BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII-2R
(820 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 34 1.7
gi|3845142 (AE001384) hypothetical protein [Plasmodium falciparum] 33 2.2
gi|4049751 (AF063866) ORF MSV228 leucine rich repeat gene family... 33 2.2
gi|1718072|sp|P52438|V120_HSV7J CAPSID ASSEMBLY PROTEIN U30 >gi|... 33 2.2
gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P... 33 2.2
gi|3293522 (AF069195) NADH dehydrogenase 1 [Praon dorsale] 33 2.9
gi|829028|gb|AAD15023| (J01435) unknown protein [Rattus norvegicus] 32 6.5
gi|128764|sp|P05508|NU4M_RAT NADH-UBIQUINONE OXIDOREDUCTASE CHAI... 32 6.5
gi|3845215 (AE001402) hypothetical protein [Plasmodium falciparum] 32 6.5
gi|4049822 (AF063866) ORF MSV155 putative RNA polymerase second ... 32 6.5
gi|1077546|pir||S52708 hypothetical protein YDR202c - yeast (Sac... 31 8.6
gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharo... 31 8.6
gi|4493964|emb|CAB39023| (AL034559) predicted using hexExon; MAL... 31 8.6
gi|3845129 (AE001381) hypothetical protein [Plasmodium falciparum] 31 8.6
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 33.6 bits (75), Expect = 1.7
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 496 SYS*IKIYKKNITYSNYSVMYSSDIYEYLL--------NKLNSNILLTLHLENEK----- 356
+YS I++ KNI N ++Y+ IY Y L N N I+L + N K
Sbjct: 440 NYSNIQLLIKNI--HNKWILYN--IYTYYLYYYHIKFYNLYNKGIILNNN--NNKYNVIY 493
Query: 355 -LVDQENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIP----NNIQQILKNYFF*PNKT 191
L++ N + +Y N N+N I +YY NNIQ + N F N
Sbjct: 494 FLINYFNLFSNYYYKIYN---NNYNFINSNYYFKKMNFILKNFNNIQ--ILNKLFYVNNI 548
Query: 190 FIYYKFPDRL 161
FIYYK+ +L
Sbjct: 549 FIYYKYEKKL 558
>gi|3845142 (AE001384) hypothetical protein [Plasmodium falciparum]
Length = 2539
Score = 33.2 bits (74), Expect = 2.2
Identities = 26/87 (29%), Positives = 42/87 (47%), Gaps = 16/87 (18%)
Query: 475 YKKNITYSNYSVMYSSDIYEYLL----------------NKLNSNILLTLHLENEKLVDQ 344
YK N Y +VMY DIY Y L NKLN ++ +N
Sbjct: 1015 YKGNNIYKIKTVMYQKDIYNYYLLNILLLVGVKIYIRQHNKLNKESEYNVNSQNLIGSKS 1074
Query: 343 ENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIPNNIQQILKN 215
++ ++ + + I N +I +Y + K I N ++I+ N
Sbjct: 1075 KSSKIYMVHFITSEISFNKKKILRPFYKIQKKINNKYKRIIMN 1117
>gi|4049751 (AF063866) ORF MSV228 leucine rich repeat gene family protein,
similar to Amsacta moorei entomopoxvirus Q3 ORF
SW:P28854 [Melanoplus sanguinipes entomopoxvirus]
Length = 279
Score = 33.2 bits (74), Expect = 2.2
Identities = 25/87 (28%), Positives = 43/87 (48%), Gaps = 9/87 (10%)
Query: 484 IKIYKKNITYSNYSVMYSSDIYEYLLNKLNSNILL----TLHLENEKLVDQENFCLHKFY 317
+K+ K NIT+ N S++Y+S++ ++ L+ T+ LE + CL
Sbjct: 112 LKVLKTNITFINKSILYNSNLLSIKFINCDTTSLILPQSTISLEFNNTFTYDYTCLESLI 171
Query: 316 NRANII-----PGNHNEIKEHYYLLHKTIPNNIQQI 224
N +I GN N +K I NNI+++
Sbjct: 172 NLKELILKKCYIGNLNTVK---------ISNNIEKL 198
>gi|1718072|sp|P52438|V120_HSV7J CAPSID ASSEMBLY PROTEIN U30 >gi|1139632 (U43400) U30 gene product
[Human herpesvirus 7] >gi|2746260 (AF037218) tegument
protein [Human herpesvirus 7]
Length = 938
Score = 33.2 bits (74), Expect = 2.2
Identities = 28/88 (31%), Positives = 42/88 (46%)
Query: 484 IKIYKKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRAN 305
+KI+ KNI+ N D+Y Y L K N +IL L LEN + F H +R N
Sbjct: 273 LKIFSKNISAKN------EDLYIYPLLKTNFSILTFLSLEN--IFFHHGFIYH-ILHRTN 323
Query: 304 IIPGNHNEIKEHYYLLHKTIPNNIQQIL 221
I P ++ + ++ + IQQ+L
Sbjct: 324 ITPTEEKKLGK----INGFLNTVIQQVL 347
>gi|3649772|emb|CAB11121| (Z98547) predicted using hexExon; MAL3P3.18 (PFC0425w), Hypothetical
protein, len: 4551 aa [Plasmodium falciparum]
Length = 4550
Score = 33.2 bits (74), Expect = 2.2
Identities = 25/87 (28%), Positives = 48/87 (54%), Gaps = 4/87 (4%)
Query: 466 NITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRANIIPGNH 287
NI+++N +++ + EYLLNK N + + + + N L+K YN+ N N+
Sbjct: 3197 NISHNNNNILILL-MNEYLLNKDND-------INDYNIKEYLNEILNK-YNKFNFYENNY 3247
Query: 286 NEIKEHYYLLHKTIPN----NIQQILKNYFF 206
+ IK ++ HK +P+ ++ + K +FF
Sbjct: 3248 DIIKYSTFVDHKIVPSVSSFSVFDLYKLFFF 3278
>gi|3293522 (AF069195) NADH dehydrogenase 1 [Praon dorsale]
Length = 155
Score = 32.8 bits (73), Expect = 2.9
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 189 LFIISFLTGCAYSSLRPLAPKARLNSY*LVSLQICINLIYLMLQSVKILRLVY 31
L I + + C+YS L + A+ SY V+ IC+ +I +M+ S+ + L+Y
Sbjct: 70 LMIAGWSSNCSYSMLGSMRSVAQSISY-EVTFSICMLIILMMINSINLSNLIY 121
>gi|829028|gb|AAD15023| (J01435) unknown protein [Rattus norvegicus]
Length = 459
Score = 31.7 bits (70), Expect = 6.5
Identities = 20/65 (30%), Positives = 34/65 (51%)
Query: 511 SFLLQSYS*IKIYKKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFC 332
SFL+ S +++ + Y N+SVM+SSD L L + +L + L ++ + +EN
Sbjct: 31 SFLVSLLSLSLLWQNDENYLNFSVMFSSDPLSTPLIILTTWLLPLMMLASQNHMKKENMM 90
Query: 331 LHKFY 317
K Y
Sbjct: 91 HQKLY 95
>gi|128764|sp|P05508|NU4M_RAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|92970|pir||S04756 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - rat
mitochondrion (SGC1) >gi|639984|emb|CAA32963| (X14848)
NADH subunit 4 [Rattus norvegicus]
Length = 459
Score = 31.7 bits (70), Expect = 6.5
Identities = 20/65 (30%), Positives = 34/65 (51%)
Query: 511 SFLLQSYS*IKIYKKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFC 332
SFL+ S +++ + Y N+SVM+SSD L L + +L + L ++ + +EN
Sbjct: 31 SFLVSLLSLSLLWQNDENYLNFSVMFSSDPLSTPLIILTTWLLPLMMLASQNHMKKENMM 90
Query: 331 LHKFY 317
K Y
Sbjct: 91 HQKLY 95
>gi|3845215 (AE001402) hypothetical protein [Plasmodium falciparum]
Length = 3973
Score = 31.7 bits (70), Expect = 6.5
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 481 KIYKKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRA-- 308
K +KK I Y Y++ +S+I+E ++ + N E + N C + +
Sbjct: 2174 KDFKKEIYYYLYNLNIASEIFELIIKAIYIN-------ETKIYPLIINICYDRNISNIFF 2226
Query: 307 NIIPGNHNEIKEHYYLLHKTIPNNIQQILKNYFF*PNKTFIYYKF 173
NI N N I E Y LHK ++I+ + Y NK+ +K+
Sbjct: 2227 NIDYDNLNSILEKYTYLHKKKKDHIKNL--KYLLCKNKSIHMHKY 2269
>gi|4049822 (AF063866) ORF MSV155 putative RNA polymerase second largest subunit
cowpox RPO132 homolog (vaccinia A24R), similar to
SW:P17474 [Melanoplus sanguinipes entomopoxvirus]
Length = 1190
Score = 31.7 bits (70), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 463 ITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYN 314
I Y Y+ M S+DI EY+ NK+ L ++ +E+L D +C H YN
Sbjct: 976 INYPTYTDMTSTDIIEYIRNKIKP---LYPNISDEELNDIV-YCRHVIYN 1021
>gi|1077546|pir||S52708 hypothetical protein YDR202c - yeast (Saccharomyces cerevisiae)
>gi|755794|emb|CAA88714| (Z48784) unknown [Saccharomyces
cerevisiae]
Length = 351
Score = 31.3 bits (69), Expect = 8.6
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 634 IIKKGYYKIPFSLELRRDVENYKRYIFQ*TEELMFRL*LMISFLLQSYS*IKIYKKNITY 455
I ++G Y + F + +R FQ +++MFR+ ++FLL +S I + KNI
Sbjct: 84 ITRQGQYIVDFHIVVRFPQ-------FQRGKQVMFRMNTGLNFLLIQFSKIMTHLKNILE 136
Query: 454 SNYSVMYSSDIYEYL------LNKLNSNILLTLHLENEKLVDQEN 338
+ ++D+ E++ + LN +++L + + + ++N
Sbjct: 137 ILNQLQVATDVSEFVSKFGVAMELLNHSLILLQNPPRDLVFPEDN 181
>gi|3080535|emb|CAA18663| (AL022600) RNA helicase [Schizosaccharomyces pombe]
Length = 1935
Score = 31.3 bits (69), Expect = 8.6
Identities = 20/63 (31%), Positives = 31/63 (48%)
Query: 394 SNILLTLHLENEKLVDQENFCLHKFYNRANIIPGNHNEIKEHYYLLHKTIPNNIQQILKN 215
S +++T E EK + C+++ N P I +YYL H TI N +Q+I +N
Sbjct: 1592 SKLVVTAFNELEK-----SACIYRV-NEETYAPTTLGRIVSYYYLFHTTIRNFVQKITEN 1645
Query: 214 YFF 206
F
Sbjct: 1646 AEF 1648
>gi|4493964|emb|CAB39023| (AL034559) predicted using hexExon; MAL3P7.1 (PFC0860w),
Kinesin-related protein, len: 1201 aa; Similarity to
kinesin-related protein. D.melanogaster kinesin-like
protein 67A (TR:P91945) BLAST Score: 664, sum P(2) =
1.9e-67; ...
Length = 1200
Score = 31.3 bits (69), Expect = 8.6
Identities = 28/103 (27%), Positives = 53/103 (51%)
Query: 595 ELRRDVENYKRYIFQ*TEELMFRL*LMISFLLQSYS*IKIYKKNITYSNYSVMYSSDIYE 416
E R+ V++ K ++Q EE F L +FL ++ + + I K++ +N S++ ++
Sbjct: 680 EYRKKVDSLKD-LYQ--EEKQFLNNLFDTFLEKNLNYV-INSKDVNDNNKSLLEEMIFFK 735
Query: 415 YLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRANIIPGNH 287
+ NK+N N L+ NEK+VD+ N N++ N+
Sbjct: 736 HNENKVNENFLV-----NEKVVDKNNVLNGNVMVDENVVDKNN 773
>gi|3845129 (AE001381) hypothetical protein [Plasmodium falciparum]
Length = 646
Score = 31.3 bits (69), Expect = 8.6
Identities = 25/74 (33%), Positives = 35/74 (46%)
Query: 472 KKNITYSNYSVMYSSDIYEYLLNKLNSNILLTLHLENEKLVDQENFCLHKFYNRANIIPG 293
++NI Y + D E +L+K NIL EN ++EN LHK ANII
Sbjct: 402 EENILYKEEENILHKDEEENILHKEEENILHKDEEENILYKEEENI-LHK--EEANIIET 458
Query: 292 NHNEIKEHYYLLHK 251
+ E+K+ L K
Sbjct: 459 KNAEVKKKKNTLRK 472
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131204182
Number of Sequences: 368476
Number of extensions: 2314486
Number of successful extensions: 5086
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5072
Number of HSP's gapped (non-prelim): 25
length of query: 273
length of database: 112640273
effective HSP length: 54
effective length of query: 218
effective length of database: 92742569
effective search space: 20217880042
effective search space used: 20217880042
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)