BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII25F
(756 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4102010 (AF007429) putative transposase [Haemophilus paragall... 45 8e-04
gi|97162|pir||S16288 hypothetical protein - Haemophilus influenzae 43 0.003
gi|1333760|emb|CAA41166| (X58176) ORF2 [Haemophilus influenzae] 41 0.007
gi|97161|pir||S24059 gene IS1016-V6 protein (insertion sequence ... 40 0.020
gi|3212219 (U32812) H. influenzae predicted coding region HI1328... 39 0.027
gi|2829877 (AC002396) Hypothetical protein [Arabidopsis thaliana] 34 0.90
gi|4337200|gb|AAD18114| (AC006403) putative NAM protein [Arabido... 33 2.0
gi|1915984 (U65919) Tritrichomonas foetus serine/threonine prote... 32 4.5
gi|4115490|dbj|BAA36389| (AB010306) S3-RNase [Prunus avium] 31 7.8
>gi|4102010 (AF007429) putative transposase [Haemophilus paragallinarum]
Length = 216
Score = 44.5 bits (103), Expect = 8e-04
Identities = 36/145 (24%), Positives = 61/145 (41%), Gaps = 4/145 (2%)
Query: 311 TVADSAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDETPMTTRHGNTG 490
T +AE + +KTT ++ R L Y E G+ I DE+
Sbjct: 23 TARTAAELVNVNKTTAAYYFHRLR-QLIYQNSLHLEMFEGE---IEADESYFGGARKGKR 78
Query: 491 ATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLS 670
++ + V G + + K + +P+ L + E + P S+++TD++RSY L
Sbjct: 79 GRGAAGKIAVFGLLK-RNGKVYTVAVPNTQSATLLPIIREQVKPDSIVYTDNYRSYDVLD 137
Query: 671 SLGYTHFTVNHSRELVSR----TGIHTNW 745
++HF +NHS GI W
Sbjct: 138 VSEFSHFRINHSTHFAENHNHINGIENFW 166
>gi|97162|pir||S16288 hypothetical protein - Haemophilus influenzae
Length = 217
Score = 42.6 bits (98), Expect = 0.003
Identities = 38/156 (24%), Positives = 68/156 (43%)
Query: 281 EILYQFSCRRTVADSAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDET 460
++L F T +A+ LG + + Y+ R +++Y L ++++ D I +E+
Sbjct: 15 KLLEFFVLEVTARAAADLLGIQANSAIFLYRKIREAISYHLALEADEVVDDQI--ELNES 72
Query: 461 PMTTRHGNTGATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHT 640
H ++ V V G + K F + + L + I P S ++T
Sbjct: 73 YFGGHHKGKRGRGAAGKVAVFGLLK-RQGKIFTVVVENTKTGTLMPVIVRKIKPDSWVYT 131
Query: 641 DSHRSYLTLSSLGYTHFTVNHSRELVSRTGIHTNWI 748
D++RSY L + + H +NHS EL + H N I
Sbjct: 132 DTYRSYDALDASKFHHERINHS-ELFAVKQNHINGI 166
>gi|1333760|emb|CAA41166| (X58176) ORF2 [Haemophilus influenzae]
Length = 164
Score = 41.4 bits (95), Expect = 0.007
Identities = 38/142 (26%), Positives = 64/142 (44%)
Query: 323 SAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDETPMTTRHGNTGATRS 502
+A+ LG + + FY+ R ++Y L ++++ DG I DE+ + +
Sbjct: 2 AADLLGIQANSAILFYRKIREVISYHLALEADEVV-DGQI-ELDESYFGSHRKGKRGRGT 59
Query: 503 SNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLSSLGY 682
+ V V G + K F + + E L + I P S ++TD++RSY L +
Sbjct: 60 AGKVAVFGLLK-RQGKVFTVVVENTRTETLMPVIVRKIKPDSRVYTDTYRSYDALDVSKF 118
Query: 683 THFTVNHSRELVSRTGIHTNWI 748
H +NHS EL + H N I
Sbjct: 119 HHERINHS-ELFAVKQNHINGI 139
>gi|97161|pir||S24059 gene IS1016-V6 protein (insertion sequence IS1016) - Haemophilus
influenzae >gi|43593|emb|CAA42428| (X59756) IS1016-V6
[Haemophilus influenzae]
Length = 191
Score = 39.9 bits (91), Expect = 0.020
Identities = 40/156 (25%), Positives = 68/156 (42%)
Query: 281 EILYQFSCRRTVADSAETLGHSKTTIMSFYKLFRASLTYFLEKTSEKLGGDGIIIHFDET 460
++L F T +A+ LG + + FY+ R ++Y L ++++ DG I DE+
Sbjct: 15 KLLEFFVLEVTARAAADLLGIQANSAILFYRKIREVISYHLALEADEVF-DGQI-ELDES 72
Query: 461 PMTTRHGNTGATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHT 640
++ V V G + K F + + E L + I P S ++T
Sbjct: 73 YFGGHRKGKRGLGAAGKVAVFGLLK-RQGKVFTVVVENTKTETLMPVIVRKIKPHSWVYT 131
Query: 641 DSHRSYLTLSSLGYTHFTVNHSRELVSRTGIHTNWI 748
+++RSY L + H +NHS EL + H N I
Sbjct: 132 NTYRSYDALDVSKFHHERINHS-ELFAVKQNHINGI 166
>gi|3212219 (U32812) H. influenzae predicted coding region HI1328.1
[Haemophilus influenzae Rd]
Length = 123
Score = 39.5 bits (90), Expect = 0.027
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 548 KCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLSSLGYTHFTVNHS 706
K + +P+ L + E + P S+++TD+ RSY L ++HF +NHS
Sbjct: 4 KVYTVVVPNVQSATLLPIIREKVKPDSIVYTDTFRSYDVLDVSEFSHFRINHS 56
>gi|2829877 (AC002396) Hypothetical protein [Arabidopsis thaliana]
Length = 252
Score = 34.4 bits (77), Expect = 0.90
Identities = 22/74 (29%), Positives = 35/74 (46%), Gaps = 4/74 (5%)
Query: 215 TNYNILXDTIFNGTKLQYGEVLEILYQFSCRRT----VADSAETLGHSKTTIMSFYKLFR 382
T+Y I F+ +YGE+L++L F RR V E L ++ + +F
Sbjct: 122 TSYLIAVKEAFHDEPAKYGEMLKLLKDFKARRVDAACVIARVEELMKDHLNLLFGFCVFL 181
Query: 383 ASLTYFLEKTSEKLGGDG 436
++ T F K + GDG
Sbjct: 182 SATTSFTTKLKARFQGDG 199
>gi|4337200|gb|AAD18114| (AC006403) putative NAM protein [Arabidopsis thaliana]
Length = 316
Score = 33.2 bits (74), Expect = 2.0
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 491 ATRSSNTVWVVGAVDIHSRKCFLSFLPSRSREDLFRFLEEWILPGSVIHTDSHRSYLTLS 670
A R T WV+ +HS+ + + S++D EW++ T++ + Y++ S
Sbjct: 128 APRGEKTCWVMHEYRLHSKSSYRT-----SKQD------EWVVCRVFKKTEATKKYISTS 176
Query: 671 SLGYTHFTVNHSRELVSRT 727
S +H NH+R + T
Sbjct: 177 SSSTSHHHNNHTRASILST 195
>gi|1915984 (U65919) Tritrichomonas foetus serine/threonine protein kinase
[Tritrichomonas foetus]
Length = 468
Score = 32.1 bits (71), Expect = 4.5
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 7/75 (9%)
Query: 499 IFKHC-LGCWCG------RYPQ*EMFLIIFTIEIKRRSI*IFRRVDFTRICNTHRFPQIV 657
I KH GC+C R + E F+ I R + IF +VD ICN +R
Sbjct: 43 IAKHTPTGCFCAAKIVDLRNTKTEEFVGIM------REVSIFMQVDHPNICNLYRLSTAN 96
Query: 658 FNIIFFGIYAFHG*PFERVSIK 723
+IFF YA G E V+ K
Sbjct: 97 NQLIFFMEYASRGTLLEYVNAK 118
>gi|4115490|dbj|BAA36389| (AB010306) S3-RNase [Prunus avium]
Length = 229
Score = 31.3 bits (69), Expect = 7.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 41 FEDLKNMTNK-EIVNPLQSTGIFPQRYRCGGCNRILTAVHWQNNRSPRFRCKXGDCQNKT 217
FE M N I + L++ I P + + I++A+ + R+P RCK
Sbjct: 133 FEISHEMWNSFNITDILKNASIVPHPTQTWKYSDIVSAIQSKTQRTPLLRCKTDPAHPNA 192
Query: 218 NYNILXDTIFNGTKLQYGEVLEILYQFSCRRT 313
N +L + +F YG + Q C RT
Sbjct: 193 NTQLLHEVVF-----CYG--YNAIKQIDCNRT 217
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147097559
Number of Sequences: 369800
Number of extensions: 2932213
Number of successful extensions: 6472
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6467
Number of HSP's gapped (non-prelim): 11
length of query: 252
length of database: 113023754
effective HSP length: 54
effective length of query: 197
effective length of database: 93054554
effective search space: 18331747138
effective search space used: 18331747138
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)