BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII-18F
(326 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2498886|sp|Q15437|S23B_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 ... 53 5e-07
gi|2137751|pir||I60247 SEC23 protein homolog, 64.7K - mouse >gi|... 52 1e-06
gi|2498884|sp|Q01405|S23A_MOUSE PROTEIN TRANSPORT PROTEIN SEC23 ... 52 1e-06
gi|2498885|sp|Q15436|S23A_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 ... 52 1e-06
gi|3702631|emb|CAA21224| (AL031824) protein transport protein se... 31 4.0
gi|3786491 (AF098993) No definition line found [Caenorhabditis e... 30 5.2
gi|3878421|emb|CAB01883| (Z79601) predicted using Genefinder; si... 29 8.9
gi|134277|sp|P15303|SC23_YEAST PROTEIN TRANSPORT PROTEIN SEC23 >... 29 8.9
>gi|2498886|sp|Q15437|S23B_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM B
>gi|1296666|emb|CAA65775| (X97065) Sec23 protein [Homo
sapiens]
Length = 767
Score = 53.5 bits (126), Expect = 5e-07
Identities = 21/25 (84%), Positives = 24/25 (96%)
Query: 250 MATYQDFIQQNEDRDGVRFSWNLWP 324
MATY +FIQQNE+RDGVRFSWN+WP
Sbjct: 1 MATYLEFIQQNEERDGVRFSWNVWP 25
>gi|2137751|pir||I60247 SEC23 protein homolog, 64.7K - mouse >gi|220494|dbj|BAA02209|
(D12713) MSEC66 [Mus musculus]
Length = 573
Score = 51.9 bits (122), Expect = 1e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 250 MATYQDFIQQNEDRDGVRFSWNLWP 324
M TY +FIQQNE+RDGVRFSWN+WP
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWP 25
>gi|2498884|sp|Q01405|S23A_MOUSE PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM A
Length = 623
Score = 51.9 bits (122), Expect = 1e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 250 MATYQDFIQQNEDRDGVRFSWNLWP 324
M TY +FIQQNE+RDGVRFSWN+WP
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWP 25
>gi|2498885|sp|Q15436|S23A_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM A
>gi|1296664|emb|CAA65774| (X97064) Sec23 protein [Homo
sapiens]
Length = 765
Score = 51.9 bits (122), Expect = 1e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 250 MATYQDFIQQNEDRDGVRFSWNLWP 324
M TY +FIQQNE+RDGVRFSWN+WP
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWP 25
>gi|3702631|emb|CAA21224| (AL031824) protein transport protein sec23 homolog
[Schizosaccharomyces pombe]
Length = 759
Score = 30.5 bits (67), Expect = 4.0
Identities = 10/17 (58%), Positives = 16/17 (93%)
Query: 274 QQNEDRDGVRFSWNLWP 324
++ E+RDGVRF+WN++P
Sbjct: 4 EEIEERDGVRFTWNVFP 20
>gi|3786491 (AF098993) No definition line found [Caenorhabditis elegans]
Length = 421
Score = 30.1 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 50 WRIVRHWFKYLRLILEWEGEEYLYNKQFTTTSEKNYHIDTTXATYPVLLDLRTL 211
WRIV + + + +EWE +Y ++ TT SE I + +P+ +++R L
Sbjct: 277 WRIVIITIRTVSITIEWEMSRQVYIEKLTTNSEN--LISASYDHHPIPVNVRRL 328
>gi|3878421|emb|CAB01883| (Z79601) predicted using Genefinder; similar to serine/threonine
kinase; cDNA EST EMBL:C11835 comes from this gene; cDNA
EST EMBL:C10260 comes from this gene; cDNA EST yk409b3.3
comes from this gene; cDNA EST yk409b3.5 comes fr...
Length = 693
Score = 29.3 bits (64), Expect = 8.9
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 74 KYLRLILEWEGEEYLYNKQFTTTSEKNYHIDTTXATYPVLLDLRTLTLVY 223
+YLRLI E E EE +KQF+ TS H++ A + V ++ + ++Y
Sbjct: 212 EYLRLIQELEEEEK--SKQFSATSSSAPHVNPYSAQHLVNGEIIGIFVIY 259
>gi|134277|sp|P15303|SC23_YEAST PROTEIN TRANSPORT PROTEIN SEC23 >gi|73083|pir||BVBY23 protein
transport protein SEC23 - yeast (Saccharomyces
cerevisiae) >gi|4443|emb|CAA33501| (X15474) SEC23 gene
product (AA 1 - 768) [Saccharomyces cerevisiae]
>gi|786326 (U25842) Protein transport protein Sec23p
(Swiss Prot. accession number P15303) [Saccharomyces
cerevisiae]
Length = 768
Score = 29.3 bits (64), Expect = 8.9
Identities = 10/17 (58%), Positives = 15/17 (87%)
Query: 274 QQNEDRDGVRFSWNLWP 324
+ NED +GVRF+WN++P
Sbjct: 4 ETNEDINGVRFTWNVFP 20
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66382891
Number of Sequences: 368476
Number of extensions: 1166892
Number of successful extensions: 2252
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2246
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 112640273
effective HSP length: 50
effective length of query: 58
effective length of database: 94216473
effective search space: 5464555434
effective search space used: 5464555434
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)