BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII27F
         (731 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2983376 (AE000709) flagellar protein FlgA [Aquifex aeolicus]        37  0.17
gi|1707895|sp|P52306|GDS1_HUMAN RAP1 GTPASE-GDP DISSOCIATION STI...    31  9.8


>gi|2983376 (AE000709) flagellar protein FlgA [Aquifex aeolicus]
           Length = 223
           
 Score = 36.7 bits (83), Expect = 0.17
 Identities = 26/86 (30%), Positives = 44/86 (50%), Gaps = 5/86 (5%)

Query: 327 YDYMFLFLILTFQLKMDSIVEAEIREIIKDKSSFYNYKGPILKEFEDNTSDFCIFDYKCL 148
           Y   FLF + TF L ++S+++ E+R+   ++    NYK  +L    DN S         +
Sbjct: 21  YAVNFLFFLFTFSLDLESLIKNELRKEFGEEVRLKNYK--VLTGIPDNFSK--------V 70

Query: 147 EIKLXKN-----IEILPTLVGDCVKIIGFKC 70
           E+K+ KN     + +  T VG     + +KC
Sbjct: 71  ELKVYKNSPRGFLHLKNTKVGTIALELEWKC 101



>gi|1707895|sp|P52306|GDS1_HUMAN RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 (SMG P21 STIMULATORY
           GDP/GTP EXCHANGE PROTEIN) (SMG GDS PROTEIN)
           >gi|2136175|pir||I37456 smg GDS - human
           >gi|32080|emb|CAA45067| (X63465) smg GDS [Homo sapiens]
           Length = 558
           
 Score = 30.9 bits (68), Expect = 9.8
 Identities = 19/52 (36%), Positives = 33/52 (62%), Gaps = 1/52 (1%)

Query: 165 FDYKCLEIKLXKNIEILPTLVGDCVKIIGFKCNNNSLSKLC-INFKNLYCLKS 10
           +D   L+ +L  N+ ++PTLV    K++G  C N +L+++C + F NL  L+S
Sbjct: 118 YDSHSLQAQLI-NMGVIPTLV----KLLGIHCQNAALTEMCLVAFGNLAELES 165


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104322517
Number of Sequences: 368476
Number of extensions: 1699003
Number of successful extensions: 3460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3459
Number of HSP's gapped (non-prelim): 2
length of query: 243
length of database: 112640273
effective HSP length: 53
effective length of query: 190
effective length of database: 93111045
effective search space: 17691098550
effective search space used: 17691098550
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)