BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII20F
(631 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|83996|pir||B26696 hypothetical protein 1 (CYb-COII intergenic... 31 0.24
gi|231588|sp|Q00275|ATP6_APIME ATP SYNTHASE A CHAIN (PROTEIN 6) ... 34 0.93
gi|66974|pir||RNZQBF DNA-directed RNA polymerase (EC 2.7.7.6) be... 34 0.93
gi|1710670|sp|P21421|RPOB_PLAFA DNA-DIRECTED RNA POLYMERASE BETA... 34 0.93
gi|4493895|emb|CAB39004| (AL034558) predicted using hexExon; MAL... 32 2.7
gi|2209215 (AF004325) putative oligosaccharide repeat unit trans... 32 4.7
gi|4406262|gb|AAD19923| (AF105116) putative oligosaccharide repe... 32 4.7
gi|2258370 (AF007261) haem lyase [Reclinomonas americana] 31 8.1
>gi|83996|pir||B26696 hypothetical protein 1 (CYb-COII intergenic region) -
Sauroleishmania tarentolae mitochondrion (SGC6)
(fragment) >gi|896286 (M10126) NH2 terminus uncertain
[Leishmania tarentolae]
Length = 443
Score = 30.9 bits (68), Expect = 0.24
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 25 ILYIFFKSYLLKHFSVKNISYLFCFLN------F*IENISYIILYXSNKITIITVILIPL 186
I +IF +L F +LFCFLN F I + YII++ + +I ++ I +
Sbjct: 53 ICFIFLLLFLFCFF------FLFCFLNFDTRFVFMIIIMQYIIIFMF--LHVIHILFISI 104
Query: 187 RYDIFPILSF*IVL 228
+++F +L F I++
Sbjct: 105 LFELFSLLLFLILI 118
Score = 23.9 bits (50), Expect = 0.24
Identities = 22/71 (30%), Positives = 38/71 (52%), Gaps = 15/71 (21%)
Query: 341 LFLLIFNYQFYYIFYCHQLIN---------FYISTTL-QFYHSFQFI-VKNIYNNLKKII 487
L+ +I NY FY +C + + FYI L + Y + + ++ +Y L I
Sbjct: 147 LYYMILNYCFYLCDFCFLIFDEEWLGILCLFYILLILFKLYIAILILFLEQLYIRLGVFI 206
Query: 488 ----PTIMILFKLIKLNIYILFNYYF 553
T +LF I + + I F Y++
Sbjct: 207 FIYMLTFYVLFCFILIILLICFIYFY 232
>gi|231588|sp|Q00275|ATP6_APIME ATP SYNTHASE A CHAIN (PROTEIN 6) >gi|627192|pir||A42622
H+-transporting ATP synthase (EC 3.6.1.34) chain 6 -
honeybee mitochondrion (SGC4) >gi|552442 (L06178) ATPase
subunit 6 [Apis mellifera ligustica] >gi|552451 (M87065)
adenosine triphosphatase 6 [Apis mellifera ligustica]
Length = 226
Score = 34.0 bits (76), Expect = 0.93
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 338 YLFLLIFNYQFYYIFYCHQL-INFYISTTLQF-YHSFQFIVKNIYNNLKKIIPTIMILFK 511
+LF+++ F IF+ Q I F + T + F Y+ F+ + K+ Y + II I ++
Sbjct: 25 WLFMMLPIIIFPSIFWLIQSRIMFIMKTLMNFMYNEFKVVSKSKYQS--NIIIFISLMLY 82
Query: 512 LIKLNIYILFNYYFTYNRNIE*YRITSITY*FSKL 616
++ NI+ L Y FT ++ I S+T FS L
Sbjct: 83 IMITNIFSLIPYVFTLTSHLLLNMILSLTLWFSFL 117
>gi|66974|pir||RNZQBF DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Plasmodium
falciparum (fragment) >gi|9880|emb|CAA36427| (X52177)
RNA polymerase beta subunit (697 AA) [Plasmodium
falciparum]
Length = 697
Score = 34.0 bits (76), Expect = 0.93
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 3/78 (3%)
Query: 338 YLFLLIFNYQFYYIFYCHQLINFYISTTLQFYHSFQFIVKNIYNNLKKIIPTIMILFKLI 517
YLF++ + + FY + L+N + + ++ KNI N I+ FK+
Sbjct: 70 YLFVIYYKHIFYNRYNFKLLLNIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKIC 129
Query: 518 KLN---IYILFNYYFTYNRNI 571
+ IYI FNY ++ N+
Sbjct: 130 NITQNIIYIPFNYLLSFIENL 150
>gi|1710670|sp|P21421|RPOB_PLAFA DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|587604|emb|CAA53232|
(X75544) beta subunit RNA polymerase [Plasmodium
falciparum] >gi|1171587|emb|CAA64572| (X95275) rpoB
[Plasmodium falciparum]
Length = 1024
Score = 34.0 bits (76), Expect = 0.93
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 3/78 (3%)
Query: 338 YLFLLIFNYQFYYIFYCHQLINFYISTTLQFYHSFQFIVKNIYNNLKKIIPTIMILFKLI 517
YLF++ + + FY + L+N + + ++ KNI N I+ FK+
Sbjct: 397 YLFVIYYKHIFYNRYNFKLLLNIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKIC 456
Query: 518 KLN---IYILFNYYFTYNRNI 571
+ IYI FNY ++ N+
Sbjct: 457 NITQNIIYIPFNYLLSFIENL 477
>gi|4493895|emb|CAB39004| (AL034558) predicted using hexExon; MAL3P2.17 (PFC0240c),
Hypothetical protein, len: 830 aa [Plasmodium
falciparum]
Length = 829
Score = 32.5 bits (72), Expect = 2.7
Identities = 15/47 (31%), Positives = 28/47 (58%), Gaps = 2/47 (4%)
Query: 347 LLIFNY--QFYYIFYCHQLINFYISTTLQFYHSFQFIVKNIYNNLKKII 487
LLI+ + F Y Y +++ +Y++ T +F SF ++ NI N+ +I
Sbjct: 483 LLIWGFFIPFLYFLYKNEIKKYYVNRTYEFLFSFFLLLDNIQINISNLI 531
>gi|2209215 (AF004325) putative oligosaccharide repeat unit transporter
[Streptococcus pneumoniae]
Length = 481
Score = 31.7 bits (70), Expect = 4.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 341 LFLLIFNYQFYYIFYCHQLINFYISTTLQFYHSFQFIVKNIYNNLK---KIIPTIMILFK 511
+FLL+ + Y +F L + S L +HS FI +Y NL+ P +
Sbjct: 160 IFLLVKRPEDYIVFASISLFSSLSSNILNLWHSRHFINIKLYKNLQFKYHFKPMWYLFAS 219
Query: 512 LIKLNIY 532
L+ +NIY
Sbjct: 220 LLAVNIY 226
>gi|4406262|gb|AAD19923| (AF105116) putative oligosaccharide repeat unit transporter
[Streptococcus pneumoniae]
Length = 481
Score = 31.7 bits (70), Expect = 4.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 341 LFLLIFNYQFYYIFYCHQLINFYISTTLQFYHSFQFIVKNIYNNLK---KIIPTIMILFK 511
+FLL+ + Y +F L + S L +HS FI +Y NL+ P +
Sbjct: 160 IFLLVKRPEDYIVFASISLFSSLSSNILNLWHSRHFINIKLYKNLQFKYHFKPMWYLFAS 219
Query: 512 LIKLNIY 532
L+ +NIY
Sbjct: 220 LLAVNIY 226
>gi|2258370 (AF007261) haem lyase [Reclinomonas americana]
Length = 637
Score = 30.9 bits (68), Expect = 8.1
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 338 YLFLLIFNYQFYYIFYCHQLINFYISTTLQFYHSFQFIVKNIYNNLKKIIP----TIMIL 505
+ FL NYQ +YI Y I F + + L+ ++SF FI K YN+ +I TI IL
Sbjct: 439 FSFLFFENYQRFYILYL--FIPFLVWSILKHFYSF-FIFKK-YNSFSMLISHFGVTIFIL 494
Query: 506 FKLI 517
L+
Sbjct: 495 SVLL 498
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85672060
Number of Sequences: 369800
Number of extensions: 1399376
Number of successful extensions: 3833
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3815
Number of HSP's gapped (non-prelim): 36
length of query: 210
length of database: 113023754
effective HSP length: 53
effective length of query: 156
effective length of database: 93424354
effective search space: 14574199224
effective search space used: 14574199224
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)