BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII-26R
(692 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|130593|sp|P05400|POL_CERV ENZYMATIC POLYPROTEIN [CONTAINS: AS... 35 0.47
gi|2147954|pir||S68350 pol polyprotein - Tribolium brevicornis r... 32 3.1
gi|2147955|pir||S68349 pol polyprotein - Tribolium freemani retr... 32 3.1
gi|2791289|emb|CAA04050| (AJ000387) protease [Drosophila melanog... 32 5.3
gi|4235644 (AF119040) polyprotein [Lycopersicon esculentum] 31 7.0
gi|102939|pir||B36329 hypothetical protein 2 - cabbage looper tr... 31 9.2
gi|1226168 (M32662) ORF B (bases 1850-5560) first start codon at... 31 9.2
>gi|130593|sp|P05400|POL_CERV ENZYMATIC POLYPROTEIN [CONTAINS: ASPARTIC PROTEASE ; ENDONUCLEASE;
REVERSE TRANSCRIPTASE ] >gi|76775|pir||S00854
hypothetical protein 5 - carnation etched ring virus
>gi|58863|emb|CAA28360| (X04658) pot. ORF 5 (AA 1-659)
[Carnation etched ring virus] >gi|225356|prf||1301227E
ORF 5 [Carnation etched ring virus]
Length = 659
Score = 35.2 bits (79), Expect = 0.47
Identities = 27/85 (31%), Positives = 41/85 (47%), Gaps = 18/85 (21%)
Query: 364 IHKSNETVHKYSI------------IEK*FYVIYXTIEIFKILFSCVNIIISADNKNLIS 221
IH S+E + +Y+ EK + I+ F I + +I DNKN
Sbjct: 548 IHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTH 607
Query: 220 LVKTHLQ------KXXKWEEHLISYDISV*YIKRTHNTSVTFL 110
V +L+ + +W+ L YD V +I T N FL
Sbjct: 608 FVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 650
>gi|2147954|pir||S68350 pol polyprotein - Tribolium brevicornis retrotransposon Woot
(fragment) >gi|1117948 (U40765) polyprotein [Tribolium
brevicornis]
Length = 203
Score = 32.5 bits (72), Expect = 3.1
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 334 YSIIEK*FYVIYXTIEIFKILFSCVNIIISADNKNLISLVKTHL--QKXXKWEEHLISYD 161
Y+ EK + + F+I I+I D++ L L + L ++ +W L YD
Sbjct: 67 YTTTEKELLGVIFALHKFRIYIQATKIVIRTDHQALRFLGRCRLLSERLTRWTLLLGQYD 126
Query: 160 ISV*YIKRTHNTSVTFLPKY---------FTPEGNIPTLLEY*NGTKLILIRNDMNFH 14
+ +K N + L +Y + E I + E N +++ + D+ H
Sbjct: 127 YEIELVKGKDNVAADILSRYPSDGDASYEYPREQPIVAMFEVHNTPEILQLLRDLKQH 184
>gi|2147955|pir||S68349 pol polyprotein - Tribolium freemani retrotransposon Woot
(fragment) >gi|1117950 (U40764) polyprotein [Tribolium
freemani]
Length = 190
Score = 32.5 bits (72), Expect = 3.1
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 334 YSIIEK*FYVIYXTIEIFKILFSCVNIIISADNKNLISLVKTHL--QKXXKWEEHLISYD 161
Y+ EK + + F+I III D++ L L + L ++ +W L YD
Sbjct: 64 YTTTEKELLGVIFALHKFRIYIQATKIIIRTDHQALKFLSRCRLLSERLTRWTLILGQYD 123
Query: 160 ISV*YIKRTHNTSVTFLPKY---------FTPEGNIPTLLEY*NGTKLILIRNDMNFH 14
+ +K N L +Y + E I + E N +++ + D+ H
Sbjct: 124 YEIELVKGKDNVVADILSRYPSDGEASYEYPREQPIVAMFEVHNTPEILQLMTDLKQH 181
>gi|2791289|emb|CAA04050| (AJ000387) protease [Drosophila melanogaster]
Length = 1217
Score = 31.7 bits (70), Expect = 5.3
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 352 NETVHKYSIIEK*FYVIYXTIEIFKILFSCVNIIISADNKNLISLV--KTHLQKXXKWEE 179
++T YS IEK I ++ F+ V I D+K LI L+ K K +W
Sbjct: 651 SDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVKFTIVTDHKPLIWLMNFKEPNSKIIRWRL 710
Query: 178 HLISYDISV*YIKRTHN 128
L+ Y+ + + K + N
Sbjct: 711 QLMEYNFEIIHKKGSQN 727
>gi|4235644 (AF119040) polyprotein [Lycopersicon esculentum]
Length = 1542
Score = 31.3 bits (69), Expect = 7.0
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 358 KSNETVHKYSIIEK*FYVIYXTIEIFKILFSCVNIIISADN--KNLISLVKTHLQKXXKW 185
K N+ +YS EK + ++++++ ++ DN K K +W
Sbjct: 936 KLNDAEQRYSTHEKEMVAVVHCLQVWRVYLLGTRFVVRTDNVANTFFKTQKKLSPKQARW 995
Query: 184 EEHLISYDISV*YIKRTHN 128
+E L YD + HN
Sbjct: 996 QEFLAEYDFMWEHKPGKHN 1014
>gi|102939|pir||B36329 hypothetical protein 2 - cabbage looper transposon TED (fragment)
Length = 1236
Score = 30.9 bits (68), Expect = 9.2
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 352 NETVHKYSIIEK*FYVIYXTIEIFKILFSCVNIIISADNKNL--ISLVKTHLQKXXKWEE 179
NE+ YS IEK I + F+ I D+K L + +K + +W
Sbjct: 625 NESELNYSTIEKELLAIVWATKYFRPYLFGRKFKILTDHKPLQWMMNLKDPNSRMTRWRL 684
Query: 178 HLISYDISV*YIKRTHNTSVTFLPK 104
L YD SV Y K NT+ L +
Sbjct: 685 RLSEYDFSVVYKKGKSNTNADALSR 709
>gi|1226168 (M32662) ORF B (bases 1850-5560) first start codon at 2306
[Autographa californica nucleopolyhedrovirus]
Length = 1084
Score = 30.9 bits (68), Expect = 9.2
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 352 NETVHKYSIIEK*FYVIYXTIEIFKILFSCVNIIISADNKNL--ISLVKTHLQKXXKWEE 179
NE+ YS IEK I + F+ I D+K L + +K + +W
Sbjct: 473 NESELNYSTIEKELLAIVWATKYFRPYLFGRKFKILTDHKPLQWMMNLKDPNSRMTRWRL 532
Query: 178 HLISYDISV*YIKRTHNTSVTFLPK 104
L YD SV Y K NT+ L +
Sbjct: 533 RLSEYDFSVVYKKGKSNTNADALSR 557
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118616240
Number of Sequences: 369800
Number of extensions: 2171244
Number of successful extensions: 4178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4178
Number of HSP's gapped (non-prelim): 7
length of query: 230
length of database: 113023754
effective HSP length: 53
effective length of query: 177
effective length of database: 93424354
effective search space: 16536110658
effective search space used: 16536110658
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)