BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII-9F
(771 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4008543|emb|CAA22512| (AL034492) putative deacetylase [Strept... 53 3e-06
gi|2920659 (AF047761) xylanase U; XYLU [Clostridium thermocellum] 50 2e-05
gi|4539104|emb|CAB39825| (AL049491) putative hydrolase [Mycobact... 50 2e-05
gi|2226222|emb|CAA74511| (Y14082) hypothetical protein [Bacillus... 50 2e-05
gi|2896733|emb|CAA17212| (AL021897) hypothetical protein Rv1096 ... 48 6e-05
gi|3721552|dbj|BAA33543| (AB010958) xylanase [Clostridium thermo... 48 7e-05
gi|477730|pir||B47692 nodulation protein nodB homolog - Bacillus... 43 0.002
gi|418389|sp|Q04729|YFU2_BACST HYPOTHETICAL 30.6 KD PROTEIN IN F... 43 0.002
gi|1103639|emb|CAA90745| (Z50866) endoxylanase [Cellulomonas fimi] 43 0.002
gi|2626811|dbj|BAA23389| (D83967) YfjS [Bacillus subtilis] >gi|2... 39 0.036
gi|1405808|emb|CAA67138| (X98514) nodB [Rhizobium tropici] 38 0.081
gi|46216|emb|CAA68620| (Y00548) nodB [Rhizobium leguminosarum] 38 0.11
gi|128438|sp|P04339|NODB_RHILV CHITOOLIGOSACCHARIDE DEACETYLASE ... 38 0.11
gi|420904|pir||S34304 nodulation protein nodB - Rhizobium sp >gi... 37 0.14
gi|2507080|sp|P50355|NODB_RHISN CHITOOLIGOSACCHARIDE DEACETYLASE... 37 0.14
gi|2498220|sp|Q06703|CDA1_YEAST CHITIN DEACETYLASE 1 PRECURSOR >... 36 0.41
gi|128436|sp|P24150|NODB_RHILP CHITOOLIGOSACCHARIDE DEACETYLASE ... 35 0.54
gi|128439|sp|P02963|NODB_RHIME CHITOOLIGOSACCHARIDE DEACETYLASE ... 35 0.70
gi|2760918 (AF038577) NodB [Sinorhizobium meliloti] 35 0.70
gi|1705803|sp|P50325|CHDE_MUCRO CHITIN DEACETYLASE PRECURSOR >gi... 34 0.92
gi|1085697|pir||S36603 chitin deacetylase - Mucor rouxii (fragment) 34 0.92
gi|2978425 (M64552) acetyl-xylan esterase [Streptomyces lividans] 34 0.92
gi|2498651|sp|Q52845|NODB_RHILO CHITOOLIGOSACCHARIDE DEACETYLASE... 34 1.2
gi|1709315|sp|P50354|NODB_RHIGA CHITOOLIGOSACCHARIDE DEACETYLASE... 34 1.2
gi|72758|pir||ZZZRB4 nodulation protein nodB - Rhizobium melilot... 34 1.6
gi|1531619 (U53327) NodB [Rhizobium sp.] 32 3.5
gi|128437|sp|P04676|NODB_RHILT CHITOOLIGOSACCHARIDE DEACETYLASE ... 32 3.5
gi|1085759|pir||S52741 endo-1,4-beta-xylanase (EC 3.2.1.8) precu... 32 4.6
>gi|4008543|emb|CAA22512| (AL034492) putative deacetylase [Streptomyces coelicolor]
Length = 260
Score = 52.7 bits (124), Expect = 3e-06
Identities = 44/166 (26%), Positives = 71/166 (42%)
Query: 516 CTKAGTIALTFDDGPTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHS 337
C IALTFD GP+ + R LDIL+E + ATF F +EGH
Sbjct: 61 CAHTKCIALTFDAGPSENSARLLDILKEKQVPATF-FLLGKRHIDTYPELVRRMADEGHE 119
Query: 336 IGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGCKIKYGRAPVEDGVVNETVYDAFKK 157
+ + + + D+I+E++ +ER TG + R P G ++TV+D ++
Sbjct: 120 VASHTWTHKILTDAEPDEIREELERPNKEIERLTGERPILMRPP--QGRTDDTVHDISRE 177
Query: 156 XKVIQSGYSYCFYDESAXPDDATELIXNTINSSNPKYESXIFLLHD 19
+ + ++ D D LI + + + I LLHD
Sbjct: 178 LGLAEVLWTVTAKDYKTNDSD---LITERVLDQSSR--DGIILLHD 218
>gi|2920659 (AF047761) xylanase U; XYLU [Clostridium thermocellum]
Length = 683
Score = 50.0 bits (117), Expect = 2e-05
Identities = 34/101 (33%), Positives = 45/101 (43%), Gaps = 1/101 (0%)
Query: 507 AGTIALTFDDGP-TAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHSIG 331
A +ALTFDDGP T R LD L++ ++KATF Q GH IG
Sbjct: 479 AKLVALTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMV-NSGHEIG 537
Query: 330 LRVNPQRDWENMDNDDIKEDIGTQVATVERETGCKIKYGRAP 205
NM D I++ I A +++ G K+ RAP
Sbjct: 538 NHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKFFRAP 579
>gi|4539104|emb|CAB39825| (AL049491) putative hydrolase [Mycobacterium leprae]
Length = 291
Score = 50.0 bits (117), Expect = 2e-05
Identities = 22/35 (62%), Positives = 26/35 (73%)
Query: 516 CTKAGTIALTFDDGPTAYTDRXLDILEENDIKATF 412
C + IALTFDDGP YTDR + IL++ND KATF
Sbjct: 43 CAQVKCIALTFDDGPGPYTDRLVQILKDNDAKATF 77
>gi|2226222|emb|CAA74511| (Y14082) hypothetical protein [Bacillus subtilis]
>gi|2633301|emb|CAB12805| (Z99109) similar to
endo-1,4-beta-xylanase [Bacillus subtilis]
Length = 282
Score = 49.6 bits (116), Expect = 2e-05
Identities = 26/58 (44%), Positives = 35/58 (59%)
Query: 501 TIALTFDDGPTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHSIGL 328
T+ LTFDDGP+A T R LD+L+ D+KATF + AE+EGH++GL
Sbjct: 86 TVYLTFDDGPSAVTTRLLDVLKSADVKATFFMLSP--RMNEFKQAVKRAEKEGHALGL 141
>gi|2896733|emb|CAA17212| (AL021897) hypothetical protein Rv1096 [Mycobacterium tuberculosis]
Length = 291
Score = 48.4 bits (113), Expect = 6e-05
Identities = 22/35 (62%), Positives = 25/35 (70%)
Query: 516 CTKAGTIALTFDDGPTAYTDRXLDILEENDIKATF 412
C+ +ALTFDDGP YTDR L IL +ND KATF
Sbjct: 43 CSVIKCVALTFDDGPGPYTDRLLHILTDNDAKATF 77
>gi|3721552|dbj|BAA33543| (AB010958) xylanase [Clostridium thermocellum]
Length = 683
Score = 48.0 bits (112), Expect = 7e-05
Identities = 33/101 (32%), Positives = 44/101 (42%), Gaps = 1/101 (0%)
Query: 507 AGTIALTFDDGP-TAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHSIG 331
A +ALTFDDGP T R LD L++ ++KATF Q GH IG
Sbjct: 479 AKLVALTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMV-NSGHEIG 537
Query: 330 LRVNPQRDWENMDNDDIKEDIGTQVATVERETGCKIKYGRAP 205
NM D I++ I A +++ G K+ R P
Sbjct: 538 NHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKFFRPP 579
>gi|477730|pir||B47692 nodulation protein nodB homolog - Bacillus stearothermophilus
Length = 265
Score = 43.4 bits (100), Expect = 0.002
Identities = 48/172 (27%), Positives = 69/172 (39%), Gaps = 3/172 (1%)
Query: 537 YVGVPDKCTKAGTIALTFDDG-PTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXX 361
Y+G P K I LTFD+G YT + LD+L+++D+ ATF T
Sbjct: 60 YLGDPSK----KEIYLTFDNGYENGYTSKILDVLKKHDVHATFFVTGHYLKTAPDLVKRM 115
Query: 360 XAEEEGHSIGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGCK-IKYGRAPVEDGVVN 184
+EGH +G D + D IK+++ V+ TG + Y R P G+ +
Sbjct: 116 V--KEGHIVGNHSWSHPDMTTISADKIKKELDAVSDKVKELTGQEGTVYVRPP--RGIFS 171
Query: 183 ETVYDAFKKXKVIQSGYSYCFYDESAXPDDATE-LIXNTINSSNPKYESXIFLLH 22
E +K +S F D N IN +P I LLH
Sbjct: 172 ERTLALSEKYGYRNIFWSLAFVDWKVNEQKGWRYAYDNIINQIHP---GAIILLH 223
>gi|418389|sp|Q04729|YFU2_BACST HYPOTHETICAL 30.6 KD PROTEIN IN FUMA 3'REGION PRECURSOR (ORF2)
>gi|551706 (L05611) [fumA(Bst)] gene products [Bacillus
stearothermophilus]
Length = 265
Score = 43.4 bits (100), Expect = 0.002
Identities = 48/172 (27%), Positives = 69/172 (39%), Gaps = 3/172 (1%)
Query: 537 YVGVPDKCTKAGTIALTFDDG-PTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXX 361
Y+G P K I LTFD+G YT + LD+L+++D+ ATF T
Sbjct: 60 YLGDPSK----KEIYLTFDNGYENGYTSKILDVLKKHDVHATFFVTGHYLKTAPDLVKRM 115
Query: 360 XAEEEGHSIGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGCK-IKYGRAPVEDGVVN 184
+EGH +G D + D IK+++ V+ TG + Y R P G+ +
Sbjct: 116 V--KEGHIVGNHSWSHPDMTTISADKIKKELDAVSDKVKELTGQEGTVYVRPP--RGIFS 171
Query: 183 ETVYDAFKKXKVIQSGYSYCFYDESAXPDDATE-LIXNTINSSNPKYESXIFLLH 22
E +K +S F D N IN +P I LLH
Sbjct: 172 ERTLALSEKYGYRNIFWSLAFVDWKVNEQKGWRYAYDNIINQIHP---GAIILLH 223
>gi|1103639|emb|CAA90745| (Z50866) endoxylanase [Cellulomonas fimi]
Length = 1187
Score = 43.4 bits (100), Expect = 0.002
Identities = 30/97 (30%), Positives = 41/97 (41%), Gaps = 4/97 (4%)
Query: 495 ALTFDDGPT-AYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHSIGLRVN 319
ALTFDDGP A T LD L E DI+ATF Q +GH++
Sbjct: 56 ALTFDDGPNGATTTALLDFLAERDIRATFCVIGQNIQAPGGADVLRRIVADGHTLCNHTT 115
Query: 318 PQRDWENMDNDDIKEDIGTQVATVERETG---CKIKYGRAP 205
D + ++ D+ + + G K+ Y RAP
Sbjct: 116 SYADMGGWTAEQVRADLVENLGIIRDALGDPDAKVPYFRAP 156
>gi|2626811|dbj|BAA23389| (D83967) YfjS [Bacillus subtilis] >gi|2633122|emb|CAB12627|
(Z99108) similar to polysaccharide deacetylase [Bacillus
subtilis]
Length = 263
Score = 39.1 bits (89), Expect = 0.036
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 513 TKAGTIALTFDDG-PTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHS 337
TK TI LTFD+G YT + LD+L+++ + TF T +EGH
Sbjct: 63 TKEKTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVT--GHFVKDQPQLIKRMSDEGHI 120
Query: 336 IGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGCKIK-YGRAPVEDGVVNETVYDAFK 160
IG D D I++++ + V + TG + Y R P GV +E V K
Sbjct: 121 IGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPP--RGVFSEYVLKETK 178
Query: 159 KXKVIQSGYSYCFYD 115
+ +S F D
Sbjct: 179 RLGYQTVFWSVAFVD 193
>gi|1405808|emb|CAA67138| (X98514) nodB [Rhizobium tropici]
Length = 219
Score = 37.9 bits (86), Expect = 0.081
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 540 CYVGVPDKC---TKAGTIALTFDDGPTAY-TDRXLDILEENDIKATFHFTTQXXXXXXXX 373
C +P+ C T +I LTFDDGP + T LD+L ++ ATF
Sbjct: 6 CLYEMPNACDDATDRPSIYLTFDDGPHPFCTPEILDVLAQHQAPATFFVIGTYAAERPKL 65
Query: 372 XXXXXAEEEGHSIGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGC---KIKYGRAP 205
A EGH + D N +I+ +I + +T C ++Y RAP
Sbjct: 66 IQRMIA--EGHKVANHTMTHPDLSNCGPGEIEHEISEASRAI--KTACPQASVQYMRAP 120
>gi|46216|emb|CAA68620| (Y00548) nodB [Rhizobium leguminosarum]
Length = 216
Score = 37.5 bits (85), Expect = 0.11
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 510 KAGTIALTFDDGPTAY-TDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHSI 334
+A + LTFDDGP + T + LD+L E+ + ATF A EGH +
Sbjct: 19 EARCVYLTFDDGPNPFCTPQILDVLAEHRVPATFFAIGSYVKDHPELIRRLVA--EGHDV 76
Query: 333 GLRVNPQRDWENMDNDDIKEDIG-TQVATVERETGCKIKYGRAPVEDGVVNETVYDA 166
D D D+K +I A V +++ RAP GV E V A
Sbjct: 77 ANHTMTHPDLATCDPKDVKREIDEAHQAIVSACPQALVRHLRAPY--GVWTEDVLSA 131
>gi|128438|sp|P04339|NODB_RHILV CHITOOLIGOSACCHARIDE DEACETYLASE (NODULATION PROTEIN B)
>gi|72759|pir||ZZZRBL nodulation protein nodB -
Rhizobium leguminosarum plasmid pRL1JI
>gi|46225|emb|CAA25813| (X01650) put. nodB protein
[Rhizobium leguminosarum]
Length = 216
Score = 37.5 bits (85), Expect = 0.11
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 510 KAGTIALTFDDGPTAY-TDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHSI 334
+A + LTFDDGP + T + LD+L E+ + ATF A EGH +
Sbjct: 19 EARCVYLTFDDGPNPFCTPQILDVLAEHRVPATFFAIGSYVKDHPELIRRLVA--EGHDV 76
Query: 333 GLRVNPQRDWENMDNDDIKEDIG-TQVATVERETGCKIKYGRAPVEDGVVNETVYDA 166
D D D+K +I A V +++ RAP GV E V A
Sbjct: 77 ANHTMTHPDLATCDPKDVKREIDEAHQAIVSACPQALVRHLRAPY--GVWTEDVLSA 131
>gi|420904|pir||S34304 nodulation protein nodB - Rhizobium sp >gi|312349|emb|CAA51773|
(X73362) nodC [Rhizobium sp.]
Length = 214
Score = 37.1 bits (84), Expect = 0.14
Identities = 19/39 (48%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 528 VPDKCTKAGTIALTFDDGPT-AYTDRXLDILEENDIKATF 412
VP T A ++ LTFDDGP +T LD+L E+ + ATF
Sbjct: 10 VPRSGTGAPSVYLTFDDGPNPVFTPEVLDVLAEHRVPATF 49
>gi|2507080|sp|P50355|NODB_RHISN CHITOOLIGOSACCHARIDE DEACETYLASE (NODULATION PROTEIN B) >gi|2182426
(AE000076) NodB [Rhizobium sp. NGR234]
Length = 215
Score = 37.1 bits (84), Expect = 0.14
Identities = 19/39 (48%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 528 VPDKCTKAGTIALTFDDGPT-AYTDRXLDILEENDIKATF 412
VP T A ++ LTFDDGP +T LD+L E+ + ATF
Sbjct: 10 VPRSGTGAPSVYLTFDDGPNPVFTPEVLDVLAEHRVPATF 49
>gi|2498220|sp|Q06703|CDA1_YEAST CHITIN DEACETYLASE 1 PRECURSOR >gi|1077329|pir||S51440 hypothetical
protein YLR308w - yeast (Saccharomyces cerevisiae)
>gi|577217 (U17247) Ylr308wp [Saccharomyces cerevisiae]
Length = 312
Score = 35.6 bits (80), Expect = 0.41
Identities = 42/170 (24%), Positives = 70/170 (40%), Gaps = 4/170 (2%)
Query: 516 CTKAGTIALTFDDGPTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGHS 337
C+K ++ TFDDGP+A T + LD L+ N F ++EGH
Sbjct: 117 CSK---LSQTFDDGPSASTTKLLDRLKHNST-----FFNLGVNIVQHPDIYQRMQKEGHL 168
Query: 336 IGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGCKIKYGRAPVEDGVVNETVYDAFKK 157
IG N+ N+ I I + + K+ R P G ++ V ++
Sbjct: 169 IGSHTWSHVYLPNVSNEKIIAQIEWSIWAMNATGNHTPKWFRPPY--GGIDNRVRAITRQ 226
Query: 156 XKVIQSGYSYCFYDESAXPDDAT----ELIXNTINSSNPKYESXIFLLHDEREK 7
+ + + +D S +D+ E++ N IN + K + + L HD EK
Sbjct: 227 FGLQAVLWDHDTFDWSLLLNDSVITEQEILQNVINWN--KSGTGLILEHDSTEK 278
>gi|128436|sp|P24150|NODB_RHILP CHITOOLIGOSACCHARIDE DEACETYLASE (NODULATION PROTEIN B)
>gi|95252|pir||D38180 nodulation protein nodB homolog -
Rhizobium leguminosarum bv. phaseoli >gi|150476 (M58626)
nodulation protein [Plasmid p42d]
Length = 229
Score = 35.2 bits (79), Expect = 0.54
Identities = 49/175 (28%), Positives = 67/175 (38%), Gaps = 3/175 (1%)
Query: 543 LCYV-GVPDKCTKAGTIALTFDDGPTAY-TDRXLDILEENDIKATFHFTTQXXXXXXXXX 370
LC V G D T ++ LTFDDGP + T LDIL E+ + ATF F
Sbjct: 7 LCEVHGERDDGTGRPSLYLTFDDGPHPFCTPEILDILAEHRVPATF-FVIGEFLADQSKL 65
Query: 369 XXXXAEEEGHSIGLRVNPQRDWENMDNDDIKEDI-GTQVATVERETGCKIKYGRAPVEDG 193
E H + D + + ++ I T A G + RAP G
Sbjct: 66 IQRMIAEGHHEVANHTMTHPDLSDCEPRRVQRQILETNRAIKMASPGGGAAHPRAPY--G 123
Query: 192 VVNETVYDAFKKXKVIQSGYSYCFYDESAXPDDATELIXNTINSSNPKYESXIFLLHD 19
+ E V A +S D S+ DA ++ + + S P I LLHD
Sbjct: 124 IWTEEVLKASANAATHAVHWSVDPRDWSSPGADA--IVNDVLQSVRP---GAIVLLHD 176
>gi|128439|sp|P02963|NODB_RHIME CHITOOLIGOSACCHARIDE DEACETYLASE (NODULATION PROTEIN B)
>gi|72757|pir||ZZZRBM nodulation protein nodB -
Rhizobium meliloti >gi|152343 (M11268) nodB gene product
[Sym plasmid]
Length = 217
Score = 34.8 bits (78), Expect = 0.70
Identities = 20/39 (51%), Positives = 25/39 (63%), Gaps = 4/39 (10%)
Query: 528 VPDKC---TKAGTIALTFDDGPTAY-TDRXLDILEENDIKATF 412
VP C T+ +I LTFDDGP + T LD+L E + ATF
Sbjct: 10 VPSNCDYGTEDRSIYLTFDDGPNPHCTPEILDVLAEYGVPATF 52
>gi|2760918 (AF038577) NodB [Sinorhizobium meliloti]
Length = 217
Score = 34.8 bits (78), Expect = 0.70
Identities = 20/39 (51%), Positives = 25/39 (63%), Gaps = 4/39 (10%)
Query: 528 VPDKC---TKAGTIALTFDDGPTAY-TDRXLDILEENDIKATF 412
VP C T+ +I LTFDDGP + T LD+L E + ATF
Sbjct: 10 VPSNCDYGTEDRSIYLTFDDGPNPHCTPEILDVLAEYGVPATF 52
>gi|1705803|sp|P50325|CHDE_MUCRO CHITIN DEACETYLASE PRECURSOR >gi|543511|pir||A47713 chitin
deacetylase (EC 3.5.1.41) precursor - Mucor rouxii
>gi|854339|emb|CAA79525| (Z19109) chitin deacetylase
[Mucor rouxii]
Length = 421
Score = 34.4 bits (77), Expect = 0.92
Identities = 24/108 (22%), Positives = 38/108 (34%)
Query: 519 KCTKAGTIALTFDDGPTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGH 340
KC + T LT+DDGP + D L+E +KA+ + +GH
Sbjct: 152 KCPEPETWGLTYDDGPNCSHNAFYDYLQEQKLKASMFYIGSNVVDWPYGAMRGVV--DGH 209
Query: 339 SIGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGCKIKYGRAPVED 196
I N ++ + ++ TG +Y R P D
Sbjct: 210 HIASHTWSHPQMTTKTNQEVLAEFYYTQKAIKLATGLTPRYWRPPYGD 257
>gi|1085697|pir||S36603 chitin deacetylase - Mucor rouxii (fragment)
Length = 428
Score = 34.4 bits (77), Expect = 0.92
Identities = 24/108 (22%), Positives = 38/108 (34%)
Query: 519 KCTKAGTIALTFDDGPTAYTDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXAEEEGH 340
KC + T LT+DDGP + D L+E +KA+ + +GH
Sbjct: 159 KCPEPETWGLTYDDGPNCSHNAFYDYLQEQKLKASMFYIGSNVVDWPYGAMRGVV--DGH 216
Query: 339 SIGLRVNPQRDWENMDNDDIKEDIGTQVATVERETGCKIKYGRAPVED 196
I N ++ + ++ TG +Y R P D
Sbjct: 217 HIASHTWSHPQMTTKTNQEVLAEFYYTQKAIKLATGLTPRYWRPPYGD 264
>gi|2978425 (M64552) acetyl-xylan esterase [Streptomyces lividans]
Length = 335
Score = 34.4 bits (77), Expect = 0.92
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 504 GTIALTFDDGPTAYTDRXLDILEENDIKAT 415
G + LTFDDGP+ T L+ L +N ++AT
Sbjct: 46 GYVGLTFDDGPSGSTQSLLNALRQNGLRAT 75
>gi|2498651|sp|Q52845|NODB_RHILO CHITOOLIGOSACCHARIDE DEACETYLASE (NODULATION PROTEIN B)
>gi|95171|pir||S21412 nodulation protein nodB -
Rhizobium loti (fragment) >gi|46242|emb|CAA46575|
(X65620) nodulation protein B, 5'end [Mesorhizobium
loti]
Length = 52
Score = 34.0 bits (76), Expect = 1.2
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 501 TIALTFDDGPT-AYTDRXLDILEENDIKATF 412
++ LTFDDGP +T + LD+L +N + ATF
Sbjct: 22 SVYLTFDDGPNPCFTPQILDVLAQNRVPATF 52
>gi|1709315|sp|P50354|NODB_RHIGA CHITOOLIGOSACCHARIDE DEACETYLASE (NODULATION PROTEIN B)
>gi|1001913|emb|CAA60878| (X87578) nodB [Rhizobium
galegae]
Length = 214
Score = 34.0 bits (76), Expect = 1.2
Identities = 28/109 (25%), Positives = 41/109 (36%), Gaps = 2/109 (1%)
Query: 531 GVPDKCTKAGTIALTFDDGPTAY-TDRXLDILEENDIKATFHFTTQXXXXXXXXXXXXXA 355
G D C + LTFDDGP + T LD+L ++ + ATF
Sbjct: 15 GADDPC-----VYLTFDDGPNPFCTPHILDVLAQHAVSATFFVI--GANAEVHPGLVQRI 67
Query: 354 EEEGHSIGLRVNPQRDWENMDNDDIKEDIG-TQVATVERETGCKIKYGRAP 205
EGH + D ++ +I A + G I++ RAP
Sbjct: 68 VSEGHGVANHTMTHPDLATCSRPQVEREIDEANRAIISACPGASIRHIRAP 118
>gi|72758|pir||ZZZRB4 nodulation protein nodB - Rhizobium meliloti (strain 41)
>gi|46290|emb|CAA25809| (X01649) open reading frame
(put. nodB gene) (aa 1-217) [Sinorhizobium meliloti]
Length = 217
Score = 33.6 bits (75), Expect = 1.6
Identities = 19/39 (48%), Positives = 25/39 (63%), Gaps = 4/39 (10%)
Query: 528 VPDKC---TKAGTIALTFDDGPTAY-TDRXLDILEENDIKATF 412
+P C T+ +I LTFDDGP + T LD+L E + ATF
Sbjct: 10 MPSNCDYGTEDRSIYLTFDDGPNPHCTPEILDVLAEYGVPATF 52
>gi|1531619 (U53327) NodB [Rhizobium sp.]
Length = 218
Score = 32.5 bits (72), Expect = 3.5
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 528 VPDKC---TKAGTIALTFDDGPT-AYTDRXLDILEENDIKATF 412
VP C T+ ++ LTFDDGP T + LD+L ++ + ATF
Sbjct: 10 VPSDCADGTQDRSVYLTFDDGPNPVCTPQILDLLAQHRVPATF 52
>gi|128437|sp|P04676|NODB_RHILT CHITOOLIGOSACCHARIDE DEACETYLASE (NODULATION PROTEIN B)
>gi|78047|pir||B23766 nodulation protein nodB -
Rhizobium leguminosarum bv. trifolii
>gi|46463|emb|CAA27352| (X03721) nod B (aa 1-215)
[Rhizobium trifolii]
Length = 215
Score = 32.5 bits (72), Expect = 3.5
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 498 IALTFDDGPTAY-TDRXLDILEENDIKATF 412
I LTFDDGP + T + LD+L E+ + ATF
Sbjct: 22 IYLTFDDGPNPHCTGQILDVLAEHRVPATF 51
>gi|1085759|pir||S52741 endo-1,4-beta-xylanase (EC 3.2.1.8) precursor - Cellvibrio mixtus
>gi|2147353|pir||S59631 endo-1,4-beta-xylanase (EC
3.2.1.8) xynA precursor - Cellvibrio mixtus
>gi|757807|emb|CAA88761| (Z48925) endo-beta-1,4-xylanase
[Cellvibrio mixtus]
Length = 656
Score = 32.1 bits (71), Expect = 4.6
Identities = 12/28 (42%), Positives = 21/28 (74%)
Query: 507 AGTIALTFDDGPTAYTDRXLDILEENDI 424
AG + +TFDDGP A T +++L++N++
Sbjct: 392 AGYVGITFDDGPGANTTTLVNLLKQNNL 419
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110540308
Number of Sequences: 369800
Number of extensions: 1794612
Number of successful extensions: 3733
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3714
Number of HSP's gapped (non-prelim): 30
length of query: 257
length of database: 113,023,754
effective HSP length: 54
effective length of query: 202
effective length of database: 93054554
effective search space: 18797019908
effective search space used: 18797019908
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)