BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII-7F
         (635 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2702395 (AF038608) No definition line found [Caenorhabditis e...    31  6.2
gi|2982975 (AE000681) hypothetical protein [Aquifex aeolicus]          31  6.2


>gi|2702395 (AF038608) No definition line found [Caenorhabditis elegans]
           Length = 606
           
 Score = 31.3 bits (69), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 118 KRSSYRDNSFNFPIIFLAWFTFTNHFLKLFISYIF 14
           K S      F+ P I++ W +   HF+K FISY++
Sbjct: 294 KLSQLTSAQFHSPHIYIFWQSIVVHFIKEFISYLY 328



>gi|2982975 (AE000681) hypothetical protein [Aquifex aeolicus]
           Length = 338
           
 Score = 31.3 bits (69), Expect = 6.2
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 398 NLTSN*MSKGFNQIA*DYEDF-ILQTIISYFKKIENNINDYYNTSIHHISLKILESSTKK 574
           N+ SN + +   +++   ED   L+  + + KKI N +ND  N       +    S + K
Sbjct: 58  NILSNILIRELERVSEKKEDIKFLRRELKFLKKIRNRLNDLTNLEKRDAYI----SLSGK 113

Query: 575 IVKY*NTLRTEMNILK 622
            ++Y   LR  +N+LK
Sbjct: 114 RIRYKKVLRDTLNLLK 129


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110124226
Number of Sequences: 368476
Number of extensions: 2066140
Number of successful extensions: 4016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4011
Number of HSP's gapped (non-prelim): 6
length of query: 211
length of database: 112640273
effective HSP length: 53
effective length of query: 158
effective length of database: 93111045
effective search space: 14711545110
effective search space used: 14711545110
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)