BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII6F
         (544 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|414322 (L11172) [Plasmodium falciparum RNA polymerase I gene,...    34  0.59
gi|4049799 (AF063866) ORF MSV201 hypothetical protein [Melanoplu...    31  8.7


>gi|414322 (L11172) [Plasmodium falciparum RNA polymerase I gene, complete
            cds.], gene product [Plasmodium falciparum]
            Length = 2910
            
 Score = 34.4 bits (77), Expect = 0.59
 Identities = 25/78 (32%), Positives = 39/78 (49%), Gaps = 9/78 (11%)

Query: 160  EDVFXKKGHSINDLNLFXIIRGNLAELYNLLFRSESCSTAERLNLLVNMKEILNKTL--- 330
            + VF K  + I+  N F + R +   L + LF+   C  +   N L+NM  ++NK L   
Sbjct: 1751 DHVFYKMEYLIH--NYFYLKRSDFDNLIDSLFQPYLCRVSSGTNNLINMNNLMNKFLNNG 1808

Query: 331  ------TSAKSMKXIMSVLHDLLQHTY 393
                  T AK  K   S++  +L   Y
Sbjct: 1809 FSNMIFTGAKGSKVNYSMICGMLDQQY 1835



>gi|4049799 (AF063866) ORF MSV201 hypothetical protein [Melanoplus sanguinipes
           entomopoxvirus]
           Length = 177
           
 Score = 30.5 bits (67), Expect = 8.7
 Identities = 22/100 (22%), Positives = 45/100 (45%)

Query: 226 NLAELYNLLFRSESCSTAERLNLLVNMKEILNKTLTSAKSMKXIMSVLHDLLQHTYYNRD 405
           NL    N++  +  C    +LNLL++ +++LN  + +            D + H YYN +
Sbjct: 12  NLMMFNNMIISNRICIAKYKLNLLLDKEKLLNYDMINK----------IDNIFHEYYNFE 61

Query: 406 YRWSKYINGILIYFNSAIPYSYMENIXLLPEAIDNILPLI 525
           +             ++ IP + M+ + ++ +   NIL +I
Sbjct: 62  H-------------SNGIPINIMKLVEIIMDQESNILNII 88


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85024924
Number of Sequences: 369800
Number of extensions: 1398425
Number of successful extensions: 3042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3041
Number of HSP's gapped (non-prelim): 2
length of query: 181
length of database: 113023754
effective HSP length: 52
effective length of query: 128
effective length of database: 93794154
effective search space: 12005651712
effective search space used: 12005651712
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)