BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII-10R
         (602 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3293522 (AF069195) NADH dehydrogenase 1 [Praon dorsale]             33  2.0
gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P...    31  7.6
gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharo...    31  7.6


>gi|3293522 (AF069195) NADH dehydrogenase 1 [Praon dorsale]
           Length = 155
           
 Score = 32.8 bits (73), Expect = 2.0
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 188 LFIISFLTGCAYSSLRPLAPKARLNSY*LVSLQICINLIYLMLQSVKILRLVY 30
           L I  + + C+YS L  +   A+  SY  V+  IC+ +I +M+ S+ +  L+Y
Sbjct: 70  LMIAGWSSNCSYSMLGSMRSVAQSISY-EVTFSICMLIILMMINSINLSNLIY 121



>gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P3.18 (PFC0425w), Hypothetical
            protein, len: 4551 aa [Plasmodium falciparum]
            Length = 4550
            
 Score = 30.9 bits (68), Expect = 7.6
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 420  EYLLNKLNSNIFI*HLHLENQKLVDQENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIP 241
            EYLLNK N         + +  + +  N  L+K YN+ N    N++ IK   ++ HK +P
Sbjct: 3212 EYLLNKDND--------INDYNIKEYLNEILNK-YNKFNFYENNYDIIKYSTFVDHKIVP 3262

Query: 240  N----NIQQILKNYFF 205
            +    ++  + K +FF
Sbjct: 3263 SVSSFSVFDLYKLFFF 3278



>gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharomyces pombe]
            Length = 1935
            
 Score = 30.9 bits (68), Expect = 7.6
 Identities = 15/47 (31%), Positives = 25/47 (52%)

Query: 345  QENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIPNNIQQILKNYFF 205
            +++ C+++  N     P     I  +YYL H TI N +Q+I +N  F
Sbjct: 1603 EKSACIYRV-NEETYAPTTLGRIVSYYYLFHTTIRNFVQKITENAEF 1648


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92992929
Number of Sequences: 369800
Number of extensions: 1559125
Number of successful extensions: 3552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3549
Number of HSP's gapped (non-prelim): 6
length of query: 200
length of database: 113023754
effective HSP length: 53
effective length of query: 147
effective length of database: 93424354
effective search space: 13733380038
effective search space used: 13733380038
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)