BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII-28F
         (488 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2493012|sp|Q12697|ATC9_YEAST PROBABLE CALCIUM-TRANSPORTING AT...    32  1.9
gi|133591|sp|P18458|RRPB_BEV RNA-DIRECTED RNA POLYMERASE (ORF1B)...    32  2.5


>gi|2493012|sp|Q12697|ATC9_YEAST PROBABLE CALCIUM-TRANSPORTING ATPASE 9 >gi|2132937|pir||S67195
            probable membrane protein YOR291w - yeast (Saccharomyces
            cerevisiae) >gi|1420646|emb|CAA99518| (Z75199) ORF
            YOR291w [Saccharomyces cerevisiae]
            Length = 1472
            
 Score = 32.5 bits (72), Expect = 1.9
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 160  ECNNTYTF--DIFTMLGIKISILPNEFMNYFILNNHSYLEIEIDDKTEIV 17
            ECN T     D+F +L    + +P E++N  +LN+  Y  +  D+K E++
Sbjct: 1123 ECNYTLAVSGDVFRLLFRDENEIPEEYLNEILLNSSIYARMSPDEKHELM 1172



>gi|133591|sp|P18458|RRPB_BEV RNA-DIRECTED RNA POLYMERASE (ORF1B) >gi|94017|pir||S11238 polymerase
            - Berne virus >gi|1334814|emb|CAA36601| (X52374) 2nd
            polymerase reading frame (AA 1-2291) [Berne virus]
            Length = 2291
            
 Score = 32.1 bits (71), Expect = 2.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 378  NILSTPKGYGNLFKIFPNYKVFITGYKSFYSG 473
            NILS    Y N   I PN+KVF T +   YSG
Sbjct: 2227 NILSRIAAYRNKLCIVPNFKVFSTSFSYKYSG 2258


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75645462
Number of Sequences: 368476
Number of extensions: 1394378
Number of successful extensions: 3730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3729
Number of HSP's gapped (non-prelim): 2
length of query: 162
length of database: 112640273
effective HSP length: 52
effective length of query: 110
effective length of database: 93479521
effective search space: 10282747310
effective search space used: 10282747310
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)