BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII28F
         (607 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|586315|sp|P38299|YB34_YEAST HYPOTHETICAL 60.6 KD PROTEIN IN S...    34  0.68
gi|2493012|sp|Q12697|ATC9_YEAST PROBABLE CALCIUM-TRANSPORTING AT...    31  5.9


>gi|586315|sp|P38299|YB34_YEAST HYPOTHETICAL 60.6 KD PROTEIN IN SMP1-MBA1 INTERGENIC REGION
           >gi|626538|pir||S46056 hypothetical protein YBR184w -
           yeast (Saccharomyces cerevisiae)
           >gi|536542|emb|CAA85145| (Z36053) ORF YBR184w
           [Saccharomyces cerevisiae] >gi|575911 (U02073) unknown
           [Saccharomyces cerevisiae]
           Length = 523
           
 Score = 34.4 bits (77), Expect = 0.68
 Identities = 32/120 (26%), Positives = 57/120 (46%), Gaps = 6/120 (5%)

Query: 410 RLPYPFGVDRILKSRVSTXQLSDMDVIKTDGEILKELSNGIIIKPIXNTL---SCCVS-- 246
           RLPY   + R+     S  Q+   D+I T     +  ++G+        L   S C++  
Sbjct: 246 RLPYCKQILRLF----SLLQMKRNDLIVTS----ENCNSGVFFSNFNYQLQVKSNCIANI 297

Query: 245 TNTYSFKPSNDIEIHKKIISHPNWCINHIECNNTYTFDIFTMLGIKISILPNEFMNY-FI 69
           ++T SF P ++I ++   I +PN   N  EC   Y   +      + ++L + +  +  I
Sbjct: 298 SSTLSFLPHHEITVYTSFILYPNVVDNIWECTR-YAIQLLKSEAAQFTLLRDIYSGFTII 356

Query: 68  LNNHSY 51
           L+NH Y
Sbjct: 357 LSNHRY 362



>gi|2493012|sp|Q12697|ATC9_YEAST PROBABLE CALCIUM-TRANSPORTING ATPASE 9 >gi|2132937|pir||S67195
            probable membrane protein YOR291w - yeast (Saccharomyces
            cerevisiae) >gi|1420646|emb|CAA99518| (Z75199) ORF
            YOR291w [Saccharomyces cerevisiae]
            Length = 1472
            
 Score = 31.3 bits (69), Expect = 5.9
 Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 2/46 (4%)

Query: 158  ECNNTYTF--DIFTMLGIKISILPNEFMNYFILNNHSYLEIEIDDKTE 21
            ECN T     D+F +L    + +P E++N  +LN+  Y  +  D+K E
Sbjct: 1123 ECNYTLAVSGDVFRLLFRDENEIPEEYLNEILLNSSIYARMSPDEKHE 1170


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97412700
Number of Sequences: 369800
Number of extensions: 1826604
Number of successful extensions: 4184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4184
Number of HSP's gapped (non-prelim): 2
length of query: 202
length of database: 113023754
effective HSP length: 53
effective length of query: 148
effective length of database: 93424354
effective search space: 13826804392
effective search space used: 13826804392
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)