BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII14R
         (765 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2394423 (AF024492) No definition line found [Caenorhabditis e...    35  0.53
gi|2394424 (AF024492) No definition line found [Caenorhabditis e...    35  0.69
gi|1401206 (U58510) pre-mRNA splicing factor PRP 6 homolog [Chlo...    34  1.2
gi|3900917|emb|CAA07301| (AJ006877) RepA2 protein [Buchnera aphi...    33  2.7


>gi|2394423 (AF024492) No definition line found [Caenorhabditis elegans]
           Length = 848
           
 Score = 35.2 bits (79), Expect = 0.53
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 136 IKDRFNFQKRYIKETIMIKTNVIDRLELISLMRNSQVFFDYLV--------DLGILKNFE 291
           ++D F  + R  +  I ++    D LEL+S      +   Y+         DLG + NFE
Sbjct: 508 VRDEFYRELRARRFPIDLQIKCADELELLSSFIPLPIVNLYIRLASESIYRDLGKIGNFE 567

Query: 292 KCSKCKKVLXLMINEDIYKWLWKCPNSRC 378
           KC KCK V  ++ +E + K   K  N  C
Sbjct: 568 KCPKCKSV--VLFDEIVEKNEKKTQNRSC 594



>gi|2394424 (AF024492) No definition line found [Caenorhabditis elegans]
           Length = 918
           
 Score = 34.8 bits (78), Expect = 0.69
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 136 IKDRFNFQKRYIKETIMIKTNVIDRLELISLMRNSQVFFDYL--------VDLGILKNFE 291
           +KD F  + R  +  I ++   +D LEL+S      +   Y+         DLG L +FE
Sbjct: 575 LKDEFYREFRARRLPIDLQIKAVDELELLSTFIPLPIVNLYIRMVSETTYQDLGALGSFE 634

Query: 292 KCSKCKKVL 318
           KC KCK  +
Sbjct: 635 KCPKCKSAV 643



>gi|1401206 (U58510) pre-mRNA splicing factor PRP 6 homolog [Chlorarachnion
           CCMP621]
           Length = 686
           
 Score = 34.0 bits (76), Expect = 1.2
 Identities = 29/77 (37%), Positives = 39/77 (49%), Gaps = 1/77 (1%)

Query: 211 LELISLMRNSQVF-FDYLVDLGILKNFEKCSKCKKVLXLMINEDIYKWLWKCPNSRCTNT 387
           L + SL R  Q   F +L  L I KN  K +KC      M++  I K L KCP+S     
Sbjct: 511 LIIASLKRRYQSLEFLWLYYLAIFKN--KFNKC-----FMLSHLITKALKKCPSSTLLWM 563

Query: 388 HFLLEKKSFFYGLKTFLS 441
            FL  +K+FF  +  FL+
Sbjct: 564 EFLSHRKNFFEKVTLFLA 581



>gi|3900917|emb|CAA07301| (AJ006877) RepA2 protein [Buchnera aphidicola]
           Length = 251
           
 Score = 32.8 bits (73), Expect = 2.7
 Identities = 22/83 (26%), Positives = 45/83 (53%), Gaps = 7/83 (8%)

Query: 220 ISLMRNSQVFFDYLVDLGILKNFEKCSKCKKVLXLMINEDIYKWLWKCPN-------SRC 378
           IS+ R S++  +++  +G++K       CKK+  ++IN +I+K ++  P        S+ 
Sbjct: 113 ISITRASRLISEFMEPMGLIK-------CKKIKNVLINNNIHKKIFLTPMFFMLLNISQS 165

Query: 379 TNTHFLLEKKSFFYGLKTFLSKIFLIIYDI 468
           T  + + +K   F        KIF+ + +I
Sbjct: 166 TINYHIYKKIRLFKNSNMKEKKIFISLEEI 195


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115472037
Number of Sequences: 368476
Number of extensions: 1985057
Number of successful extensions: 4725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4714
Number of HSP's gapped (non-prelim): 15
length of query: 255
length of database: 112640273
effective HSP length: 54
effective length of query: 200
effective length of database: 92742569
effective search space: 18548513800
effective search space used: 18548513800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)