BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII-27F
         (486 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2983376 (AE000709) flagellar protein FlgA [Aquifex aeolicus]        36  0.13
gi|1171858|sp|P21301|NUCM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 4...    31  5.7
gi|1707895|sp|P52306|GDS1_HUMAN RAP1 GTPASE-GDP DISSOCIATION STI...    30  9.7


>gi|2983376 (AE000709) flagellar protein FlgA [Aquifex aeolicus]
           Length = 223
           
 Score = 36.4 bits (82), Expect = 0.13
 Identities = 26/86 (30%), Positives = 44/86 (50%), Gaps = 5/86 (5%)

Query: 327 YDYMFLFLILTFQLKMDSIVEAEIREIIKDKSSFYNYKGPILKEFEDNTSDFCIFDYKCL 148
           Y   FLF + TF L ++S+++ E+R+   ++    NYK  +L    DN S         +
Sbjct: 21  YAVNFLFFLFTFSLDLESLIKNELRKEFGEEVRLKNYK--VLTGIPDNFSK--------V 70

Query: 147 EIKLKKN-----IEILPTLVGDCVKIIGFKC 70
           E+K+ KN     + +  T VG     + +KC
Sbjct: 71  ELKVYKNSPRGFLHLKNTKVGTIALELEWKC 101



>gi|1171858|sp|P21301|NUCM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT HOMOLOG (NADH
           DEHYDROGENASE SUBUNIT 7 HOMOLOG) >gi|102130|pir||A35693
           NADH dehydrogenase (EC 1.6.99.3) chain 7 - Trypanosoma
           brucei mitochondrion (SGC6)
           Length = 386
           
 Score = 30.9 bits (68), Expect = 5.7
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 378 MIFKCQ--KCFESYKYISFYDYMFLFLILTFQLKMDSIVEAEIREIIKDKSSFYNYKGPI 205
           M++ C+   C+E Y ++  YDY F F+   F      + +  +  +I  +  F  +    
Sbjct: 229 MVWDCRLFSCYELY-FMFCYDYCFCFIGDAFDRLFLRLFDMRMSLLICKQCFFVGF---F 284

Query: 204 LKEFEDNTSDFCIFDYKCLEIKLKKNIEILPTLVGDCVKIIGFKCNNNSLSKLCI 40
           +  F       C+FDY   +I ++  I +  +L   C+  I F C  +   + C+
Sbjct: 285 VFGF------VCLFDYLYCDITIETIIMLFYSLWCCCLPGISFACVEHPKGEYCL 333



>gi|1707895|sp|P52306|GDS1_HUMAN RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1 (SMG P21 STIMULATORY
           GDP/GTP EXCHANGE PROTEIN) (SMG GDS PROTEIN)
           >gi|2136175|pir||I37456 smg GDS - human
           >gi|32080|emb|CAA45067| (X63465) smg GDS [Homo sapiens]
           Length = 558
           
 Score = 30.1 bits (66), Expect = 9.7
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 129 NIEILPTLVGDCVKIIGFKCNNNSLSKLC-INFKNLYCLKS 10
           N+ ++PTLV    K++G  C N +L+++C + F NL  L+S
Sbjct: 129 NMGVIPTLV----KLLGIHCQNAALTEMCLVAFGNLAELES 165


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 12, 1999 12:54 PM
  Number of letters in database: 112,640,273
  Number of sequences in database:  368,476
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74702871
Number of Sequences: 368476
Number of extensions: 1294487
Number of successful extensions: 3083
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3082
Number of HSP's gapped (non-prelim): 3
length of query: 162
length of database: 112640273
effective HSP length: 52
effective length of query: 109
effective length of database: 93479521
effective search space: 10189267789
effective search space used: 10189267789
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)