BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII8R
(850 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|346685|pir||JC1349 developmentally-regulated GTP-binding prot... 44 4e-09
gi|4127988|emb|CAA06775| (AJ005940) GTP-binding protein [Homo sa... 44 4e-09
gi|416914|sp|P32233|DRG_MOUSE DEVELOPMENTALLY REGULATED GTP-BIND... 44 4e-09
gi|1169421|sp|P43690|DRG_XENLA DEVELOPMENTALLY REGULATED GTP-BIN... 46 7e-09
gi|416555|sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422... 41 4e-07
gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN P... 39 1e-06
gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana] >... 34 2e-04
gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family [Met... 32 0.001
gi|2345148|gb|AAB67829| (AF014821) developmentally regulated GTP... 36 0.002
gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis deve... 37 0.21
gi|1723727|sp|P53295|YG3Y_YEAST HYPOTHETICAL 41.0 KD PROTEIN IN ... 37 0.21
gi|2648391 (AE000956) GTP-binding protein [Archaeoglobus fulgidus] 34 1.8
>gi|346685|pir||JC1349 developmentally-regulated GTP-binding protein - mouse
Length = 367
Score = 43.8 bits (101), Expect = 4e-09
Identities = 19/30 (63%), Positives = 21/30 (69%)
Query: 611 RESXICLIQGSSVKHNPQKAGKDHELNDED 522
+E L+ G SVKHNPQK GKDH L DED
Sbjct: 331 KEFKYALVWGLSVKHNPQKVGKDHTLEDED 360
Score = 38.3 bits (87), Expect = 4e-09
Identities = 20/60 (33%), Positives = 30/60 (49%)
Query: 775 WNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
WN D LLE I + ++ + PKG P+V+ TV+ IHK +I++ KY
Sbjct: 276 WNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKY 335
>gi|4127988|emb|CAA06775| (AJ005940) GTP-binding protein [Homo sapiens] >gi|4218945
(AF078103) developmentally regulated GTP-binding protein
[Homo sapiens]
Length = 367
Score = 43.8 bits (101), Expect = 4e-09
Identities = 19/30 (63%), Positives = 21/30 (69%)
Query: 611 RESXICLIQGSSVKHNPQKAGKDHELNDED 522
+E L+ G SVKHNPQK GKDH L DED
Sbjct: 331 KEFKYALVWGLSVKHNPQKVGKDHTLEDED 360
Score = 38.3 bits (87), Expect = 4e-09
Identities = 20/60 (33%), Positives = 30/60 (49%)
Query: 775 WNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
WN D LLE I + ++ + PKG P+V+ TV+ IHK +I++ KY
Sbjct: 276 WNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKY 335
>gi|416914|sp|P32233|DRG_MOUSE DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG (NEDD3 PROTEIN)
>gi|220507|dbj|BAA01555| (D10715) GTP-binding protein
[Mus musculus]
Length = 367
Score = 43.8 bits (101), Expect = 4e-09
Identities = 19/30 (63%), Positives = 21/30 (69%)
Query: 611 RESXICLIQGSSVKHNPQKAGKDHELNDED 522
+E L+ G SVKHNPQK GKDH L DED
Sbjct: 331 KEFKYALVWGLSVKHNPQKVGKDHTLEDED 360
Score = 38.3 bits (87), Expect = 4e-09
Identities = 20/60 (33%), Positives = 30/60 (49%)
Query: 775 WNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
WN D LLE I + ++ + PKG P+V+ TV+ IHK +I++ KY
Sbjct: 276 WNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKY 335
>gi|1169421|sp|P43690|DRG_XENLA DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG (XDRG)
>gi|2120159|pir||I51426 GTP-binding protein DRG -
African clawed frog >gi|433422|dbj|BAA02978| (D13865)
GTP-binding protein DRG [Xenopus laevis]
Length = 367
Score = 45.7 bits (106), Expect = 7e-09
Identities = 20/30 (66%), Positives = 22/30 (72%)
Query: 611 RESXICLIQGSSVKHNPQKAGKDHELNDED 522
+E L+ GSSVKHNPQK GKDH L DED
Sbjct: 331 KEFKYALVWGSSVKHNPQKVGKDHVLEDED 360
Score = 35.6 bits (80), Expect = 7e-09
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 775 WNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
WN D LLE I + ++ + PKG P+V+ + IHK +I++ KY
Sbjct: 276 WNFDDLLEKIWDYLQLVRIYTKPKGQLPDYTSPVVLPCSHTAAEDFCTKIHKNLIKEFKY 335
>gi|416555|sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422452|pir||S33467 GTP-binding
protein 128up - fruit fly (Drosophila melanogaster)
>gi|630861|pir||S42582 GTP-binding protein - fruit fly
(Drosophila melanogaster) >gi|311343|emb|CAA50701|
(X71866) GTP-binding protein [Drosophila melanogaster]
Length = 368
Score = 41.0 bits (94), Expect = 4e-07
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 611 RESXICLIQGSSVKHNPQKAGKDHELNDED 522
+E L+ GSSVKH PQK G +H LNDED
Sbjct: 331 KEFKYALVWGSSVKHQPQKVGIEHVLNDED 360
Score = 34.4 bits (77), Expect = 4e-07
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 775 WNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
WN D LLE + + PKG P+V+ + +++ N +H+ I ++ KY
Sbjct: 276 WNFDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKY 335
>gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN PYK1-SNC1 INTERGENIC REGION
>gi|1077475|pir||S51983 FUN11 protein - yeast
(Saccharomyces cerevisiae) >gi|595548 (U12980) Fun11p
[Saccharomyces cerevisiae]
Length = 369
Score = 39.1 bits (89), Expect = 1e-06
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 778 EWNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIE 608
+WN+D+LL+ + + + + PKG +P+V++ D +VK N IHK +++
Sbjct: 277 DWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVD 333
Score = 34.4 bits (77), Expect = 1e-06
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 593 LIQGSSVKHNPQKAGKDHELNDED 522
L+ GSSVKH PQ G H L DED
Sbjct: 339 LVYGSSVKHQPQYVGLSHILEDED 362
>gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana]
>gi|2345150|gb|AAB67830| (AF014822) developmentally
regulated GTP binding protein [Arabidopsis thaliana]
Length = 399
Score = 34.4 bits (77), Expect = 2e-04
Identities = 18/65 (27%), Positives = 36/65 (54%), Gaps = 2/65 (3%)
Query: 790 TCS*EWNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXN--TVKXLYNIIHKG 617
+C+ + N+D+LL + + M + P+G +EP V+ D TV+ N +H+
Sbjct: 269 SCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQPDFDEPFVLSSDRGGCTVEDFCNHVHRT 328
Query: 616 IIEKVKY 596
+++ +KY
Sbjct: 329 LVKDMKY 335
Score = 31.7 bits (70), Expect = 2e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 611 RESXICLIQGSSVKHNPQKAGKDHELNDED 522
++ L+ G+S +HNPQ G L DED
Sbjct: 331 KDMKYALVWGTSTRHNPQNCGLSQHLEDED 360
>gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family [Methanobacterium
thermoautotrophicum]
Length = 380
Score = 32.1 bits (71), Expect = 0.001
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 590 IQGSSVKHNPQKAGKDHELNDED 522
+ GSSVK + QK G +H LNDED
Sbjct: 350 VWGSSVKFDGQKVGLEHVLNDED 372
Score = 31.7 bits (70), Expect = 0.001
Identities = 17/59 (28%), Positives = 32/59 (53%)
Query: 772 NIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
NID+L E I N + + P+G +EP++I R+ +TV + +H+ + K ++
Sbjct: 290 NIDELREEIFNRLGLIRIYLKPQGKKADYDEPLII-REGSTVGDVCQKLHRDFVRKFRH 347
>gi|2345148|gb|AAB67829| (AF014821) developmentally regulated GTP binding protein [Pisum
sativum]
Length = 399
Score = 36.0 bits (81), Expect = 0.002
Identities = 19/66 (28%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Query: 790 TCS*EWNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXN--TVKXLYNIIHKG 617
+C+ + N+D+LL + + M + P+G +P+V+ D +V+ N IH+
Sbjct: 269 SCNLKLNLDRLLSRMWDEMGLVRVYTKPQGQQPDFSDPVVLSADRGGCSVEDFCNHIHRS 328
Query: 616 IIEKVKYV 593
+++ VKYV
Sbjct: 329 LVKDVKYV 336
Score = 27.0 bits (58), Expect = 0.002
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 593 LIQGSSVKHNPQKAGKDHELNDED 522
L+ G +H PQ G H L DED
Sbjct: 337 LVWGIMARHYPQHCGLSHVLRDED 360
>gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis developing GTP-binding protein
DRG, SWISS-PROT Accession Number P43690
[Schizosaccharomyces pombe]
Length = 366
Score = 36.7 bits (83), Expect = 0.21
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 775 WNIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
WNID+L E++ + + + P+G EP++++ +TV+ N IH I + K+
Sbjct: 275 WNIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCNNIHSSIKSQFKH 334
>gi|1723727|sp|P53295|YG3Y_YEAST HYPOTHETICAL 41.0 KD PROTEIN IN YIP1-CBP4 INTERGENIC REGION
>gi|2120158|pir||S64487 hypothetical protein YGR173w -
yeast (Saccharomyces cerevisiae)
>gi|1323306|emb|CAA97199| (Z72958) ORF YGR173w
[Saccharomyces cerevisiae]
Length = 368
Score = 36.7 bits (83), Expect = 0.21
Identities = 14/24 (58%), Positives = 19/24 (78%)
Query: 593 LIQGSSVKHNPQKAGKDHELNDED 522
L+ GSS KH+PQK G +H ++DED
Sbjct: 338 LVWGSSAKHSPQKCGLNHRIDDED 361
>gi|2648391 (AE000956) GTP-binding protein [Archaeoglobus fulgidus]
Length = 355
Score = 33.6 bits (75), Expect = 1.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 772 NIDKLLESIRNMME*LEYTQNPKGGNKIDEEPIVIKRDXNTVKXLYNIIHKGIIEKVKY 596
N+D L E I +E + P GG EP++++R TV+ + +H+ +E +Y
Sbjct: 267 NLDLLKEQIYRKLEFIRVYLKPPGGKVDFSEPMILRRGA-TVEDICRKLHRDFVENFRY 324
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136036377
Number of Sequences: 369800
Number of extensions: 2363938
Number of successful extensions: 4836
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4816
Number of HSP's gapped (non-prelim): 21
length of query: 283
length of database: 113023754
effective HSP length: 54
effective length of query: 228
effective length of database: 93054554
effective search space: 21216438312
effective search space used: 21216438312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)