = 17/211 (8%)
Query: 640 IIKDYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE 461
I K++ DI++L ++N +++ +K +++LE + + E+ + L+I + D +
Sbjct: 220 IKKEFEDIEKLFNEWENKKLLY--EKFINKLEERKRAL----ELKNQELKILEYDLNTVV 273
Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSL------GFYSTILSIVSSFEFDKNILDSILKI 299
+ + K+ + K + I K Y L + E K ++ + +
Sbjct: 274 EARETLNRHKDEYEKYKSLVDEIRKIESRLRELKSHYEDYLKLTKQLEIIKGDIEKLKEF 333
Query: 298 VGEEEERDNIPRKCNEAXNIKD----TEKEDDIDAEIKKYTKETEG-KFLSSLTKEQKDI 134
+ + + RD+I IKD E D+ E+K +E E + + +E K+
Sbjct: 334 INKSKYRDDIDNLDTLLNKIKDEIERVETIKDLLEELKNLNEEIEKIEKYKRICEECKEY 393
Query: 133 YDK------EILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGE 8
Y+K + ++ N++ + + +K I+ ++ R KL E
Sbjct: 394 YEKYLELEEKAVEYNKLTLEYITLLQEKKSIEKNINDLETRINKLLEE 441
>gi|1118176 (U41992) coded for by C. elegans cDNA yk113g4.3; coded for by C.
elegans cDNA yk113g4.5; coded for by C. elegans cDNA
yk113c6.5; coded for by C. elegans cDNA yk105f7.5; coded
for by C. elegans cDNA yk73g12.5 [Caenorhabditis
elegans]
Length = 374
Score = 33.2 bits (74), Expect = 1.6
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 292 EEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILK 113
+EEE +K ++ + E+EDD + E+ K K+T+ K + T E++D ++E++K
Sbjct: 229 DEEEEPVATKKSKKSKRAETPEEEDDEEEEVVKTPKKTK-KSKRAETPEEEDEVEEEVVK 287
>gi|2947228 (AF031886) erythrocyte binding protein [Plasmodium yoelii yoelii]
Length = 1701
Score = 32.8 bits (73), Expect = 2.2
Identities = 25/97 (25%), Positives = 48/97 (48%)
Query: 292 EEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILK 113
EE +R +K E + EK+ + + +I + K+ E + + + ++++ E++K
Sbjct: 1469 EERKRIEAVKKAEEERKRIEAEKKAEEERKIIEAAKKAEEERIKAEAVKKEE----EVIK 1524
Query: 112 MNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGEEF 2
N ++ KI N N+ + DN FKKL EE+
Sbjct: 1525 KNSNLSETKISN-----NYETRNIDDNSFKKLDEEEY 1556
>gi|603664 (U14101) putative reverse transcriptase; ORF2; encodes aa motifs
conserved in reverse transcriptases; most closely
related reverse transcriptases are those of non-LTR
retrotransposons. The 3' 901 bp of this CDS are
identical to the 3' 901 bp ...
Length = 1084
Score = 32.8 bits (73), Expect = 2.2
Identities = 45/170 (26%), Positives = 72/170 (41%), Gaps = 6/170 (3%)
Query: 577 FNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSED-LDKNAFINIKRKI 401
F+ K L E I ++ + L +LDT L L + + L KN I + +K+
Sbjct: 207 FSICKGLGRFEKRISSGADLSSDHLPILLEINLDTNTLFLQKQNNNILKKNTNIELFKKV 266
Query: 400 T---LIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDT 230
++ + I +S+F KNI DS + RDN R+ +A T
Sbjct: 267 LERKILLNTEIRVAEDINDAISTFM--KNIKDSAAESTPSPRIRDNPRRRHRQANRNSHT 324
Query: 229 EKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKM--NRIYTKRKIINLRR 68
D+ + + + E + LS + K K+ DK LK NR+ KI+ R
Sbjct: 325 LALDENTSRLLE-----EKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENR 375
>gi|5094|emb|CAA26191| (X02331) SPRAS-protein [Schizosaccharomyces pombe]
Length = 219
Score = 32.5 bits (72), Expect = 2.8
Identities = 19/64 (29%), Positives = 31/64 (47%)
Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416
+ F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++
Sbjct: 81 QGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 132
Query: 415 IKRK 404
+ +
Sbjct: 133 RRER 136
>gi|68942|pir||TVBYSR transforming protein ras - fission yeast (Schizosaccharomyces
pombe) (strain JY282)
Length = 219
Score = 32.5 bits (72), Expect = 2.8
Identities = 19/64 (29%), Positives = 31/64 (47%)
Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416
+ F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++
Sbjct: 81 QGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 132
Query: 415 IKRK 404
+ +
Sbjct: 133 RRER 136
>gi|3845128 (AE001381) hypothetical protein [Plasmodium falciparum]
Length = 508
Score = 32.5 bits (72), Expect = 2.8
Identities = 30/109 (27%), Positives = 49/109 (44%)
Query: 448 SEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNI 269
++ +DKN INI + + + +STI ++ S +K I ++LK +E NI
Sbjct: 210 NQHIDKNKNINININLHDDKNDEIRKHSTIQTLYHSNNKEKIISKNVLK-----DESTNI 264
Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKE 122
++CN K DD + K+ +E E K IY+KE
Sbjct: 265 TKECN-------VNKYDDNIIDHKQKHREKEKKKSIENMNISHIIYEKE 306
>gi|461698|sp|P33322|CBF5_YEAST CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 (CENTROMERE-BINDING
FACTOR 5) (NUCLEOLAR PROTEIN CBF5) (P64')
>gi|542251|pir||S41853 centromere/microtubule-binding
protein CBF5 - yeast (Saccharomyces cerevisiae)
>gi|311097 (L12351) centromere/microtubule binding
protein [Saccharomyces cerevisiae] >gi|577203 (U17246)
Cbf5p: centromere/microtubule binding protein
[Saccharomyces cerevisiae]
Length = 483
Score = 32.5 bits (72), Expect = 2.8
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 2/57 (3%)
Query: 292 EEEERDNIPRKCNEAXNIKD--TEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKE 122
E +E + P+K E IK+ TEKE+ + + KK KE + K KE+KD +K+
Sbjct: 401 ETKETEEEPKKAKEDSLIKEVETEKEEVKEDDSKKEKKEKKDKKEKKEKKEKKDKKEKK 459
>gi|1722855|sp|P50532|XCPC_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-C >gi|1079281|pir||A55094
chromosomal protein XCAP-C - African clawed frog
>gi|563812 (U13673) XCAP-C [Xenopus laevis]
Length = 1290
Score = 32.5 bits (72), Expect = 2.8
Identities = 32/154 (20%), Positives = 74/154 (47%), Gaps = 1/154 (0%)
Query: 565 KRLSELENEIKEITE-IDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLIE 389
K L ++E ++ +IT+ I+E +++ ++ D E L +S+ K +++ ++
Sbjct: 361 KALKDVEKQLNKITKFIEENREKFTQLDLQDVDTREKLKHSKSKVKKLQKQLQKDKEKVD 420
Query: 388 KCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDID 209
+ KN+ + KI+ EE + ++ K E K+ EK ++
Sbjct: 421 EL------------------KNVPANSQKIIAEETNKKDLLEKQKE----KEEEKLKNVM 458
Query: 208 AEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNR 104
+K KET+G +E+K++ +KE++++++
Sbjct: 459 DSLK---KETQG------LQEEKEVKEKELMEISK 484
>gi|1208849 (U50066) T14A8.1 gene product [Caenorhabditis elegans]
Length = 349
Score = 32.5 bits (72), Expect = 2.8
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 565 KRLSELENE--IKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLI 392
KR +LE + +KE + E ++Y IKDL+ + E S++ DK +KRK
Sbjct: 195 KRSEQLEEDPSVKEAVGLTETNEQY--IKDLEVALKEFQSLSKEYDKAKMKKLKRKD--- 249
Query: 391 EKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNI--------- 239
S E D+ S L + EEEE +K +
Sbjct: 250 ------------SSSDEDEEDEEENSSELSEIEEEEEEVKPVKKSKSSSQSVGKRKNRPK 297
Query: 238 KDTEKEDDIDAEIKKYTK--ETEGKFLSSLTKE--QKDIYDKEI 119
+E+ED+ + E +K + E EG + S +E +K+ DK +
Sbjct: 298 STSEEEDEGEEESRKVAEDAEEEGIDIDSEIREHAEKEKKDKNV 341
>gi|3123259|sp|P08647|RAS_SCHPO RAS-LIKE PROTEIN 1 >gi|2330716|emb|CAB11218| (Z98597) Ras1p
[Schizosaccharomyces pombe]
Length = 219
Score = 32.1 bits (71), Expect = 3.7
Identities = 19/60 (31%), Positives = 29/60 (47%)
Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416
+ F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++
Sbjct: 81 EGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 132
>gi|172361 (K01970) RAS1 protein [Saccharomyces cerevisiae]
Length = 309
Score = 32.1 bits (71), Expect = 3.7
Identities = 31/145 (21%), Positives = 64/145 (43%), Gaps = 2/145 (1%)
Query: 523 EIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVS 344
E+ YQ+ R+KD D + ++ DL+ ++ + + L ++ + F T S
Sbjct: 99 ELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLET--SAKQ 156
Query: 343 SFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFL 164
+ D+ I + + + +++ R+ + I+D+E A+I+ K+ G ++
Sbjct: 157 AINVDEAFYSLIRLVRDDGGKYNSMNRQLDNTNEIRDSELTSSATADIE---KKNNGSYV 213
Query: 163 --SSLTKEQKDIYDKEILKMNRIYTKR 89
+SLT K + N TKR
Sbjct: 214 LDNSLTNAGTGSSSKSAVNHNGETTKR 240
>gi|3845309 (AE001424) RESA-H3 antigen [Plasmodium falciparum]
Length = 1558
Score = 32.1 bits (71), Expect = 3.7
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 640 IIKDYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE 461
+IKD +K+L A + + LE I+E +I + +KD++ +E
Sbjct: 1025 LIKDMEKLKELEKALSEDSKEI-IDAKDDTLEKVIEEEHDITTTLDEVVELKDVEEDKIE 1083
Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEE 281
+ +DL+++ +K +I +E L Y + +I + +K +E E
Sbjct: 1084 KVSDLKDLEEDILKEVK-EIKELESEILEDYKELKTIETDILEEK-----------KEIE 1131
Query: 280 RDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGK 170
+D+ + EA IKD E DI E+ E E K
Sbjct: 1132 KDHFEKFEEEAEEIKDLEA--DILKEVSSLEVEEEKK 1166
>gi|3878857|emb|CAB05583| (Z83120) predicted using Genefinder; cDNA EST EMBL:D35016 comes
from this gene; cDNA EST EMBL:D32583 comes from this
gene; cDNA EST EMBL:D35258 comes from this gene; cDNA
EST EMBL:C11471 comes from this gene; cDNA EST
EMBL:C136...
Length = 837
Score = 32.1 bits (71), Expect = 3.7
Identities = 30/107 (28%), Positives = 54/107 (50%)
Query: 442 DLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPR 263
++D+ A I+RK + K +G +++S +LD+++K GE E+D +
Sbjct: 449 EIDEEAEKLIERKFNV--KLRVGTDRSLISY--------RLLDAVVK--GEVVEKD---K 493
Query: 262 KCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKE 122
K EA I+ + DD DA++K+ E +GK + E D+ D +
Sbjct: 494 KSEEAREIEAIDV-DDGDADVKQEVVEKDGKAEEAPEHEAMDVEDDD 539
>gi|2764713|emb|CAA05353| (AJ002379) sigma 70 [Campylobacter jejuni]
Length = 622
Score = 32.1 bits (71), Expect = 3.7
Identities = 36/158 (22%), Positives = 78/158 (48%), Gaps = 16/158 (10%)
Query: 547 ENEIKEITEIDEIYQRYLRI--------KDLDTFMLELLLYSEDLDKNAFINIKRKITLI 392
EN++ E + D + YLR KD + + + + ED+ +AF ++ I I
Sbjct: 93 ENDLLEWSRSDSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFI 152
Query: 391 ---EKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKE 221
++ + + + SF+ ++ D + ++ +E+E + + +E K+++KE
Sbjct: 153 LDYKEPLINRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKE 212
Query: 220 DD----IDAEIKKYTKETEGKFLSSLTKEQKD-IYDKEILKMNRIYTKRKIINL 74
D+ + + K K + +S KE D + DK + + K K+++L
Sbjct: 213 DERTLKVIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDL 266
>gi|68941|pir||TVBYPR transforming protein ras - fission yeast (Schizosaccharomyces
pombe) >gi|5036|emb|CAA27399| (X03771) put. ras protein
[Schizosaccharomyces pombe]
Length = 214
Score = 32.1 bits (71), Expect = 3.7
Identities = 19/60 (31%), Positives = 29/60 (47%)
Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416
+ F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++
Sbjct: 76 EGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 127
>gi|2132082|pir||S67087 hypothetical protein YOR195w - yeast (Saccharomyces cerevisiae)
>gi|1420465|emb|CAA99408| (Z75103) ORF YOR195w
[Saccharomyces cerevisiae]
Length = 821
Score = 32.1 bits (71), Expect = 3.7
Identities = 42/145 (28%), Positives = 79/145 (53%), Gaps = 18/145 (12%)
Query: 631 DYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEI--------DEIYQRYLRIKDLD 476
DY D QL I + NF +V KR EL ++I + ++ + + +Y ++
Sbjct: 292 DYDDDNQLDIRHDNFQIV---AKRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNH 348
Query: 475 TFMLELLLYSEDLDKNAFINIKRK--ITLIEKCS--LGFYSTILSIVSSFE------FDK 326
+++L +E LDK +N +R+ I +EK + +T + +++S + FD
Sbjct: 349 QLLIDLT--NEKLDK---LNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDA 403
Query: 325 NILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIK 197
+I + + I GE E N ++ + N K+ E E ++ AE+K
Sbjct: 404 SITE-VNHIKGEHENTVNTLQQNEKILNDKNVELE-NMKAELK 444
>gi|530446|emb|CAA83773| (Z33128) DNA repair protein RecM [Mycoplasma capricolum]
Length = 107
Score = 32.1 bits (71), Expect = 3.7
Identities = 17/54 (31%), Positives = 32/54 (58%), Gaps = 2/54 (3%)
Query: 190 TKETEGKFLSSL--TKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDNR 29
TK+T + L +L K++ D + ++ K+N++ + KI + N CL+ +DNR
Sbjct: 20 TKKTSERLLVNLLLNKDKLDEFINQLNKVNQLISTCKICGYLSENNKCLVCSLDNR 75
>gi|3549665|emb|CAA20576| (AL031394) hypothetical protein [Arabidopsis thaliana]
Length = 750
Score = 32.1 bits (71), Expect = 3.7
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 361 ILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKE 182
++ + + DK+ + +++ + +EE+ +N +I+D + EDD AEI + +
Sbjct: 413 VMKVTAPGRVDKDFISKVIEQIADEEDEEN-------DLDIEDIDVEDDTKAEIDEKNAD 465
Query: 181 TEGKFLSSLTKE 146
E L S+T E
Sbjct: 466 IE---LESVTDE 474
>gi|2688777 (AE001181) exonuclease SbcC (sbcC) [Borrelia burgdorferi]
Length = 950
Score = 31.7 bits (70), Expect = 4.8
Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 29/209 (13%)
Query: 640 IIKDYADIKQLT-IAYKNFNMVFNFQKRLSELENEIKEITEI-----DEIYQRYLRIKDL 479
+ D+ +K L + + FN + LS++ N ++EI ++ + Y + L K+
Sbjct: 299 LCSDFWSLKNLVAVQGELFNDIGLLDLELSKVMNNLEEIKDLYSNDFNFNYVKELYNKNC 358
Query: 478 DTFMLELL---LYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSI 308
+ F L+L+ S L KN+ + K+++ + +I S S+F+FDK +
Sbjct: 359 NLFNLKLVENDYQSLLLRKNSLEDEKKELLRSQSKKNDEIKSISSEKSNFDFDKYVYYEA 418
Query: 307 LKIVGEEEERDNIPRKCNEAXN--IKDTEKED------------DIDAEIKKY------T 188
LK+ + D + K + +K T KED D+ E+ KY +
Sbjct: 419 LKLF--QTFNDELISKYRDRLEFLLKSTGKEDFNKNKEKNIIKIDLYKELLKYLDDKNFS 476
Query: 187 KETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLK 14
E++ + L + E K+ K+ L + + +++ L K++ I N+ +LK
Sbjct: 477 IESDKEKLKYIEAEYKNYQHKDKLSLCSL---KELYALNSKLH-----LIQNQIDELK 526
>gi|3764023|emb|CAA15616| (AL008970) predicted using hexExon; MAL3P4.26 (PFC0435w),
Hypothetical protein, len: 1295 aa [Plasmodium
falciparum]
Length = 1294
Score = 31.7 bits (70), Expect = 4.8
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 508 YQRYLRIK-DLDTFMLELLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEF 332
Y +Y I + D + + +E++ N+ K K+ I Y T+L +
Sbjct: 459 YDKYHMINLENDIKLKHYIKETEEIHFNSIEEYKMKLNRINYK----YDTLLEEHENLVT 514
Query: 331 DKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTE---KEDDIDAEIKKYTKETEGKFLS 161
KNIL I + EEER IP N N ++T+ + D ++K+ K T G + +
Sbjct: 515 HKNILIGIKTSINTEEER--IPHIKNTYDNKENTQIIFNTFNYDNKLKE--KNTFGFYNN 570
Query: 160 SLTKEQKD--------IY--DKEILKMNRIYTKRKIIN---LRRKMNHCLISFIDNRFKK 20
SL + + IY DKE K + +Y K+ + L K+ H + + + K
Sbjct: 571 SLLQNALENDNIDLDIIYMSDKESQKYDNLYFNSKVTSKEGLCEKLKHMIYYYYEEYVMK 630
>gi|4100186|gb|AAD00774| (U95159) gelsolin-related protein GRP125 [Dictyostelium discoideum]
Length = 1087
Score = 31.7 bits (70), Expect = 4.8
Identities = 19/75 (25%), Positives = 36/75 (47%)
Query: 298 VGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEI 119
V EEE ++ + E +KE++++ EIK+ TKE E TKE + D+++
Sbjct: 846 VKEEEVKEEVKEVKEEVKEEVKQDKEEEVNEEIKEETKEEE-------TKEDDNKEDEKV 898
Query: 118 LKMNRIYTKRKIINL 74
+ N + + +
Sbjct: 899 NEENETVNEENEVGI 913
>gi|4499900|emb|CAB39319| (AJ133736) BM-40 [Drosophila melanogaster]
Length = 304
Score = 31.7 bits (70), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 352 IVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEI 200
+ +S EF +++LD L + +E + R E IKD E+E++I ++
Sbjct: 18 VQASTEFSEDLLDEDLDLSDIDENEEEFLRLLEEKNKIKDIERENEIATKL 68
>gi|2633508|emb|CAB13011| (Z99110) similar to oligoendopeptidase [Bacillus subtilis]
Length = 609
Score = 31.7 bits (70), Expect = 4.8
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 337 EFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSS 158
E KN D++ K G+ K A + T K+D+ A +KKY E ++
Sbjct: 217 EVRKNAFDAVYKTYGQY--------KNTMATTLSGTVKKDNFYARVKKYKSAREAALSNN 268
Query: 157 LTKEQKDIYDKEILKMNR-IYTKRKIINLRRKM 62
E ++YD + +N+ + + I LR+K+
Sbjct: 269 SIPE--EVYDNLVKTINKHLPLLHRYIALRKKV 299
>gi|2425133 (AF020282) DG2033 gene product [Dictyostelium discoideum]
Length = 1271
Score = 31.7 bits (70), Expect = 4.8
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 547 ENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKN--------AFI------NIK 410
ENEIK IT I Q + K++ + +L+ +++ N FI N
Sbjct: 119 ENEIKNITIIISKIQNLIFNKEIYSTCCQLINGISNINNNNNNSNKYGLFIVNNILNNEN 178
Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDT 230
+++IEK S+ FY T++ ++ + +I++ K ++ + + + N+
Sbjct: 179 LSLSIIEKMSIEFYPTLIPVIIENLENSSIINQYTK----QQSLSILSKILLDKNNVSII 234
Query: 229 EKEDDIDAEIKKYTKETEG-KFLSSLTKEQKDIYD--KEILKMNRIYTKRKIINLRRKMN 59
E +I K +T K L + +QKDI + K ++ Y + NL++K N
Sbjct: 235 ENN-----QILKSLYQTNWLKLLWNAIVKQKDINERLKLCFFFHQCYFDCLLFNLKKKSN 289
>gi|1651216|dbj|BAA13561| (D88209) Pz-peptidase [Bacillus licheniformis]
Length = 628
Score = 31.7 bits (70), Expect = 4.8
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 337 EFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSS 158
E KN D++ K G+ K A + T K+D+ A +KKY E ++
Sbjct: 236 EVRKNAFDAVYKTYGQY--------KNTMATTLSGTVKKDNFYARVKKYKSAREAALSNN 287
Query: 157 LTKEQKDIYDKEILKMNR-IYTKRKIINLRRKM 62
E ++YD + +N+ + + I LR+K+
Sbjct: 288 SIPE--EVYDNLVKTINKHLPLLHRYIALRKKV 318
>gi|3764001|emb|CAA15594| (AL008970) predicted using hexExon; MAL3P4.3 (PFC0560c),
Hypothetical protein, len: 785 aa [Plasmodium
falciparum]
Length = 784
Score = 31.3 bits (69), Expect = 6.3
Identities = 27/98 (27%), Positives = 49/98 (49%), Gaps = 2/98 (2%)
Query: 325 NILDSILKIVGEEEERD--NIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLT 152
++ D+I IV EE ++D ++PRK + K E +++ + + K+Y + K
Sbjct: 381 SLTDTIFYIV-EENDKDLHDVPRK-EKKIYAKYKEGQEEQEKKNKRYDNSDDKK---GSE 435
Query: 151 KEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDN 32
E ++Y+KE + Y +KI K+N I+F N
Sbjct: 436 YEHVNLYNKEDKTLTLQYKNKKIPTSHDKLNKHNITFYKN 475
>gi|2314562|gb|AAD08433| (AE000639) DNA repair protein (recN) [Helicobacter pylori 26695]
Length = 524
Score = 31.3 bits (69), Expect = 6.3
Identities = 25/104 (24%), Positives = 52/104 (49%), Gaps = 9/104 (8%)
Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDK----- 431
K++ + + ++RL ++NE+ + EID + Y K+++ E L E++
Sbjct: 296 KDYGSIMHAKERLGHVKNELHNLKEIDSHCETY--HKEIERLKTECLKLCEEISGFRKEY 353
Query: 430 ----NAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEE 284
NA ++ K K L++ SL +S + + N+ +S L+ + E
Sbjct: 354 LAGFNALLSAKAKDLLLKSPSLVLEDAPMSEKGAQKLVLNLQNSQLETLSSGE 406
>gi|1723436|sp|Q10251|YD23_SCHPO HYPOTHETICAL 119.9 KD PROTEIN C56F8.03 IN CHROMOSOME I
>gi|1204225|emb|CAA93574| (Z69728) unknown
[Schizosaccharomyces pombe]
Length = 1079
Score = 31.3 bits (69), Expect = 6.3
Identities = 20/76 (26%), Positives = 35/76 (45%)
Query: 337 EFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSS 158
E ++ I + +I EE+ + E +K EKE KK + +GK+LS
Sbjct: 262 EEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERK-----KKEEMKAQGKYLSK 316
Query: 157 LTKEQKDIYDKEILKM 110
KEQ+ + + + +M
Sbjct: 317 KQKEQQALAQRRLQQM 332
>gi|4493892|emb|CAB39001| (AL034558) predicted using hexExon; MAL3P2.14 (PFC0225c),
Elongation factor (TS), len: 350 aa; Similarity to
elongation factor TS. Aquifex elongation factor TS
(SW:EFTS_AQUAE) BLAST Score: 161, sum P(2) = 4.9e-19,
30% identit...
Length = 349
Score = 31.3 bits (69), Expect = 6.3
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 493 RIKDLDTFMLELLLYSEDLDKNA----FINIKRKITLIEKCSLGF-------------YS 365
+IKD +LELL S+ + +N F+ +TL S+G Y+
Sbjct: 117 QIKDDKIVLLELLTDSDFVARNKMFVQFVYSLLNVTLDNDLSVGNCKNAGDNKNSEDGYT 176
Query: 364 TILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTK 185
T +I+S+ NI+D IL + +EE + + +++ +ED KY+K
Sbjct: 177 TSGNILSN----NNIMDEILSLPYVDEENKSNSTMREQLNYLRNIFREDIKIGRFSKYSK 232
Query: 184 ETEGKFL 164
+ +FL
Sbjct: 233 KNPNEFL 239
>gi|1707030 (U80444) F26B1.1 [Caenorhabditis elegans]
Length = 261
Score = 31.3 bits (69), Expect = 6.3
Identities = 20/69 (28%), Positives = 33/69 (46%)
Query: 265 RKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRK 86
+K E+ K T+KE+D D+E K K+ + K +KD+ D E N K+K
Sbjct: 47 KKKKESKKRKKTQKEEDCDSESIKQKKKKARVKKKEVRKSKKDVEDDED-DSNSKSAKKK 105
Query: 85 IINLRRKMN 59
+ + + N
Sbjct: 106 AVKVAKVYN 114
>gi|1216294 (L35238) non-muscle tropomyosin [Xenopus laevis]
Length = 248
Score = 31.3 bits (69), Expect = 6.3
Identities = 28/64 (43%), Positives = 36/64 (55%), Gaps = 8/64 (12%)
Query: 313 SILKIVGEEEERDNIPR--KCNEAXNIKDTEKEDDIDAEIKKYT-----KETEGKFLS-S 158
S LK EEE N+ K EA + K +EKED + EIK T ET +F +
Sbjct: 150 SELKCSDLEEELKNVTNNLKSLEAQSEKYSEKEDKYEEEIKILTDKLKEAETRAEFAERT 209
Query: 157 LTKEQKDIYDKE 122
+TK +K I D E
Sbjct: 210 VTKHEKAIDDLE 221
>gi|585379|sp|P33399|LAH1_YEAST LA PROTEIN HOMOLOG (LA RIBONUCLEOPROTEIN) (LA AUTOANTIGEN HOMOLOG)
>gi|1078375|pir||B48600 RNA-binding protein LAH1 - yeast
(Saccharomyces cerevisiae) >gi|458557 (L13282) La
homolog [Saccharomyces cerevisiae] >gi|493220 (L33023)
La protein homologue; phenotype: not essential for
vegetative growth [Saccharomyces cerevisiae]
>gi|1431044|emb|CAA98612| (Z74099) ORF YDL051w
[Saccharomyces cerevisiae]
Length = 275
Score = 30.9 bits (68), Expect = 8.3
Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 30/204 (14%)
Query: 619 IKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSED 440
+KQ+ + FN ++ R + +N+ + R + + +D ++E L SE
Sbjct: 34 LKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRPVDK-VIEALRSSEI 92
Query: 439 LDKNAF-INIKRKITL---------IEK-----CSLGFYSTILSIVSSFEFDKNILDSIL 305
L+ +A N+KR++ L IE+ + F + E +N L++
Sbjct: 93 LEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPELQEN-LEAFF 151
Query: 304 KIVGEEEE----RDNIPRKCN-----EAXNIKDTE------KEDDIDAEIKKYTKETEGK 170
K +GE + RD+ +K N E I + E DD EI Y EGK
Sbjct: 152 KKLGEINQVRLRRDHRNKKFNGTVLVEFKTIPECEAFLKSYSNDDESNEILSY----EGK 207
Query: 169 FLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGE 8
LS LTK+Q D+ +E K + + N +K N L F N+ K K E
Sbjct: 208 KLSVLTKKQFDL-QREASKSKNFSGRSRSFNGHKKKN--LPKFPKNKKKNGKEE 258
>gi|1256281 (U53180) D1014.4 gene product [Caenorhabditis elegans]
Length = 202
Score = 30.9 bits (68), Expect = 8.3
Identities = 18/63 (28%), Positives = 41/63 (64%), Gaps = 5/63 (7%)
Query: 328 KNILDSILKIVGEEEERDNIP----RKCNEAXNIKDTEKE-DDIDAEIKKYTKETEGKFL 164
+++ + +L +V E + +DN R+ +EA +K+++K + ++A +Y + +G+F
Sbjct: 33 ESLENRLLDVVEENDRKDNENSERIRQLDEA--LKESQKRVEQLEAACFRYKNQAKGEFA 90
Query: 163 SSLTKEQK 140
SS+ E+K
Sbjct: 91 SSIKSEEK 98
>gi|2129335|pir||D64315 type I restriction enzyme homolog - Methanococcus jannaschii
Length = 1163
Score = 30.9 bits (68), Expect = 8.3
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 451 YSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDN 272
+ E + + F I ++I I K Y I SI S +K I+ I ++ + +
Sbjct: 341 FYEAIQEKKFKTILKRIDSINK----LYEVIKSIKMSELSNKVIVRGIYTTTIQKFQYE- 395
Query: 271 IPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKD--------------- 137
R E N K+ +K+D+ D ++ K +E K L KE+K+
Sbjct: 396 --RSKKEKDNNKEKDKDDE-DLDLSKPIEEIIKKIEDKLKKEEKEGKIKGLKDLLIILAF 452
Query: 136 IYDKEILKMNRIYTKRKIINLRR 68
IY K + + N K+ I NL++
Sbjct: 453 IYLKHLKEKNPEEYKKHIENLKK 475
>gi|4493965|emb|CAB39024| (AL034559) predicted using hexExon; MAL3P7.4 (PFC0875w), Hypothetical
protein, len: 3004 aa [Plasmodium falciparum]
Length = 3003
Score = 30.9 bits (68), Expect = 8.3
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 7/195 (3%)
Query: 595 KNFNMVFNFQKRLSELE--NEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAF 422
KN N F F ++L L+ N + E IY+ Y E +D N +
Sbjct: 2227 KNRNPFFYFIQKLFNLKRGNNVDENNTTMGIYK-----------------YGEKVDSNNY 2269
Query: 421 I-----NIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKC 257
I NI ++ Y L+ + +FD N +D ++I + ++ + K
Sbjct: 2270 ISEDEININNQLNSEGYLKNDIYMNELNDNYNNDFDDNTVDIEMQISEKSNIKEKMLYKE 2329
Query: 256 NEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIIN 77
E + +DD D E K + K ++ L +L + ++ +IYT I N
Sbjct: 2330 TEIDKYYKGQSDDDNDEE-KNFNKISQKYILKNLNIK---------MRPYKIYTFSSIFN 2379
Query: 76 LRRKMNHCLISFIDNRFKKLKG 11
+ + F N LKG
Sbjct: 2380 NDLNILYFFKYFFCNNKDNLKG 2401
>gi|2649480 (AE001027) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 288
Score = 30.9 bits (68), Expect = 8.3
Identities = 31/97 (31%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Query: 367 STILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYT 188
+ I+SIV + FD + K+V EEE RD + RK E I DTE+ ++ + Y
Sbjct: 103 AVIVSIVGN-NFDYGVQGH--KVV-EEEFRDFLKRKVQEGLKINDTERIKELSSGKVVYL 158
Query: 187 KETEGK--FLSSLTKEQKDIYDKEILKMNRIYTKRKIIN 77
+ G+ F + L KE K + K+ + R II+
Sbjct: 159 TDNAGEIFFDTLLMKEIK----RRCEKLTAVVRGRPIIS 193
>gi|3915925|sp|Q57588|Y124_METJA HYPOTHETICAL PROTEIN MJ0124 >gi|2826244 (U67469) type I
restriction-modification enzyme 2, R subunit
[Methanococcus jannaschii]
Length = 1075
Score = 30.9 bits (68), Expect = 8.3
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 451 YSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDN 272
+ E + + F I ++I I K Y I SI S +K I+ I ++ + +
Sbjct: 253 FYEAIQEKKFKTILKRIDSINK----LYEVIKSIKMSELSNKVIVRGIYTTTIQKFQYE- 307
Query: 271 IPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKD--------------- 137
R E N K+ +K+D+ D ++ K +E K L KE+K+
Sbjct: 308 --RSKKEKDNNKEKDKDDE-DLDLSKPIEEIIKKIEDKLKKEEKEGKIKGLKDLLIILAF 364
Query: 136 IYDKEILKMNRIYTKRKIINLRR 68
IY K + + N K+ I NL++
Sbjct: 365 IYLKHLKEKNPEEYKKHIENLKK 387
>gi|4240313|dbj|BAA74935| (AB020719) KIAA0912 protein [Homo sapiens]
Length = 1300
Score = 30.9 bits (68), Expect = 8.3
Identities = 44/165 (26%), Positives = 75/165 (44%), Gaps = 9/165 (5%)
Query: 640 IIKDYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE 461
+ K + +QL AY+ ++ SEL+ KE+T + E Y R KD LE
Sbjct: 626 LAKHALEKQQLFEAYERTHLQLR-----SELDKLNKEVTAVQECYLEVCREKD----NLE 676
Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILD--------SIL 305
L L + +K K K LI++ + S + + + + K LD +
Sbjct: 677 LTL-RKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMK--KKTLDCGSQTDQVTTS 733
Query: 304 KIVGEEEERDNI-PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKE 146
++ ++E I +KC N+ + EK+ I +KK E E K ++TK+
Sbjct: 734 DVISKKEMAIMIEEQKCTIQQNL-EQEKDIAIKGAMKKLEIELELKHCENITKQ 786
>gi|508233 (U09358) Rca1p [Saccharomyces cerevisiae]
Length = 825
Score = 30.9 bits (68), Expect = 8.3
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 295 GEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEIL 116
G + E +N K N+ I E+ + I +++KY ++T+ + + KEQK D+ I
Sbjct: 48 GNKNEDNNEDAKLNK--EIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIR 105
Query: 115 KM---------NRIYTKRK 86
++ NRI +RK
Sbjct: 106 RLEDAVLKQESNRIQEERK 124
>gi|531754|emb|CAA56955| (X81068) probable mitochondrial protein [Saccharomyces cerevisiae]
Length = 825
Score = 30.9 bits (68), Expect = 8.3
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 295 GEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEIL 116
G + E +N K N+ I E+ + I +++KY ++T+ + + KEQK D+ I
Sbjct: 48 GNKNEDNNEDAKLNK--EIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIR 105
Query: 115 KM---------NRIYTKRK 86
++ NRI +RK
Sbjct: 106 RLEDAVLKQESNRIQEERK 124
>gi|1710045|sp|P40341|RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN COMPLEXES ASSEMBLY PROTEIN RCA1
(TAT-BINDING HOMOLOG 12) >gi|1078319|pir||S54465 YTA12
protein precursor, mitochondrial - yeast (Saccharomyces
cerevisiae) >gi|807972|emb|CAA89236| (Z49259) Rca1p
[Saccharomyces cerevisiae]
Length = 825
Score = 30.9 bits (68), Expect = 8.3
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 295 GEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEIL 116
G + E +N K N+ I E+ + I +++KY ++T+ + + KEQK D+ I
Sbjct: 48 GNKNEDNNEDAKLNK--EIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIR 105
Query: 115 KM---------NRIYTKRK 86
++ NRI +RK
Sbjct: 106 RLEDAVLKQESNRIQEERK 124
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83563309
Number of Sequences: 369800
Number of extensions: 1365430
Number of successful extensions: 7474
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 7433
Number of HSP's gapped (non-prelim): 112
length of query: 213
length of database: 113023754
effective HSP length: 53
effective length of query: 160
effective length of database: 93424354
effective search space: 14947896640
effective search space used: 14947896640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)