BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII-25F
         (491 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2829877 (AC002396) Hypothetical protein [Arabidopsis thaliana]      34  0.67
gi|2688596 (AE001167) B. burgdorferi predicted coding region BB0...    31  4.4


>gi|2829877 (AC002396) Hypothetical protein [Arabidopsis thaliana]
           Length = 252
           
 Score = 34.0 bits (76), Expect = 0.67
 Identities = 22/74 (29%), Positives = 35/74 (46%), Gaps = 4/74 (5%)

Query: 215 TNYNILKDTIFNGTKLQYGEVLEILYQFSCRRT----VADSAETLGHSKTTIMSFYKLFR 382
           T+Y I     F+    +YGE+L++L  F  RR     V    E L      ++  + +F 
Sbjct: 122 TSYLIAVKEAFHDEPAKYGEMLKLLKDFKARRVDAACVIARVEELMKDHLNLLFGFCVFL 181

Query: 383 ASLTYFLEKTSEKLGGDG 436
           ++ T F  K   +  GDG
Sbjct: 182 SATTSFTTKLKARFQGDG 199



>gi|2688596 (AE001167) B. burgdorferi predicted coding region BB0662 [Borrelia
           burgdorferi]
           Length = 136
           
 Score = 31.3 bits (69), Expect = 4.4
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 197 GDSQNKTNYNILKDTIFNGTKLQYGEVLEILYQFSCRRTVADSAETLGHSKTTIMSFYKL 376
           G S +    N+LK TIF      Y +V E+ + ++ ++T+   A+T  H K  + +F K 
Sbjct: 18  GSSMDSVKENVLKSTIF------YYDVEEVEFPYARKQTLQFIAKT--HLKYAVFNFDKN 69

Query: 377 FRASLTYFLEK 409
              S T+  +K
Sbjct: 70  KMFSYTFVFDK 80


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89075839
Number of Sequences: 369800
Number of extensions: 1582439
Number of successful extensions: 3361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3361
Number of HSP's gapped (non-prelim): 2
length of query: 163
length of database: 113023754
effective HSP length: 52
effective length of query: 111
effective length of database: 93794154
effective search space: 10411151094
effective search space used: 10411151094
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 66 (30.1 bits)