BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII-14R
(568 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
368,476 sequences; 112,640,273 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2394423 (AF024492) No definition line found [Caenorhabditis e... 35 0.36
gi|2394424 (AF024492) No definition line found [Caenorhabditis e... 35 0.47
gi|1401206 (U58510) pre-mRNA splicing factor PRP 6 homolog [Chlo... 34 0.80
gi|3900917|emb|CAA07301| (AJ006877) RepA2 protein [Buchnera aphi... 33 1.8
gi|2262222 (U96636) E6-AP ubiquitin protein ligase [Mus musculus] 31 7.0
gi|627427|pir||A38920 E6-associated protein - human (fragment) >... 31 7.0
gi|140550|sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF ... 31 7.0
gi|631383|pir||S40465 sperm protein PH-20 - human >gi|459387|bbs... 31 7.0
gi|585673|sp|P38567|HYA1_HUMAN HYALURONIDASE PRECURSOR (SPERM SU... 31 7.0
gi|3421153|emb|CAA04535| (AJ001108) E6-AP ubiquitin-protein liga... 31 7.0
gi|4033780|sp|Q05086|UE3A_HUMAN UBIQUITIN-PROTEIN LIGASE E3A (ON... 31 7.0
gi|1843535 (U82122) E6-AP ubiquitin-protein ligase [Mus musculus] 31 7.0
gi|1872514 (U84404) E6-associated protein E6-AP/ubiquitin-protei... 31 7.0
gi|3978458 (AF082835) E6-AP ubiquitin protein ligase [Mus spretus] 31 7.0
gi|1550713|emb|CAB02326| (Z80225) hypothetical protein Rv2672 [M... 31 9.1
>gi|2394423 (AF024492) No definition line found [Caenorhabditis elegans]
Length = 848
Score = 35.2 bits (79), Expect = 0.36
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 137 IKDRFNFQKRYIKETIMIKTNVIDRLELISLMRNSQVFFDYLV--------DLGILKNFE 292
++D F + R + I ++ D LEL+S + Y+ DLG + NFE
Sbjct: 508 VRDEFYRELRARRFPIDLQIKCADELELLSSFIPLPIVNLYIRLASESIYRDLGKIGNFE 567
Query: 293 KCSKCKKVLXLMINEDIYKWLWKCPNSRC 379
KC KCK V ++ +E + K K N C
Sbjct: 568 KCPKCKSV--VLFDEIVEKNEKKTQNRSC 594
>gi|2394424 (AF024492) No definition line found [Caenorhabditis elegans]
Length = 918
Score = 34.8 bits (78), Expect = 0.47
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 137 IKDRFNFQKRYIKETIMIKTNVIDRLELISLMRNSQVFFDYL--------VDLGILKNFE 292
+KD F + R + I ++ +D LEL+S + Y+ DLG L +FE
Sbjct: 575 LKDEFYREFRARRLPIDLQIKAVDELELLSTFIPLPIVNLYIRMVSETTYQDLGALGSFE 634
Query: 293 KCSKCKKVL 319
KC KCK +
Sbjct: 635 KCPKCKSAV 643
>gi|1401206 (U58510) pre-mRNA splicing factor PRP 6 homolog [Chlorarachnion
CCMP621]
Length = 686
Score = 34.0 bits (76), Expect = 0.80
Identities = 29/77 (37%), Positives = 39/77 (49%), Gaps = 1/77 (1%)
Query: 212 LELISLMRNSQVF-FDYLVDLGILKNFEKCSKCKKVLXLMINEDIYKWLWKCPNSRCTNT 388
L + SL R Q F +L L I KN K +KC M++ I K L KCP+S
Sbjct: 511 LIIASLKRRYQSLEFLWLYYLAIFKN--KFNKC-----FMLSHLITKALKKCPSSTLLWM 563
Query: 389 HFLLEKKSFFYGLKTFLS 442
FL +K+FF + FL+
Sbjct: 564 EFLSHRKNFFEKVTLFLA 581
>gi|3900917|emb|CAA07301| (AJ006877) RepA2 protein [Buchnera aphidicola]
Length = 251
Score = 32.8 bits (73), Expect = 1.8
Identities = 22/83 (26%), Positives = 45/83 (53%), Gaps = 7/83 (8%)
Query: 221 ISLMRNSQVFFDYLVDLGILKNFEKCSKCKKVLXLMINEDIYKWLWKCPN-------SRC 379
IS+ R S++ +++ +G++K CKK+ ++IN +I+K ++ P S+
Sbjct: 113 ISITRASRLISEFMEPMGLIK-------CKKIKNVLINNNIHKKIFLTPMFFMLLNISQS 165
Query: 380 TNTHFLLEKKSFFYGLKTFLSKIFLIIYDI 469
T + + +K F KIF+ + +I
Sbjct: 166 TINYHIYKKIRLFKNSNMKEKKIFISLEEI 195
>gi|2262222 (U96636) E6-AP ubiquitin protein ligase [Mus musculus]
Length = 869
Score = 30.9 bits (68), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 318 NTFLHLEHFSKFFKIPRSTK*SKKTCEFLINEINSNLSMTF 196
N L ++ FFK+ K S TC F++N + NL + +
Sbjct: 450 NDVLEMDKDYTFFKVETENKGSFMTCPFILNAVTKNLGLYY 490
>gi|627427|pir||A38920 E6-associated protein - human (fragment) >gi|178745 (L07557)
oncogenic protein-associated protein [Homo sapiens]
Length = 874
Score = 30.9 bits (68), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 318 NTFLHLEHFSKFFKIPRSTK*SKKTCEFLINEINSNLSMTF 196
N L ++ FFK+ K S TC F++N + NL + +
Sbjct: 454 NEVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYY 494
>gi|140550|sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF 2136) >gi|81341|pir||A05037
hypothetical protein 2136 - liverwort (Marchantia
polymorpha) chloroplast >gi|11665|emb|CAA28078| (X04465)
ORF2136 [Marchantia polymorpha]
Length = 2136
Score = 30.9 bits (68), Expect = 7.0
Identities = 34/108 (31%), Positives = 53/108 (48%), Gaps = 8/108 (7%)
Query: 122 LLY*WIKDRFNFQK-RYIKETIMIKTNVIDRLEL--ISLMRNSQVFFDYLVDLGILKNFE 292
LL ++KD+ NF IK I K N+ + +L + L++NS FFD + + LK E
Sbjct: 915 LLKIFLKDKRNFLLINEIKSFIEKKNNLFIKSQLSNVLLVKNSYKFFDNIFNFHFLKQKE 974
Query: 293 KCSKCKKVLXLMINEDIY--KWLWK---CPNSRCTNTHFLLEKKSFFYGLKTFLSK 445
K + +++N Y K L K N N++ K F + L L+K
Sbjct: 975 ------KNIEIILNNQNYFEKSLLKKTYLKNLNLNNSYSKFSYKIFIFQLLNILNK 1024
>gi|631383|pir||S40465 sperm protein PH-20 - human >gi|459387|bbs|141772 (S67798) PH-20
[human, testis, Peptide, 509 aa] [Homo sapiens]
Length = 509
Score = 30.9 bits (68), Expect = 7.0
Identities = 16/52 (30%), Positives = 30/52 (56%)
Query: 308 YI*NIFQNFLKYRDLPNSQKKLASFSSTRLILTCR*HSFLS*WSLLYTFFES 153
Y+ N + ++ +P+++ L F+ TR++ T + FLS L+YTF E+
Sbjct: 277 YVRNRVREAIRVSKIPDAKSPLPVFAYTRIVFTDQVLKFLSQDELVYTFGET 328
>gi|585673|sp|P38567|HYA1_HUMAN HYALURONIDASE PRECURSOR (SPERM SURFACE PROTEIN PH-20) (SPERM
ADHESION MOLECULE 1) >gi|542972|pir||A48795 sperm
surface protein PH-20 - human >gi|1480101|emb|CAA59086|
(X84347) sperm adhesion molecule gene SPAM1 [Homo
sapiens] >gi|3135288 (AC004690) sperm adhesion molecule
1 [Homo sapiens]
Length = 509
Score = 30.9 bits (68), Expect = 7.0
Identities = 16/52 (30%), Positives = 30/52 (56%)
Query: 308 YI*NIFQNFLKYRDLPNSQKKLASFSSTRLILTCR*HSFLS*WSLLYTFFES 153
Y+ N + ++ +P+++ L F+ TR++ T + FLS L+YTF E+
Sbjct: 277 YVRNRVREAIRVSKIPDAKSPLPVFAYTRIVFTDQVLKFLSQDELVYTFGET 328
>gi|3421153|emb|CAA04535| (AJ001108) E6-AP ubiquitin-protein ligase [Homo sapiens]
Length = 415
Score = 30.9 bits (68), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 318 NTFLHLEHFSKFFKIPRSTK*SKKTCEFLINEINSNLSMTF 196
N L ++ FFK+ K S TC F++N + NL + +
Sbjct: 331 NEVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYY 371
>gi|4033780|sp|Q05086|UE3A_HUMAN UBIQUITIN-PROTEIN LIGASE E3A (ONCOGENIC PROTEIN-ASSOCIATED PROTEIN
E6-AP) >gi|1495430|emb|CAA66655| (X98032) isoform I
[Homo sapiens] >gi|1495432|emb|CAA66654| (X98031)
isoform II [Homo sapiens] >gi|1495434|emb|CAA66656|
(X98033) isoform III [Homo sapiens]
>gi|1495436|emb|CAA66653| (X98021) E6-AP [Homo sapiens]
>gi|4507799|ref|NP_000453.1|pUBE3A| ubiquitin protein
ligase E3A (human papilloma virus E6-associated protein)
Length = 852
Score = 30.9 bits (68), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 318 NTFLHLEHFSKFFKIPRSTK*SKKTCEFLINEINSNLSMTF 196
N L ++ FFK+ K S TC F++N + NL + +
Sbjct: 432 NEVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYY 472
>gi|1843535 (U82122) E6-AP ubiquitin-protein ligase [Mus musculus]
Length = 849
Score = 30.9 bits (68), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 318 NTFLHLEHFSKFFKIPRSTK*SKKTCEFLINEINSNLSMTF 196
N L ++ FFK+ K S TC F++N + NL + +
Sbjct: 429 NDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYY 469
>gi|1872514 (U84404) E6-associated protein E6-AP/ubiquitin-protein ligase [Homo
sapiens] >gi|2361031 (AF016708) E6-AP ubiquitin-protein
ligase [Homo sapiens]
Length = 852
Score = 30.9 bits (68), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 318 NTFLHLEHFSKFFKIPRSTK*SKKTCEFLINEINSNLSMTF 196
N L ++ FFK+ K S TC F++N + NL + +
Sbjct: 432 NEVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYY 472
>gi|3978458 (AF082835) E6-AP ubiquitin protein ligase [Mus spretus]
Length = 849
Score = 30.9 bits (68), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 318 NTFLHLEHFSKFFKIPRSTK*SKKTCEFLINEINSNLSMTF 196
N L ++ FFK+ K S TC F++N + NL + +
Sbjct: 429 NDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYY 469
>gi|1550713|emb|CAB02326| (Z80225) hypothetical protein Rv2672 [Mycobacterium tuberculosis]
Length = 528
Score = 30.5 bits (67), Expect = 9.1
Identities = 13/41 (31%), Positives = 24/41 (57%)
Query: 124 IVLMDKRSF*LSKKVYKRDHYDKNECHRQVRINLVDEKLAS 246
IV +D+R +S + RDH+D++E Q + D+ +A+
Sbjct: 163 IVAVDRRGMGMSSPIDCRDHFDRDEMRDQAQFQAGDDPVAN 203
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 12, 1999 12:54 PM
Number of letters in database: 112,640,273
Number of sequences in database: 368,476
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83253811
Number of Sequences: 368476
Number of extensions: 1397780
Number of successful extensions: 3436
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3423
Number of HSP's gapped (non-prelim): 16
length of query: 189
length of database: 112640273
effective HSP length: 53
effective length of query: 135
effective length of database: 93111045
effective search space: 12569991075
effective search space used: 12569991075
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)