BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII-9R
(648 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|729683|sp|P40336|HB58_MOUSE H58 PROTEIN >gi|345669|pir|... 34 1.3
gi|3342000 (AF054179) H beta 58 homolog [Homo sapiens] 34 1.3
gi|4049878 (AF063866) ORF MSV035 hypothetical protein [Melanoplu... 33 1.7
gi|418185|sp|P32227|VC05_SPVKA HYPOTHETICAL PROTEIN C5 >gi|34748... 32 3.7
gi|2688735 (AE001178) B. burgdorferi predicted coding region BB0... 32 4.9
gi|2429426 (AF025457) No definition line found [Caenorhabditis e... 31 6.4
gi|2128918|pir||D64490 hypothetical protein MJ1525 - Methanococc... 31 6.4
>gi|729683|sp|P40336|HB58_MOUSE H58 PROTEIN >gi|345669|pir||B44882 H beta 58 homolog -
chicken >gi|346725|pir||A44882 essential for
embryogenesis protein H beta 58 - mouse
>gi|252484|bbs|109890 H beta 58 homolog [chickens,
Peptide, 327 aa] >gi|252483|bbs|109840 (S41204) H beta
58=essential for embryogenesis [mice, embryo, Peptide
Mutant, 327 aa] [Mus sp.]
Length = 327
Score = 33.6 bits (75), Expect = 1.3
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Query: 540 QYDTIKIYLTAVFKFIKDKNNPHQIENICTSISQETLF----CYDAQYEILQHIYISLKT 373
++ I+I + DK+N H+ N+ ++ YD ++ ++ Y S
Sbjct: 64 EHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESY-I 122
Query: 372 GSGFDITYFIKEMIYK------IKYDILLHIIASNTDAQNVHSLGYWRNELSEEIGFIKN 211
G+ + YF+K I + +YD+++H +A+ D N + + I F N
Sbjct: 123 GANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCL-HIEFEYN 181
Query: 210 ESKYSHVRTGTLIDNKPYILYQFFILFKAEKVATEILEK 94
+SKY H++ +I K Y L + K + + ++++K
Sbjct: 182 KSKY-HLK--DVIVGKIYFL---LVRIKIQHMELQLIKK 214
>gi|3342000 (AF054179) H beta 58 homolog [Homo sapiens]
Length = 327
Score = 33.6 bits (75), Expect = 1.3
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Query: 540 QYDTIKIYLTAVFKFIKDKNNPHQIENICTSISQETLF----CYDAQYEILQHIYISLKT 373
++ I+I + DK+N H+ N+ ++ YD ++ ++ Y S
Sbjct: 64 EHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESY-I 122
Query: 372 GSGFDITYFIKEMIYK------IKYDILLHIIASNTDAQNVHSLGYWRNELSEEIGFIKN 211
G+ + YF+K I + +YD+++H +A+ D N + + I F N
Sbjct: 123 GANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCL-HIEFEYN 181
Query: 210 ESKYSHVRTGTLIDNKPYILYQFFILFKAEKVATEILEK 94
+SKY H++ +I K Y L + K + + ++++K
Sbjct: 182 KSKY-HLK--DVIVGKIYFL---LVRIKIQHMELQLIKK 214
>gi|4049878 (AF063866) ORF MSV035 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 439
Score = 33.2 bits (74), Expect = 1.7
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Query: 600 DALYKSNNITTSY--ITRFTSKQYDTIKIYLTAVFKFIKDKNNPHQIENICTSISQETLF 427
D + NN+T SY I K + KI L + +F+ P+ I N+ + + L
Sbjct: 57 DLIELLNNLTLSYSNINNLLYKYKNHEKIILFIITRFLI----PNSIINLHSDVICYILS 112
Query: 426 CYDAQYEILQHIYISLK--------TGSGFDITYFIKEMIYKIKY-DILLHIIASNTDAQ 274
CY+ + I ++IY K T S I +++ +K D +++I +N +
Sbjct: 113 CYNIKSTIYKNIYKKYKNTLLCNKLTNSVIQHNININKILPFVKLNDEQINLILNNNIYK 172
Query: 273 NVHSLGYWRNELSEEIGFIKNESKYSHVRTGTLIDNKPYILYQFFILFKAEKVATEILEK 94
+V N++S + I N++KY ++ L+ NK Y F K+ +L
Sbjct: 173 HVLIKMLLYNDISSD---IINKNKY-NILNALLLINKVY--------FSHHKIKKILLNI 220
Query: 93 INNN 82
I+N+
Sbjct: 221 ISND 224
>gi|418185|sp|P32227|VC05_SPVKA HYPOTHETICAL PROTEIN C5 >gi|347481 (L22013) ORF C5L [Swinepox
virus]
Length = 236
Score = 32.1 bits (71), Expect = 3.7
Identities = 33/117 (28%), Positives = 55/117 (46%), Gaps = 12/117 (10%)
Query: 591 YKSNNITTSYITRFTSKQYDTIKIYLTAVFK----FIKDKNNPHQIENICTSISQETLFC 424
Y+S I YI + +Y + AVF+ F +D NP + E + I +E FC
Sbjct: 14 YRSGRIIRKYIRKLNKDEYK----HFCAVFRLNVDFSQDDKNPSRKE-VIRIIDEEFNFC 68
Query: 423 -----YDAQYEILQHIYISLKTGSGFDITYFIKEMIY---KIKYDILLHIIASNTDAQNV 268
YD + H+ ++ S ++ Y +K+ Y KI Y IL I ++ +
Sbjct: 69 DLRLFYDIMTVVPNHMNVASIIYSEYE--YLLKKSNYKNKKINYTILDKINKYHSIDDII 126
Query: 267 HSLGYWRNE 241
+WR +
Sbjct: 127 FMYLHWRKK 135
>gi|2688735 (AE001178) B. burgdorferi predicted coding region BB0796 [Borrelia
burgdorferi]
Length = 185
Score = 31.7 bits (70), Expect = 4.9
Identities = 43/161 (26%), Positives = 70/161 (42%), Gaps = 11/161 (6%)
Query: 564 YITRFTSKQYDTIKIYLTAVFKFIKDKNNPHQIENI--CTSISQETLFCYDAQYEILQHI 391
++ F D IKI + + + + NP N+ + QE + + + + L+H+
Sbjct: 18 FLLSFNVFSIDVIKIGIVDFDRIVIEVLNPQLKANLDQIKNRYQEQINTLNLELKNLKHM 77
Query: 390 YISLKTGSGFDITYFIKEMIYKIKYDILLHI--IASNTDAQ----NVHSLGYWRNELSEE 229
Y + D Y +K D L + +A N Q N++SL N SE
Sbjct: 78 YDKSIADNDLDNARSFGNQ-YNLKVDELKRVSSLAKNNLEQQRLANINSL----NNNSES 132
Query: 228 IGFIKNESKY-SHVRTGTLI--DNKPYILYQFFILFKAEKVATEILEKINNN 82
+ I +Y + + +LI N PYILY + V +LEK N N
Sbjct: 133 LSKILRGIQYVAEINGFSLIMKKNNPYILYHNSTVDITNDVVKHLLEKDNKN 184
>gi|2429426 (AF025457) No definition line found [Caenorhabditis elegans]
Length = 385
Score = 31.3 bits (69), Expect = 6.4
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 310 NIIFYFINHF--FDEISNIKTTSSF*RNIYMLEYFILSIITKKCFL*NRCTYIFYLVRIV 483
N+I +NH D I+ +K + +F R + ++ ++ + + F CT I Y +R
Sbjct: 80 NVINEVLNHLDLIDLIALMKVSRNFRRAVQNMKVCVIESLVVQLFEETDCTKIIYNLRYK 139
Query: 484 FIFYEFKHCCQVYFY 528
F + + C+V F+
Sbjct: 140 FEYRQNDAGCEVTFF 154
>gi|2128918|pir||D64490 hypothetical protein MJ1525 - Methanococcus jannaschii >gi|1592155
(U67593) putative transmembrane oligosaccharyl
transferase [Methanococcus jannaschii]
Length = 933
Score = 31.3 bits (69), Expect = 6.4
Identities = 21/72 (29%), Positives = 36/72 (49%), Gaps = 9/72 (12%)
Query: 285 TDAQNVHSL-GYWR--------NELSEEIGFIKNESKYSHVRTGTLIDNKPYILYQFFIL 133
TD V S+ G+W N+ E+ F K + Y + GT++ N Y + L
Sbjct: 757 TDIAPVWSMFGFWNFSLPPNTPNDKREKGAFFKGTAYY--LGNGTILANVNVYTYSYVTL 814
Query: 132 FKAEKVATEILEKINNNGNFL 70
+ ++T I++KIN +
Sbjct: 815 INSTNISTAIVQKINGQAKII 835
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115876537
Number of Sequences: 368476
Number of extensions: 2386443
Number of successful extensions: 5361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5361
Number of HSP's gapped (non-prelim): 11
length of query: 216
length of database: 112640273
effective HSP length: 53
effective length of query: 162
effective length of database: 93111045
effective search space: 15083989290
effective search space used: 15083989290
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)