BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12-20R
         (760 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3327234|dbj|BAA31685| (AB014610) KIAA0710 protein [Homo sapiens]    32  3.5
gi|2495516|sp|P77393|YAHL_ECOLI HYPOTHETICAL 31.8 KD PROTEIN IN ...    32  4.5
gi|4049768 (AF063866) ORF MSV252 tryptophan repeat gene family p...    32  4.5


>gi|3327234|dbj|BAA31685| (AB014610) KIAA0710 protein [Homo sapiens]
           Length = 1115
           
 Score = 32.5 bits (72), Expect = 3.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 326 NCLSKIIYFLHNLRVLKQNHIC 391
           NC+ +++YFL  +R L QNH+C
Sbjct: 529 NCMIQVLYFLEPVRCLIQNHLC 550



>gi|2495516|sp|P77393|YAHL_ECOLI HYPOTHETICAL 31.8 KD PROTEIN IN BETT-PRPR INTERGENIC REGION
           >gi|1657524 (U73857) hypothetical protein [Escherichia
           coli] >gi|1786519 (AE000139) orf, hypothetical protein
           [Escherichia coli]
           Length = 271
           
 Score = 32.1 bits (71), Expect = 4.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 717 VKMAPLHGRFLHLHLVFPFFNESLLYRLLS 628
           +K A  HG  LHL  ++P F ESL+  LLS
Sbjct: 201 IKQALAHGLLLHLKNIYPVFPESLVMLLLS 230



>gi|4049768 (AF063866) ORF MSV252 tryptophan repeat gene family protein
           [Melanoplus sanguinipes entomopoxvirus]
           Length = 161
           
 Score = 32.1 bits (71), Expect = 4.5
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 275 LNINITIKNRIDLENKINC--LSKIIYFLHNLRVLKQNHI--CPLYRKNMKMIRNESSYG 442
           +NIN+ I NR+     ++C  + K I   +N+  +  N+I    L  + +K  +NE ++ 
Sbjct: 72  ININMLIDNRLKFNKNLSCNIIDKYINIYNNIEYINWNNISMLKLTYEFIKKYKNELNWN 131

Query: 443 FILRY 457
            I +Y
Sbjct: 132 IICKY 136


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121438888
Number of Sequences: 369800
Number of extensions: 2094911
Number of successful extensions: 7086
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7084
Number of HSP's gapped (non-prelim): 4
length of query: 253
length of database: 113023754
effective HSP length: 54
effective length of query: 198
effective length of database: 93054554
effective search space: 18424801692
effective search space used: 18424801692
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)