BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII-3F
         (715 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3293522 (AF069195) NADH dehydrogenase 1 [Praon dorsale]             33  2.5
gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P...    32  3.2
gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharo...    31  7.3


>gi|3293522 (AF069195) NADH dehydrogenase 1 [Praon dorsale]
           Length = 155
           
 Score = 32.8 bits (73), Expect = 2.5
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 189 LFIISFLTGCAYSSLRPLAPKARLNSY*LVSLQICINLIYLMLQSVKILRLVY 31
           L I  + + C+YS L  +   A+  SY  V+  IC+ +I +M+ S+ +  L+Y
Sbjct: 70  LMIAGWSSNCSYSMLGSMRSVAQSISY-EVTFSICMLIILMMINSINLSNLIY 121



>gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P3.18 (PFC0425w), Hypothetical
            protein, len: 4551 aa [Plasmodium falciparum]
            Length = 4550
            
 Score = 32.5 bits (72), Expect = 3.2
 Identities = 25/87 (28%), Positives = 47/87 (53%), Gaps = 4/87 (4%)

Query: 466  NITXSNYSVMYSSXIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRANIIPGNH 287
            NI+ +N +++    + EYLLNK N        + +  + +  N  L+K YN+ N    N+
Sbjct: 3197 NISHNNNNILIL-LMNEYLLNKDND-------INDYNIKEYLNEILNK-YNKFNFYENNY 3247

Query: 286  NEIKEHYYLLHKTIPN----NIQQILKNYFF 206
            + IK   ++ HK +P+    ++  + K +FF
Sbjct: 3248 DIIKYSTFVDHKIVPSVSSFSVFDLYKLFFF 3278



>gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharomyces pombe]
            Length = 1935
            
 Score = 31.3 bits (69), Expect = 7.3
 Identities = 20/63 (31%), Positives = 31/63 (48%)

Query: 394  SNILLTLHLENEKLVDQENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIPNNIQQILKN 215
            S +++T   E EK     + C+++  N     P     I  +YYL H TI N +Q+I +N
Sbjct: 1592 SKLVVTAFNELEK-----SACIYRV-NEETYAPTTLGRIVSYYYLFHTTIRNFVQKITEN 1645

Query: 214  YFF 206
              F
Sbjct: 1646 AEF 1648


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110108006
Number of Sequences: 368476
Number of extensions: 1725097
Number of successful extensions: 3392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3390
Number of HSP's gapped (non-prelim): 5
length of query: 238
length of database: 112640273
effective HSP length: 53
effective length of query: 184
effective length of database: 93111045
effective search space: 17132432280
effective search space used: 17132432280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)