BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11-22R
(327 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3122634|sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 153 5e-37
gi|2492523|sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A... 150 2e-36
gi|1174612|sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT ... 150 2e-36
gi|263098|bbs|121995 Tat binding protein 1, TBP-1=transcriptiona... 150 2e-36
gi|4506211|oth|NP_002795|PPSMC3 proteasome (prosome, macropain) ... 150 2e-36
gi|3510277|dbj|BAA32559| (D49686) Tat binding protein-1 [Mus mus... 150 2e-36
gi|3122633|sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 150 4e-36
gi|1710984 (U77918) spermatogenic cell/sperm-associated Tat-bind... 150 4e-36
gi|1174613|sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT ... 148 1e-35
gi|1729860|sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT ... 148 2e-35
gi|464859|sp|P33297|PRSA_YEAST 26S PROTEASE REGULATORY SUBUNIT 6... 148 2e-35
gi|3024434|sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT ... 148 2e-35
gi|3024431|sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT ... 146 3e-35
gi|3193161 (AF067618) contains similarity to the AAA family of A... 146 5e-35
gi|3024433|sp|O14126|PRSA_SCHPO PROBABLE 26S PROTEASE REGULATORY... 145 8e-35
gi|4574740|gb|AAD24194|AF134402_1 (AF134402) Tat-binding protein... 142 9e-34
gi|345717|pir||A44468 probable ATP-dependent proteinase (EC 3.4.... 131 2e-30
gi|1346811|sp|P49014|PRS4_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 131 2e-30
gi|4506207|oth|NP_002793|PPSMC1 proteasome (prosome, macropain) ... 131 2e-30
gi|1346810|sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT ... 130 3e-30
gi|2492516|sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT ... 130 3e-30
gi|3122624|sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY... 130 4e-30
gi|1172635|sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT ... 129 7e-30
gi|4580460|gb|AAD24384|AC006081_6 (AC006081) putative 26S Protea... 129 9e-30
gi|1170767|sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT ... 126 6e-29
gi|730904|sp|P40327|PRS4_YEAST 26S PROTEASE REGULATORY SUBUNIT 4... 125 7e-29
gi|3979998|emb|CAB11558| (Z98866) similar to ATPases associated ... 124 2e-28
gi|1709799|sp|P54814|PRS8_MANSE 26S PROTEASE REGULATORY SUBUNIT ... 124 2e-28
gi|3122626|sp|O18413|PRS8_DROME 26S PROTEASE REGULATORY SUBUNIT ... 124 2e-28
gi|2815905 (AF043734) Pros45 proteosome subunit homolog [Drosoph... 124 2e-28
gi|1825624 (U88170) strong similarity to 26S protease regulatory... 124 2e-28
gi|557599 (L17040) ATPase [Saccharomyces cerevisiae] 123 3e-28
gi|3790757 (AF099922) similar to the AAA family of ATPases; most... 123 4e-28
gi|228885|prf||1813279A SUG1 gene [Saccharomyces cerevisiae] 123 5e-28
gi|1709801|sp|Q01939|PRS8_YEAST 26S PROTEASE REGULATORY SUBUNIT ... 123 5e-28
gi|1195528|bbs|172814 26S protease subunit S8=SUG1 homolog [huma... 123 5e-28
gi|3450955 (AF020736) ATPase homolog [Homo sapiens] 122 6e-28
gi|1709797|sp|P54775|PRS6_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 122 6e-28
gi|1172637|sp|P43686|PRS6_HUMAN 26S PROTEASE REGULATORY SUBUNIT ... 122 6e-28
gi|2791680 (AF038965) 26S proteasome ATPase subunit [Homo sapien... 122 6e-28
gi|2492517|sp|Q63570|PRS6_RAT 26S PROTEASE REGULATORY SUBUNIT 6B... 122 6e-28
gi|263099|bbs|121996 Tat binding protein 7, TBP-7=transcriptiona... 122 6e-28
gi|464863|sp|P34124|PRS8_DICDI 26S PROTEASE REGULATORY SUBUNIT 8... 122 1e-27
gi|1172636|sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY... 121 1e-27
gi|2492521|sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT ... 121 1e-27
gi|1172638|sp|P46507|PRS6_MANSE 26S PROTEASE REGULATORY SUBUNIT ... 121 2e-27
gi|1262435|emb|CAA61864| (X89719) put. 26S protease subunit [Sus... 120 2e-27
gi|2564007|dbj|BAA22935| (AB000493) proteasome p45/SUG [Rattus n... 120 2e-27
gi|2661071 (AF035309) similar to 26S proteasome subunit p45 [Hom... 120 2e-27
gi|1346812|sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT ... 120 2e-27
gi|1709800|sp|P52915|PRS8_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 120 2e-27
gi|3122632|sp|O28303|PRS1_ARCFU PUTATIVE 26S PROTEASE REGULATORY... 120 4e-27
gi|464860|sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6... 120 4e-27
gi|1709798|sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT ... 118 1e-26
gi|1078797|pir||S51042 tat-binding protein homolog - Plasmodium ... 118 1e-26
gi|3024439|sp|P78578|PRS6_ASPNG 26S PROTEASE REGULATORY SUBUNIT ... 118 2e-26
gi|547935|sp|P36612|PRS4_SCHPO 26S PROTEASE REGULATORY SUBUNIT 4... 117 3e-26
gi|3041724|sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 116 6e-26
gi|807211|bbs|160278 Tat-binding protein alpha, DdTBP alpha=Tat-... 115 8e-26
gi|3687465|emb|CAA21189| (AL031798) 26s protease regulatory subu... 115 1e-25
gi|2492520|sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY... 115 1e-25
gi|4506209|oth|NP_002794|PPSMC2 proteasome (prosome, macropain) ... 115 1e-25
gi|1172640|sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 115 1e-25
gi|3914449|sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT ... 115 1e-25
gi|2492519|sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT ... 115 1e-25
gi|4506213|oth|NP_002796|PPSMC5 proteasome (prosome, macropain) ... 115 1e-25
gi|543291|pir||S39349 MSS1 protein homolog - mouse 114 2e-25
gi|2492518|sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 ... 114 2e-25
gi|2506089|sp|P46471|PRS7_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 114 2e-25
gi|464861|sp|P33298|PRS6_YEAST 26S PROTEASE REGULATORY SUBUNIT 6... 113 4e-25
gi|2133217|pir||S69678 YTA2 protein - yeast (Saccharomyces cerev... 113 4e-25
gi|3122631|sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY... 112 9e-25
gi|464862|sp|P33299|PRS7_YEAST 26S PROTEASE REGULATORY SUBUNIT 7... 112 9e-25
gi|2492524|sp|Q58576|PRS1_METJA PUTATIVE 26S PROTEASE REGULATORY... 111 1e-24
gi|3256587|dbj|BAA29270| (AP000001) 399aa long hypothetical 26S ... 109 8e-24
gi|2853099|emb|CAA16915| (AL021767) 26s protease regulatory subu... 108 1e-23
gi|3122625|sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY... 106 5e-23
gi|2960216|emb|CAA11285| (AJ223384) 26S proteasome regulatory AT... 105 9e-23
gi|1709804|sp|P49719|PRSX_SPETR 26S PROTEASE REGULATORY SUBUNIT ... 103 4e-22
gi|4506215|oth|NP_002797|PPSMC6 proteasome (prosome, macropain) ... 103 4e-22
gi|3135751|emb|CAA06853| (AJ006095) 26S protease regulatory subu... 102 6e-22
gi|1147800 (U43720) Sug2p [Saccharomyces cerevisiae] 96 6e-20
gi|2506090|sp|P53549|SUG2_YEAST PROBABLE 26S PROTEASE SUBUNIT SU... 96 6e-20
gi|2982331 (AF051251) TAT-binding protein homolog [Picea mariana] 92 2e-18
gi|3603077|gb|AAC35738| (AF041468) hypothetical chloroplast RF25... 87 5e-17
gi|3122118|sp|P96942|FTSH_MYCTU CELL DIVISION PROTEIN FTSH HOMOL... 85 1e-16
gi|2465738 (AF022186) cell division protein [Cyanidium caldarium] 85 1e-16
gi|3097225|emb|CAA18796| (AL023093) cell division protein FtsH [... 85 2e-16
gi|1169754|sp|P46469|FTSH_LACLA CELL DIVISION PROTEIN FTSH HOMOL... 85 2e-16
gi|3426264 (AF037269) cell division protein [Mycobacterium smegm... 85 2e-16
gi|3808101|emb|CAA09935| (AJ012165) chloroplast protease [Capsic... 85 2e-16
gi|4325041|gb|AAD17230| (AF117339) FtsH-like protein Pftf precur... 85 2e-16
gi|3323067 (AE001247) cell division protein (ftsH) [Treponema pa... 84 3e-16
gi|3201633 (AC004669) putative cell division protein [Arabidopsi... 84 3e-16
gi|2492510|sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 84 3e-16
gi|3122116|sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOL... 84 3e-16
gi|2492511|sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 83 4e-16
gi|1706926|sp|P51327|FTSH_PORPU CELL DIVISION PROTEIN FTSH HOMOL... 83 6e-16
gi|3820564 (AF080002) ATP-dependent zinc metallopeptidase FtsH [... 83 6e-16
gi|1706925|sp|P49825|FTSH_ODOSI CELL DIVISION PROTEIN FTSH HOMOL... 83 8e-16
gi|3122117|sp|P94304|FTSH_BACFI CELL DIVISION PROTEIN FTSH HOMOL... 83 8e-16
gi|4154882 (AE001471) ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 83 8e-16
gi|2983448 (AE000714) cell division protein FtsH [Aquifex aeolicus] 82 1e-15
gi|2492508|sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOL... 82 1e-15
gi|120570|sp|P28691|FTSH_ECOLI CELL DIVISION PROTEIN FTSH >gi|42... 82 2e-15
gi|3128469 (AF061748) cell division protein FtsH [Streptococcus ... 82 2e-15
gi|746401 (U01376) ATP-binding protein [Escherichia coli] 82 2e-15
gi|585159|sp|P37476|FTSH_BACSU CELL DIVISION PROTEIN FTSH HOMOLO... 81 2e-15
gi|1168858|sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47... 80 4e-15
gi|2199518 (U97567) FtsH [Helicobacter pylori] 80 4e-15
gi|541748|emb|CAA54091| (X76643) Afg3p [Saccharomyces cerevisiae] 80 4e-15
gi|2062173 (AC001645) cell division protein FtsH isolog [Arabido... 80 4e-15
gi|2492513|sp|P72991|FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 80 5e-15
gi|3329313 (AE001357) ATP-dependent zinc protease [Chlamydia tra... 80 7e-15
gi|4377327|gb|AAD19135| (AE001680) ATP-dependent zinc protease [... 80 7e-15
gi|1589774 (U59452) HpFtsH [Helicobacter pylori] 80 7e-15
gi|3116137|emb|CAA18886| (AL023288) AAA family ATPase protein [S... 80 7e-15
gi|1881481|emb|CAB05953| (Z83338) FtsH [Mycobacterium tuberculosis] 79 9e-15
gi|3258278|dbj|BAA30961| (AP000007) 798aa long hypothetical tran... 79 9e-15
gi|730715|sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S4385... 79 1e-14
gi|2492509|sp|P75120|FTSH_MYCPN CELL DIVISION PROTEIN FTSH HOMOL... 79 1e-14
gi|508233 (U09358) Rca1p [Saccharomyces cerevisiae] 79 1e-14
gi|531754|emb|CAA56955| (X81068) probable mitochondrial protein ... 79 1e-14
gi|1710045|sp|P40341|RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN ... 79 1e-14
gi|1346047|sp|P47695|FTSH_MYCGE CELL DIVISION PROTEIN FTSH HOMOL... 79 1e-14
gi|4505483|oth|NP_002524|PNVL nuclear VCP-like >gi|2406580 (U787... 78 2e-14
gi|3721926|dbj|BAA33755| (AB017480) chloroplast FtsH protease [N... 78 2e-14
gi|2406565 (U68140) nuclear VCP-like protein NVLp.2 [Homo sapiens] 78 2e-14
gi|3878262|emb|CAB00040| (Z75712) similar to AAA ATPase; cDNA ES... 78 2e-14
gi|2492507|sp|P71377|FTH1_HAEIN CELL DIVISION PROTEIN FTSH HOMOL... 78 2e-14
gi|728820|sp|P39925|AFG3_YEAST AFG3 PROTEIN (TAT-BINDING HOMOLOG... 78 2e-14
gi|2492512|sp|P73437|FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 78 2e-14
gi|2262118|gb|AAB63626| (AC002343) cell division protein isolog ... 78 2e-14
gi|3461848 (AC005315) putative ATPase [Arabidopsis thaliana] 78 3e-14
gi|2649281 (AE001014) cell division control protein 48, AAA fami... 78 3e-14
gi|2622767 (AE000923) cell division control protein Cdc48 [Metha... 77 3e-14
gi|3257095|dbj|BAA29778| (AP000003) 840aa long hypothetical cell... 77 3e-14
gi|2688712 (AE001177) cell division protein (ftsH) [Borrelia bur... 76 6e-14
gi|1916752 (U78072) VCP-like ATPase [Thermoplasma acidophilum] 76 6e-14
gi|4105619 (AF049099) SPAF [Mus musculus] 76 6e-14
gi|3218522|emb|CAA19646| (AL023874) 1-evidence=predicted by cont... 76 8e-14
gi|3860613|emb|CAA14514| (AJ235270) CELL DIVISION PROTEIN FTSH ... 76 8e-14
gi|1770214|emb|CAA67594| (X99207) smallminded [Drosophila melano... 75 1e-13
gi|2492514|sp|Q39102|FTSH_ARATH CELL DIVISION PROTEIN FTSH HOMOL... 75 1e-13
gi|1066063 (U39304) P26s4 [Cricetinae gen. sp.] 75 1e-13
gi|2077957|emb|CAA73318| (Y12780) ATPase [Arabidopsis thaliana] 75 2e-13
gi|2648442 (AE000959) cell division control protein 48, AAA fami... 75 2e-13
gi|2492504|sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 H... 74 3e-13
gi|2492515|sp|Q39444|FTSH_CAPAN CELL DIVISION PROTEIN FTSH HOMOL... 74 4e-13
gi|2492506|sp|Q13608|PEX6_HUMAN PEROXISOME ASSEMBLY FACTOR-2 (PA... 73 5e-13
gi|4505729|oth|NP_000278|PPEX6 peroxisomal biogenesis factor 6 >... 73 5e-13
gi|1709557|sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-... 73 5e-13
gi|2911135|dbj|BAA24931| (D89660) peroxisome assembly factor-2 [... 73 5e-13
gi|1705678|sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 H... 73 7e-13
gi|4507173|oth|NP_003110|PSPG7 spastic paraplegia 7, paraplegin ... 73 7e-13
gi|416590|sp|P32794|AFG2_YEAST AFG2 PROTEIN >gi|481664|pir||S391... 73 7e-13
gi|2467272|emb|CAB16902| (Z99759) hypothetical protein [Schizosa... 73 7e-13
gi|642339|emb|CAA58229| (X83226) peroxisome biogenesis invlved p... 72 1e-12
gi|3219842|sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|2370473|e... 72 1e-12
gi|464348|sp|P33760|PEX6_YEAST PEROXISOME BIOSYNTHESIS PROTEIN P... 72 1e-12
gi|3136033|emb|CAA19064| (AL023590) putative metallopeptidase [S... 72 1e-12
gi|4505725|oth|NP_000457|PPEX1 peroxisome biogenesis factor 1 >g... 71 3e-12
gi|3169060|emb|CAA19256| (AL023704) putative peroxisome biosynth... 71 3e-12
gi|1669371 (AC000064) ATPase; strong similarity to peroxisome bi... 71 3e-12
gi|2492505|sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 H... 71 3e-12
gi|3191980|emb|CAA19379| (AL023797) cell division protein FtsH h... 70 6e-12
gi|1168856|sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATP... 69 7e-12
gi|1174638|sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICUL... 69 1e-11
gi|3413700 (AC004747) putative YME1 protein [Arabidopsis thaliana] 69 1e-11
gi|1817701|emb|CAB06575| (Z84724) hypothetical protein Rv0435c [... 69 1e-11
gi|2492526|sp|Q07844|YL34_YEAST HYPOTHETICAL 93.1 KD PROTEIN YLL... 69 1e-11
gi|539079|pir||A48667 peroxisomal assembly protein 5 - yeast (Pi... 68 2e-11
gi|464347|sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN P... 68 2e-11
gi|1174636|sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM... 68 2e-11
gi|400712|sp|Q01853|TERA_MOUSE TRANSITIONAL ENDOPLASMIC RETICULU... 68 2e-11
gi|2144498|pir||VPPG transitional endoplasmic reticulum ATPase -... 68 2e-11
gi|1174637|sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM... 68 2e-11
gi|2984586 (AC004472) TERA_HUMAN [Homo sapiens] 68 2e-11
gi|548460|sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN P... 68 2e-11
gi|1705677|sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 H... 68 2e-11
gi|2853003|gb|AAC02215| (AF044488) valosin-containing protein ho... 67 4e-11
gi|1729898|sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICUL... 67 4e-11
gi|3874892|emb|CAA88105| (Z48045) similar to P97 protein; cDNA E... 67 4e-11
gi|3337433 (AF047037) transitional endoplasmic reticulum ATPase ... 66 6e-11
gi|1172019|sp|P46463|PEX1_PICPA PEROXISOME BIOSYNTHESIS PROTEIN ... 66 6e-11
gi|1705679|sp|P25694|CC48_YEAST CELL DIVISION CONTROL PROTEIN 48... 66 9e-11
gi|2291210 (AF016424) contains similarity to the AAA family of A... 66 9e-11
gi|2330848|emb|CAB11085| (Z98533) transitional endoplasmic retic... 66 1e-10
gi|4154795 (AE001464) ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 65 1e-10
gi|1730618|sp|P54813|YMEH_CAEEL YME1 PROTEIN HOMOLOG >gi|3878638... 65 1e-10
gi|2313382|gb|AAD07354| (AE000547) cell division protein (ftsH) ... 65 2e-10
gi|530428|emb|CAA83750| (Z33086) cell Division Protein FTSH (fam... 65 2e-10
gi|418575|sp|P32795|YME1_YEAST YME1 PROTEIN (TAT-BINDING HOMOLOG... 65 2e-10
gi|531752|emb|CAA56954| (X81067) probable mitochondrial protein;... 65 2e-10
gi|684978|dbj|BAA03839| (D16332) OSD1 gene product [Saccharomyce... 65 2e-10
gi|172098 (M58676) ATPase Pas1p [Saccharomyces cerevisiae] 64 3e-10
gi|548458|sp|P24004|PEX1_YEAST PEROXISOME BIOSYNTHESIS PROTEIN P... 64 3e-10
gi|4406773|gb|AAD20084| (AC006836) putative cell division contro... 64 3e-10
gi|1079323|pir||S52928 XSUG1 protein - African clawed frog 64 3e-10
gi|1729896|sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICUL... 64 4e-10
gi|1778842 (U83085) cell division cycle protein 48 [Dictyosteliu... 63 6e-10
gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory s... 63 7e-10
gi|3915816|sp|Q58889|PRS2_METJA PUTATIVE 26S PROTEASE REGULATORY... 63 7e-10
gi|4008355|emb|CAA92596| (Z68297) Similarity to Yeast TAT-bindin... 61 3e-09
gi|1729861|sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 61 3e-09
gi|3874249|emb|CAA94119| (Z70205) Similarity to Yeast peroxisome... 60 5e-09
gi|1272680|emb|CAA56963| (X81072) YTA7 [Saccharomyces cerevisiae] 59 8e-09
gi|1729862|sp|P40340|TBP7_YEAST TAT-BINDING HOMOLOG 7 >gi|213321... 59 8e-09
gi|1173445|sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 D... 59 1e-08
gi|3560170|emb|CAA20682| (AL031525) 26s protease regulatory subu... 59 1e-08
gi|3790601 (AF088800) ARC [Rhodococcus erythropolis] 59 1e-08
gi|1173444|sp|P46467|SKD1_MOUSE SKD1 PROTEIN >gi|1083520|pir||S4... 59 1e-08
gi|3329390 (AF038960) SKD1 homolog [Homo sapiens] 59 1e-08
gi|1168248|sp|P46509|A26A_MYCLE PUTATIVE ATPASE A2126A >gi|21458... 58 2e-08
gi|2253055|emb|CAB10706| (Z97559) hypothetical protein Rv2115c [... 58 2e-08
gi|3676746 (AF086832) ARC [Streptomyces coelicolor] 58 2e-08
gi|1176560|sp|P46508|YME1_SCHMA YME1 PROTEIN HOMOLOG >gi|542453|... 58 2e-08
gi|2291232 (AF016427) similar to the AAA family of ATPases [Caen... 57 4e-08
gi|2388970|emb|CAB11703| (Z98979) tat binding homolog [Schizosac... 57 6e-08
gi|3600100 (AF090430) ATP-dependent metalloprotease FtsH1 [Mus m... 57 6e-08
gi|1176230|sp|P42811|PRS2_METTM PUTATIVE 26S PROTEASE REGULATORY... 57 6e-08
gi|3334301|sp|O27092|PRS2_METTH PUTATIVE 26S PROTEASE REGULATORY... 57 6e-08
gi|4454688|gb|AAD20962| (AF070656) FtsH homolog [Homo sapiens] 57 6e-08
gi|2133218|pir||S61113 YTA6 protein - yeast (Saccharomyces cerev... 56 7e-08
gi|3128218 (AC004077) putative end13 protein [Arabidopsis thaliana] 56 7e-08
gi|730905|sp|P40328|TBP6_YEAST PROBABLE 26S PROTEASE SUBUNIT YTA... 56 7e-08
gi|1706647|sp|P52917|EN13_YEAST END13 PROTEIN >gi|2131247|pir||S... 56 7e-08
gi|1054845|emb|CAA63364| (X92680) allelic to VPS4 [Saccharomyces... 56 7e-08
gi|2257509|dbj|BAA21405| (AB004535) TAT-BINDING HOMOLOG 7. [Schi... 55 1e-07
gi|2649294 (AE001015) cell division control protein, AAA family,... 55 2e-07
gi|462591|sp|P34808|MEI1_CAEEL MEIOTIC SPINDLE FORMATION PROTEIN... 55 2e-07
gi|1078885|pir||S47861 mei-1 protein - Caenorhabditis elegans 55 2e-07
gi|3647351|emb|CAB10575| (Z97348) predicted using hexExon; MAL3P... 54 3e-07
gi|3283072 (AF056022) p60 katanin [Homo sapiens] 53 5e-07
gi|3098603 (AF052191) katanin p60 subunit [Strongylocentrotus pu... 53 6e-07
gi|3860272 (AC005824) putative suppressor protein [Arabidopsis t... 52 1e-06
gi|3257698|dbj|BAA30381| (AP000005) 363aa long hypothetical prot... 52 1e-06
gi|1449179|dbj|BAA13101| (D86506) N-ethylmaleimide sensitive fus... 52 1e-06
gi|731461|sp|P39955|SAP1_YEAST SAP1 PROTEIN >gi|1077655|pir||S50... 51 2e-06
gi|2894288|emb|CAA17029| (AL021837) putative proteome subunit [S... 51 2e-06
gi|467977 (U03985) N-ethylmaleimide-sensitive factor [Homo sapiens] 50 4e-06
gi|1171774|sp|P46460|NSF_MOUSE VESICULAR-FUSION PROTEIN NSF (N-E... 50 4e-06
gi|134267|sp|P18708|NSF_CRIGR VESICULAR-FUSION PROTEIN NSF (N-ET... 50 4e-06
gi|1171773|sp|P46459|NSF_HUMAN VESICULAR-FUSION PROTEIN NSF (N-E... 50 4e-06
gi|90219|pir||S04235 vesicular fusion protein NSF - Chinese hams... 50 4e-06
gi|1173370|sp|P34732|SC18_CANAL VESICULAR-FUSION PROTEIN SEC18 >... 49 9e-06
gi|487062|pir||S37606 SEC18 protein - yeast (Candida albicans) 49 9e-06
gi|4104671 (AF038010) N-ethylmaleimide-sensitive fusion protein ... 49 1e-05
gi|4325346|gb|AAD17345| (AF128393) similar to N-ethylmaleimide s... 49 1e-05
gi|3193292 (AF069298) similar to ATPases associated with various... 48 2e-05
gi|4115900 (AF015488) N-ethylmaleimide sensitive fusion protein ... 48 3e-05
gi|1171772|sp|P46461|NSF1_DROME VESICULAR-FUSION PROTEIN NSF1 (N... 47 4e-05
gi|2879845|emb|CAA76204| (Y16416) putative N-ethylmaleimide sens... 47 5e-05
gi|3878055|emb|CAB09531| (Z96100) Similarity to Drosophila vesic... 46 6e-05
gi|2492503|sp|Q94392|NSFH_CAEEL VESICULAR-FUSION PROTEIN NSF HOM... 46 6e-05
gi|1255387 (U53149) coded for by C. elegans cDNA yk74g12.5; code... 46 8e-05
gi|2650149 (AE001071) AAA superfamily ATPase [Archaeoglobus fulg... 46 8e-05
gi|4455359|emb|CAB36769| (AL035524) putative protein [Arabidopsi... 46 8e-05
gi|924933 (U28836) N-ethylmaleimide sensitive fusion protein-2 [... 46 1e-04
gi|1709351|sp|P54351|NSF2_DROME VESICULAR-FUSION PROTEIN NSF2 (N... 46 1e-04
gi|585965|sp|P18759|SC18_YEAST VESICULAR-FUSION PROTEIN SEC18 >g... 45 1e-04
gi|462627|sp|P28737|MSP1_YEAST MSP1 PROTEIN (TAT-BINDING HOMOLOG... 44 3e-04
gi|2584876 (AF006826) N-ethylmaleimide-sensitive fusion protein ... 44 4e-04
gi|4469019|emb|CAB38280| (AL035602) putative protein [Arabidopsi... 43 5e-04
gi|172563 (M20662) SEC18 gene product [Saccharomyces cerevisiae] 43 0.001
gi|3258279|dbj|BAA30962| (AP000007) 141aa long hypothetical prot... 43 0.001
gi|172564 (M20662) SEC18 gene product short form (5' end could b... 43 0.001
gi|2492527|sp|P55530|Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY ... 42 0.002
gi|3659891 (AF091834) N-ethylmaleimide sensitive factor NSF [Rat... 40 0.006
gi|3377851 (AF076274) contains similarity to ATPases associated ... 40 0.006
gi|1709135|sp|P54815|MSP1_CAEEL MSP1 PROTEIN HOMOLOG >gi|3878242... 39 0.008
gi|3877502|emb|CAA90252| (Z49967) ATP-binding protein (CDC48/PAS... 39 0.010
gi|758793 (U23723) orf300 [Escherichia coli] 38 0.018
gi|2506091|sp|P32839|BCS1_YEAST BCS1 PROTEIN >gi|2131192|pir||S6... 38 0.018
gi|2160153 (AC000375) Similar to Xenopus TER ATPase (gb|X54240).... 37 0.053
gi|687922|bbs|156028 PA700 subunit p56=ATP-dependent 20 S protea... 36 0.069
gi|3602963|gb|AAC35624| (AF041468) hypothetical chloroplast RF46... 36 0.091
gi|1749480|dbj|BAA13798| (D89136) similar to Saccharomyces cerev... 35 0.16
gi|2224422|dbj|BAA57906| (AB001684) cell division protein FtsH [... 34 0.35
gi|3023786|sp|P56369|FTSH_CHLVU CELL DIVISION PROTEIN FTSH HOMOL... 34 0.35
gi|2795916 (AF038195) unknown [Homo sapiens] >gi|3599962 (AF0268... 34 0.46
gi|258018|bbs|116340 (S47190) necessary for expression of ubiqui... 34 0.46
gi|624070 (U42580) contains ATP/GTP-binding site motif A; contai... 33 0.60
gi|3257096|dbj|BAA29779| (AP000003) 146aa long hypothetical prot... 33 0.60
gi|4539301|emb|CAB39604| (AL049480) putative mitochondrial prote... 32 1.4
gi|3877493|emb|CAA88471| (Z48583) similar to ATPases associated ... 32 1.4
gi|1169753|sp|P45219|FTH2_HAEIN CELL DIVISION PROTEIN FTSH HOMOL... 32 1.4
gi|3347992 (AF076598) RcaA [Dictyostelium discoideum] 31 2.3
gi|687933|bbs|156039 PA700 subunit p48=ATP-dependent 20 S protea... 31 3.0
gi|1351773|sp|P49541|YC46_ODOSI HYPOTHETICAL 56.9 KD PROTEIN YCF... 31 4.0
gi|2911393 (AF045927) cell division cycle protein 48 [Hordeum vu... 30 5.2
gi|1001469|dbj|BAA10095| (D63999) cell division cycle protein [S... 30 6.8
gi|3023975|sp|Q44772|HSLU_BORBU HEAT SHOCK PROTEIN HSLU >gi|1165... 30 6.8
gi|1196314 (L76303) heat shock response protein [Borrelia burgdo... 30 6.8
gi|2688171 (AE001137) heat shock protein (hslU) [Borrelia burgdo... 30 6.8
gi|79706|pir||JQ1233 hypothetical 41.8K protein - Synechocystis ... 30 6.8
gi|1001376|dbj|BAA10866| (D64006) ATP-dependent protease ATPase ... 29 9.0
gi|2351824 (U92039) ATP-dependent Clp protease, regulatory subun... 29 9.0
>gi|3122634|sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 6) (TBP-6)
>gi|2648047|emb|CAA71487| (Y10461) TBP6 protein [Xenopus
laevis]
Length = 405
Score = 153 bits (382), Expect = 5e-37
Identities = 79/109 (72%), Positives = 91/109 (83%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 232 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 291
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + M++++ +DILDPALLRSGR+DRKIEF
Sbjct: 292 RTMLELLNQLDGF--QPNMQVKVIAATNRVDILDPALLRSGRLDRKIEF 338
>gi|2492523|sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(SPERMATOGENIC CELL/SPERM-ASSOCIATED TAT-BINDING PROTEIN
HOMOLOG SATA) >gi|1395184|dbj|BAA11939| (D83522)
proteasomal ATPase (rat TBP1) [Rattus norvegicus]
Length = 439
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 308 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
>gi|1174612|sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(PROTEASOME SUBUNIT P50)
Length = 439
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 308 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
>gi|263098|bbs|121995 Tat binding protein 1, TBP-1=transcriptional activator [human,
Peptide, 439 aa]
Length = 439
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 308 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
>gi|4506211|oth|NP_002795|PPSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3
>gi|107855|pir||A34832 Tat-binding protein-1 - human
>gi|338700 (M34079) tat binding protein-1 (tbp-1) [Homo
sapiens]
Length = 404
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 213 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 272
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 273 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 319
>gi|3510277|dbj|BAA32559| (D49686) Tat binding protein-1 [Mus musculus]
Length = 442
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 251 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 310
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 311 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 357
>gi|3122633|sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 10)
(TBP-10) >gi|2648045|emb|CAA71486| (Y10460) TBP10
protein [Xenopus laevis]
Length = 404
Score = 150 bits (374), Expect = 4e-36
Identities = 77/109 (70%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIG KR DS++ GD EVQ
Sbjct: 213 FLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQ 272
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 273 RTMLELLNQLDGF--QPTTQVKVIAATNRVDILDPALLRSGRLDRKIEF 319
>gi|1710984 (U77918) spermatogenic cell/sperm-associated Tat-binding protein
homolog Sata [Rattus norvegicus]
Length = 442
Score = 150 bits (374), Expect = 4e-36
Identities = 77/109 (70%), Positives = 90/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 251 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 310
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQ+DG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 311 RTMLELLNQMDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 357
>gi|1174613|sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|556560|dbj|BAA04614| (D17788)
rice homologue of Tat binding protein [Oryza sativa]
Length = 429
Score = 148 bits (370), Expect = 1e-35
Identities = 78/109 (71%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F+LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 238 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 297
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 298 RTMLELLNQLDGFSSD--ERIKVIAATNRADILDPALMRSGRLDRKIEF 344
>gi|1729860|sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
>gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato >gi|732815|emb|CAA52445| (X74426)
Mg-dependent ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 148 bits (369), Expect = 2e-35
Identities = 78/109 (71%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F+LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 232 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 291
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 292 RTMLELLNQLDGFSSD--DRIKVIAATNRADILDPALMRSGRLDRKIEF 338
>gi|464859|sp|P33297|PRSA_YEAST 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN HOMOLOG 1)
(TBP-1) >gi|626983|pir||S46605 YTA1 protein - yeast
(Saccharomyces cerevisiae) >gi|313878|emb|CAA51971|
(X73569) yeast tat-binding analog [Saccharomyces
cerevisiae] >gi|1050819|emb|CAA62114| (X90518) ORF O3258
[Saccharomyces cerevisiae] >gi|1164962|emb|CAA64037|
(X94335) YOR3258w [Saccharomyces cerevisiae]
>gi|1420311|emb|CAA99315| (Z75025) ORF YOR117w
[Saccharomyces cerevisiae]
Length = 434
Score = 148 bits (369), Expect = 2e-35
Identities = 76/109 (69%), Positives = 90/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLA PQLVQMYIG+GA+LVRD F LAKE P+IIFIDE+DAIGTKR DS+++GD EVQ
Sbjct: 243 FLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQ 302
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ +D+LDPALLRSGR+DRKIEF
Sbjct: 303 RTMLELLNQLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEF 349
>gi|3024434|sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2564337|dbj|BAA22951| (D88663)
Tat binding protein 1 [Brassica rapa]
Length = 424
Score = 148 bits (369), Expect = 2e-35
Identities = 78/109 (71%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F+LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 233 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQ 292
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 293 RTMLELLNQLDGFSSD--ERIKVIAATNRADILDPALMRSGRLDRKIEF 339
>gi|3024431|sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2342675 (AC000106) Similar to
probable Mg-dependent ATPase (pir|S56671). ESTs
gb|T46782,gb|AA04798 come from this gene. [Arabidopsis
thaliana]
Length = 419
Score = 146 bits (366), Expect = 3e-35
Identities = 78/109 (71%), Positives = 88/109 (80%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 228 FLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 287
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 288 RTMLELLNQLDGFSSD--DRIKVIAATNRADILDPALMRSGRLDRKIEF 334
>gi|3193161 (AF067618) contains similarity to the AAA family of ATPases (Pfam;
AAA, score; 259.07); most similar to human probable 26S
protease subunit TBP-1 (SW:P17980) [Caenorhabditis
elegans]
Length = 430
Score = 146 bits (365), Expect = 5e-35
Identities = 77/108 (71%), Positives = 87/108 (80%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE P+IIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 239 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 298
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RTMLELLNQLDG +K+ ID+LDPALLRSGR+DRKIE
Sbjct: 299 RTMLELLNQLDGFQPNDDIKVI--AATNRIDVLDPALLRSGRLDRKIE 344
>gi|3024433|sp|O14126|PRSA_SCHPO PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6A
>gi|2414640|emb|CAB16387| (Z99260) 26s protease
regulatory subunit, yeast tbp1 homolog
[Schizosaccharomyces pombe]
Length = 438
Score = 145 bits (363), Expect = 8e-35
Identities = 75/109 (68%), Positives = 88/109 (79%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLA PQLVQM+IGDGA+LVRD F LAKE P+IIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 247 FLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ +D LDPALLRSGR+DRK+EF
Sbjct: 307 RTMLELLNQLDGFSSD--DRVKVIAATNRVDTLDPALLRSGRLDRKLEF 353
>gi|4574740|gb|AAD24194|AF134402_1 (AF134402) Tat-binding protein-1 [Drosophila melanogaster]
Length = 431
Score = 142 bits (354), Expect = 9e-34
Identities = 77/109 (70%), Positives = 88/109 (80%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE P+IIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 241 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 300
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQL+G S +K+ +DIL PALLRSGR+DRKIEF
Sbjct: 301 RTMLELLNQLNGFSSTADIKVI--AATNRVDIL-PALLRSGRLDRKIEF 346
>gi|345717|pir||A44468 probable ATP-dependent proteinase (EC 3.4.21.-) chain 4 - human
Length = 440
Score = 131 bits (325), Expect = 2e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|1346811|sp|P49014|PRS4_MOUSE 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|1066067 (U39302)
P26s4 [Mus musculus] >gi|1395182|dbj|BAA09341| (D50696)
proteasomal ATPase (S4) [Rattus norvegicus]
Length = 440
Score = 131 bits (325), Expect = 2e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|4506207|oth|NP_002793|PPSMC1 proteasome (prosome, macropain) 26S subunit, ATPase, 1
>gi|1172634|sp|Q03527|PRS4_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 4 (P26S4) >gi|403456 (L02426) 26S protease (S4)
regulatory subunit [Homo sapiens]
Length = 440
Score = 131 bits (325), Expect = 2e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|1346810|sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|1066065 (U39303)
P26s4 [Drosophila melanogaster]
Length = 439
Score = 130 bits (324), Expect = 3e-30
Identities = 65/109 (59%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDA+GTKR DS+ G+ E+Q
Sbjct: 246 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQ 305
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 306 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 352
>gi|2492516|sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|1399943 (U60187) 26S
ATPase complex subunit 4 [Gallus gallus]
Length = 440
Score = 130 bits (324), Expect = 3e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|3122624|sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4 >gi|2315358 (AF016440)
strong similarity to the AAA family of ATPases
[Caenorhabditis elegans]
Length = 443
Score = 130 bits (323), Expect = 4e-30
Identities = 64/109 (58%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG ++VR++F++A+E PSI+FIDEIDA+GTKR DS+ G+ E+Q
Sbjct: 250 FLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQ 309
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 310 RTMLELLNQLDGFDSRGDVKVLM--ATNRIESLDPALIRPGRIDRKIEF 356
>gi|1172635|sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) >gi|556558|dbj|BAA04615| (D17789) rice
homologue of Tat binding protein [Oryza sativa]
Length = 448
Score = 129 bits (321), Expect = 7e-30
Identities = 66/109 (60%), Positives = 84/109 (76%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A E PSI+FIDEIDA+GTKR D+ G+ E+Q
Sbjct: 255 FLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 314
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ L I+ LDPALLR GRIDRKIEF
Sbjct: 315 RTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEF 361
>gi|4580460|gb|AAD24384|AC006081_6 (AC006081) putative 26S Protease Subunit 4 [Arabidopsis thaliana]
Length = 443
Score = 129 bits (320), Expect = 9e-30
Identities = 65/109 (59%), Positives = 85/109 (77%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A + PSI+FIDEIDA+GTKR D++ G+ E+Q
Sbjct: 250 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQ 309
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ L I+ LDPALLR GRIDRKIEF
Sbjct: 310 RTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEF 356
>gi|1170767|sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (LET1 PROTEIN)
>gi|626074|pir||S45176 transcription factor SUG1 homolog
- fission yeast (Schizosaccharomyces pombe) >gi|406051
(U02280) Let1 [Schizosaccharomyces pombe]
>gi|4106689|emb|CAA22628| (AL035065) 26s protease
regulatory subunit 8 homolog [Schizosaccharomyces pombe]
Length = 403
Score = 126 bits (313), Expect = 6e-29
Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSD-RTGDHEV 151
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ RSDS +GD EV
Sbjct: 207 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEV 266
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
QRTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 267 QRTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 314
>gi|730904|sp|P40327|PRS4_YEAST 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING HOMOLOG 5)
>gi|626989|pir||S46613 YTA5 protein - yeast
(Saccharomyces cerevisiae) >gi|531758|emb|CAA56957|
(X81070) probable regulatory subunit of 26S proteasome;
homologue to S4 subunit of human 26S proteasome
[Saccharomyces cerevisiae] >gi|683690|emb|CAA88352|
(Z48432) homolog to S4 subunit of human 26S proteasome
(X81070) [Saccharomyces cerevisiae]
>gi|1430967|emb|CAA98563| (Z74055) ORF YDL007w
[Saccharomyces cerevisiae]
Length = 437
Score = 125 bits (312), Expect = 7e-29
Identities = 65/109 (59%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG RL R +FK+A E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 244 FLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 303
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG R +K+ + I+ LDPAL+R GRIDRKI F
Sbjct: 304 RTMLELLNQLDGFDDRGDVKVIM--ATNKIETLDPALIRPGRIDRKILF 350
>gi|3979998|emb|CAB11558| (Z98866) similar to ATPases associated with various cellular
activities (AAA); cDNA EST yk411g8.5 comes from this
gene; cDNA EST yk361e3.5 comes from this gene; cDNA EST
EMBL:C13357 comes from this gene; cDNA EST EMBL:D74251
co...
Length = 416
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 221 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQ 280
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 281 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 327
>gi|1709799|sp|P54814|PRS8_MANSE 26S PROTEASE REGULATORY SUBUNIT 8 (18-56 PROTEIN) >gi|1167963
(U43728) 18-56 protein [Manduca sexta]
Length = 402
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 83/109 (75%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EVQ
Sbjct: 207 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 266
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 267 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 313
>gi|3122626|sp|O18413|PRS8_DROME 26S PROTEASE REGULATORY SUBUNIT 8 >gi|2245467 (U97538) DUG
[Drosophila melanogaster]
Length = 405
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 83/109 (75%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EVQ
Sbjct: 210 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 316
>gi|2815905 (AF043734) Pros45 proteosome subunit homolog [Drosophila
melanogaster]
Length = 405
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 83/109 (75%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EVQ
Sbjct: 210 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 316
>gi|1825624 (U88170) strong similarity to 26S protease regulatory subnit 4
(P26S4) [Caenorhabditis elegans]
Length = 493
Score = 124 bits (308), Expect = 2e-28
Identities = 65/108 (60%), Positives = 80/108 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++ G LVQ G+GARLVR +F++AKE PSI+FIDEIDA+GTKR D+ G+ EVQ
Sbjct: 300 FIRATGSDLVQKQSGEGARLVRQIFQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQ 359
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+LELLNQLDG SR +K+ + ID LDPAL+R GRIDRKIE
Sbjct: 360 RTLLELLNQLDGFESRGDVKIIM--ATNRIDSLDPALIRPGRIDRKIE 405
>gi|557599 (L17040) ATPase [Saccharomyces cerevisiae]
Length = 437
Score = 123 bits (307), Expect = 3e-28
Identities = 64/109 (58%), Positives = 80/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG RL R +FK+A E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 244 FLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 303
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG R +K+ + I+ LDPAL+R GRIDR I F
Sbjct: 304 RTMLELLNQLDGFDDRGDVKVIM--ATNKIETLDPALIRPGRIDRNILF 350
>gi|3790757 (AF099922) similar to the AAA family of ATPases; most similar to
26S protease regulatory subunit 8 [Caenorhabditis
elegans]
Length = 443
Score = 123 bits (306), Expect = 4e-28
Identities = 63/109 (57%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + R GD EVQ
Sbjct: 248 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 308 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 354
>gi|228885|prf||1813279A SUG1 gene [Saccharomyces cerevisiae]
Length = 400
Score = 123 bits (305), Expect = 5e-28
Identities = 62/109 (56%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ +DILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
>gi|1709801|sp|Q01939|PRS8_YEAST 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (SUG1 PROTEIN) (CIM3
PROTEIN) (TAT-BINDING PROTEIN TBY1)
>gi|2133183|pir||S64052 transcription factor SUG1 -
yeast (Saccharomyces cerevisiae) >gi|172878 (L01626)
Tat-binding protein [Saccharomyces cerevisiae]
>gi|1322539|emb|CAA96750| (Z72570) ORF YGL048c
[Saccharomyces cerevisiae]
Length = 405
Score = 123 bits (305), Expect = 5e-28
Identities = 62/109 (56%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ +DILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
>gi|1195528|bbs|172814 26S protease subunit S8=SUG1 homolog [human, erythrocytes, Peptide,
405 aa] >gi|4591|emb|CAA47023| (X66400) sug1
[Saccharomyces cerevisiae]
Length = 405
Score = 123 bits (305), Expect = 5e-28
Identities = 62/109 (56%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ +DILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
>gi|3450955 (AF020736) ATPase homolog [Homo sapiens]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|1709797|sp|P54775|PRS6_MOUSE 26S PROTEASE REGULATORY SUBUNIT 6B (CIP21) >gi|1196528 (L76223)
ATPase [Mus musculus]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|1172637|sp|P43686|PRS6_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6B (TAT-BINDING PROTEIN-7) (TBP-7)
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|2791680 (AF038965) 26S proteasome ATPase subunit [Homo sapiens]
>gi|4096275|gb|AAC99817.1| (U27515) MIP224 [Homo
sapiens]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|2492517|sp|Q63570|PRS6_RAT 26S PROTEASE REGULATORY SUBUNIT 6B (TAT-BINDING PROTEIN-7) (TBP-7)
>gi|1395186|dbj|BAA09340| (D50695) proteasomal ATPase
(Tat-binding protein7) [Rattus norvegicus]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|263099|bbs|121996 Tat binding protein 7, TBP-7=transcriptional activator [human,
Peptide, 458 aa]
Length = 458
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|464863|sp|P34124|PRS8_DICDI 26S PROTEASE REGULATORY SUBUNIT 8 (TAT-BINDING PROTEIN HOMOLOG 10)
>gi|422297|pir||JN0610 probable transcription factor
DdTBP10 - slime mold (Dictyostelium discoideum)
(fragment) >gi|290057 (L16579) HIV1 TAT-binding protein
[Dictyostelium discoideum]
Length = 389
Score = 122 bits (302), Expect = 1e-27
Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDS-DRTGDHEV 151
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EV
Sbjct: 193 FIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEV 252
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
QRTMLELLNQLDG S +K+ + IDILDPALLR GRIDRKIEF
Sbjct: 253 QRTMLELLNQLDGFESTKNIKVLM--CTNRIDILDPALLRPGRIDRKIEF 300
>gi|1172636|sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B >gi|529215 (U12965)
similar to CDC48/PAS1/SEC18 family; highest similarity
to 26S protease subunit 4, member of eukaryotic ATPase
family [Caenorhabditis elegans]
Length = 414
Score = 121 bits (301), Expect = 1e-27
Identities = 63/109 (57%), Positives = 78/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE PSIIFIDEIDAI TKR D+ D EVQ
Sbjct: 223 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQ 282
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 283 RILLELLNQMDGFDQSTNVKVIM--ATNRQDTLDPALLRPGRLDRKIEF 329
>gi|2492521|sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG) >gi|1353667 (U41812) Tat-binding protein
homolog [Naegleria fowleri]
Length = 414
Score = 121 bits (301), Expect = 1e-27
Identities = 63/109 (57%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEV 151
F++++G +LVQ YIG+G+++VR++F +A+E PSIIF+DEID+IG+ R++ + GD EV
Sbjct: 218 FIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEV 277
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
QRTMLELLNQLDG S +++ IDILDPALLR GRIDRKIEF
Sbjct: 278 QRTMLELLNQLDGFES--TQNIKIIMATNRIDILDPALLRPGRIDRKIEF 325
>gi|1172638|sp|P46507|PRS6_MANSE 26S PROTEASE REGULATORY SUBUNIT 6B (ATPASE MS73)
>gi|559486|emb|CAA86294| (Z38135) DEAD-box ATPase
[Manduca sexta]
Length = 415
Score = 121 bits (300), Expect = 2e-27
Identities = 62/109 (56%), Positives = 78/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 224 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 283
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 284 RILLELLNQMDGFDQTTNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 330
>gi|1262435|emb|CAA61864| (X89719) put. 26S protease subunit [Sus scrofa]
Length = 398
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 203 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 262
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 263 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 309
>gi|2564007|dbj|BAA22935| (AB000493) proteasome p45/SUG [Rattus norvegicus]
Length = 374
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 179 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 238
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 239 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 285
>gi|2661071 (AF035309) similar to 26S proteasome subunit p45 [Homo sapiens]
Length = 280
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 85 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 144
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 145 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 191
>gi|1346812|sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASOME SUBUNIT P45) (THYROID
HORMONE RECEPTOR INTERACTING PROTEIN 1) (TRIP1)
>gi|2136007|pir||I53510 proteasome subunit p45 - human
>gi|976227|dbj|BAA07919| (D44467) 26S proteasome subunit
p45 [Homo sapiens] >gi|1096205|prf||2111282A 26S
proteasome [Homo sapiens]
Length = 406
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 270
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 271 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317
>gi|1709800|sp|P52915|PRS8_MOUSE 26S PROTEASE REGULATORY SUBUNIT 8 (MSUG1 PROTEIN) (TAT-BINDING
PROTEIN HOMOLOG 10) (TBP10) (P45/SUG)
>gi|2137798|pir||S61923 SUG1 protein - mouse
>gi|1165125|emb|CAA90961.1| (Z54219) mSUG1 protein [Mus
musculus] >gi|1262433|emb|CAA61863| (X89718) 26S
protease subunit [Sus scrofa] >gi|1395177|dbj|BAA11938|
(D83521) proteasomal ATPase (rat SUG1) [Rattus
norvegicus] >gi|2564003|dbj|BAA22933| (AB000491)
proteasome p45/SUG [Rattus norvegicus] >gi|3193258
(AF069053) proteasome subunit SUG1 [Bos taurus]
Length = 406
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 270
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 271 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317
>gi|3122632|sp|O28303|PRS1_ARCFU PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG AF1976 >gi|2648566
(AE000967) 26S protease regulatory subunit 4
[Archaeoglobus fulgidus]
Length = 398
Score = 120 bits (297), Expect = 4e-27
Identities = 63/108 (58%), Positives = 81/108 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ YIG+GARLVR+VF+LAKE PSIIFIDE+DAI +R++SD +GD EVQ
Sbjct: 203 FIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQ 262
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RTM++LL +LDG R +K+ IDILDPA+LR GR DR IE
Sbjct: 263 RTMMQLLAELDGFDPRGDVKVI--GATNRIDILDPAILRPGRFDRIIE 308
>gi|464860|sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) >gi|422298|pir||JN0611 probable transcription
factor DdTBP2 - slime mold (Dictyostelium discoideum)
>gi|290055 (L16578) HIV1 TAT-binding protein
[Dictyostelium discoideum]
Length = 403
Score = 120 bits (297), Expect = 4e-27
Identities = 60/109 (55%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G RLVRDVF+LA+E P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 212 FIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQ 271
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELLNQ+DG + + +++ D LDPALLR GR+DRKIEF
Sbjct: 272 RILMELLNQMDGF--DVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEF 318
>gi|1709798|sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG >gi|1155334 (U43398)
POTATP1 [Solanum tuberosum]
Length = 413
Score = 118 bits (294), Expect = 1e-26
Identities = 59/109 (54%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDE+DAI T R D+ D EVQ
Sbjct: 222 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQ 281
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 282 RILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 328
>gi|1078797|pir||S51042 tat-binding protein homolog - Plasmodium falciparum
Length = 435
Score = 118 bits (293), Expect = 1e-26
Identities = 62/109 (56%), Positives = 84/109 (76%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG++R + + GD EVQ
Sbjct: 241 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEH-GDSEVQ 299
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTM+ELLNQLDG S +++ IDILD ALLR GRIDRKIEF
Sbjct: 300 RTMMELLNQLDGFES--TQNIKVIMCTNRIDILDEALLRPGRIDRKIEF 346
>gi|3024439|sp|P78578|PRS6_ASPNG 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG >gi|1777414 (U15601) 26S
proteasome subunit [Aspergillus niger]
Length = 423
Score = 118 bits (292), Expect = 2e-26
Identities = 60/109 (55%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF++A+E P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 228 FIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQ 287
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 288 RILLELLNQMDGFEQSSNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 334
>gi|547935|sp|P36612|PRS4_SCHPO 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (MTS2 PROTEIN)
>gi|481780|pir||S39348 26S ATP/ubiquitin-dependent
proteinase chain S4 - fission yeast (Schizosaccharomyces
pombe) >gi|442508|emb|CAA82554| (Z29366) mts2 gene
[Schizosaccharomyces pombe] >gi|738776|prf||2001429A
ubiquitin-dependent protease [Schizosaccharomyces pombe]
Length = 448
Score = 117 bits (290), Expect = 3e-26
Identities = 61/109 (55%), Positives = 76/109 (68%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG RLVR +F A+E PSI+FIDEIDAIGTKR D+ + E+Q
Sbjct: 253 FLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQ 312
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ I LDPAL+R GRIDRKI F
Sbjct: 313 RTMLELLNQLDGF-DTSQRDIKVIMATNRISDLDPALIRPGRIDRKILF 360
>gi|3041724|sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOMOLOG) (XSUG1)
>gi|1877414|emb|CAA57512| (X81986) XSUG1 [Xenopus
laevis]
Length = 461
Score = 116 bits (287), Expect = 6e-26
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 206 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQ 264
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 265 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 311
>gi|807211|bbs|160278 Tat-binding protein alpha, DdTBP alpha=Tat-binding protein 1
homolog/26S protease subunit homolog [Dictyostelium
discoideum, Peptide, 439 aa]
Length = 439
Score = 115 bits (286), Expect = 8e-26
Identities = 59/109 (54%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ G + +Q Y+GDG RLVR+++++A E PSI+FIDEID++ TKR DS G+ E+Q
Sbjct: 246 FKRVVGSEKIQKYLGDGPRLVRELYRVADECAPSIVFIDEIDSVFTKRYDSQSGGEREIQ 305
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +R K + I+ LDPA +R GRIDRKIEF
Sbjct: 306 RTMLELLNQLDGFDARTDCKCIM--ATNRIETLDPARIRPGRIDRKIEF 352
>gi|3687465|emb|CAA21189| (AL031798) 26s protease regulatory subunit 6b homolog
[Schizosaccharomyces pombe]
Length = 389
Score = 115 bits (285), Expect = 1e-25
Identities = 58/109 (53%), Positives = 77/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF++A+E P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 196 FIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQ 255
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELL Q+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 256 RILIELLTQMDGFDQGANVKVIM--ATNRADTLDPALLRPGRLDRKIEF 302
>gi|2492520|sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 7
>gi|3875191|emb|CAB01414| (Z78012) Similarity to Human
26S protease regulatory subunit 7 (SW:PRS7_HUMAN); cDNA
EST yk314h3.5 comes from this gene; cDNA EST yk339d4.3
comes from this gene; cDNA EST yk339d4.5 comes from this
gene; cDNA EST yk505e8.3 comes...
Length = 435
Score = 115 bits (285), Expect = 1e-25
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDA+G R D + GD+EVQ
Sbjct: 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQ 298
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRK+EF
Sbjct: 299 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKVEF 345
>gi|4506209|oth|NP_002794|PPSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2
>gi|547930|sp|P35998|PRS7_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 7 (MSS1 PROTEIN) >gi|107102|pir||S24353 MSS1
protein - human >gi|219931|dbj|BAA01868| (D11094) MSS1
protein [Homo sapiens] >gi|228886|prf||1813280A
tat-mediated transactivation modulator [Homo sapiens]
Length = 433
Score = 115 bits (285), Expect = 1e-25
Identities = 59/109 (54%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|1172640|sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1079305|pir||S53709 MSS1 protein homolog - African
clawed frog >gi|695772|emb|CAA56438| (X80157) xMSS1
[Xenopus laevis] >gi|1095500|prf||2109230A MSS1-like
protein [Xenopus laevis]
Length = 433
Score = 115 bits (285), Expect = 1e-25
Identities = 59/109 (54%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|3914449|sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|3172331 (AF041258) 26S proteasome subunit 7 [Prunus
persica]
Length = 425
Score = 115 bits (284), Expect = 1e-25
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K I+F DE+DAIG R D GD+EVQ
Sbjct: 229 FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 288
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLE++NQLDG +R +K+ + D LDPALLR GR+DRK+EF
Sbjct: 289 RTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEF 335
>gi|2492519|sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|1395191|dbj|BAA13021| (D86121) 26S proteasome ATPase
subunit [Spinacia oleracea]
Length = 426
Score = 115 bits (284), Expect = 1e-25
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K I+F DE+DAIG R D GD+EVQ
Sbjct: 230 FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLE++NQLDG +R +K+ + D LDPALLR GR+DRK+EF
Sbjct: 290 RTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEF 336
>gi|4506213|oth|NP_002796|PPSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5
>gi|2136322|pir||S60343 Trip1 protein - human >gi|695370
(L38810) thyroid receptor interactor [Homo sapiens]
>gi|1094810|prf||2106382A thyroid hormone
receptor-interacting protein [Homo sapiens]
Length = 406
Score = 115 bits (284), Expect = 1e-25
Identities = 59/109 (54%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + G EVQ
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGSSEVQ 270
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R MLELLNQLDG +++ ID+LD ALLR GRIDRKIEF
Sbjct: 271 RQMLELLNQLDGF--EATKNIKVIMATNRIDMLDSALLRPGRIDRKIEF 317
>gi|543291|pir||S39349 MSS1 protein homolog - mouse
Length = 433
Score = 114 bits (282), Expect = 2e-25
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DE+DAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEMDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|2492518|sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1395179|dbj|BAA09339| (D50694) proteasomal ATPase
(MSS1) [Rattus norvegicus]
Length = 433
Score = 114 bits (282), Expect = 2e-25
Identities = 59/109 (54%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDAIG R D GD+EVQ
Sbjct: 237 FIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|2506089|sp|P46471|PRS7_MOUSE 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
Length = 433
Score = 114 bits (282), Expect = 2e-25
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DE+DAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEMDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|464861|sp|P33298|PRS6_YEAST 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (YNT1 PROTEIN)
(TAT-BINDING HOMOLOG 2) >gi|313880|emb|CAA51972|
(X73570) 26S proteasome subunit Rpt3 [Saccharomyces
cerevisiae] >gi|458389 (U06229) Ynt1p [Saccharomyces
cerevisiae]
Length = 428
Score = 113 bits (280), Expect = 4e-25
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + V Y+G+G R+VRDVF+LA+E PSIIFIDE+D+I TKR D+ D EVQ
Sbjct: 234 FIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELL Q+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 294 RILIELLTQMDGFDQSTNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 340
>gi|2133217|pir||S69678 YTA2 protein - yeast (Saccharomyces cerevisiae) >gi|927327 (U32274)
Yta2p; CAI: 0.21 [Saccharomyces cerevisiae]
Length = 428
Score = 113 bits (280), Expect = 4e-25
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + V Y+G+G R+VRDVF+LA+E PSIIFIDE+D+I TKR D+ D EVQ
Sbjct: 234 FIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELL Q+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 294 RILIELLTQMDGFDQSTNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 340
>gi|3122631|sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH728 >gi|2621817
(AE000852) ATP-dependent 26S protease regulatory subunit
4 [Methanobacterium thermoautotrophicum]
Length = 410
Score = 112 bits (277), Expect = 9e-25
Identities = 61/108 (56%), Positives = 75/108 (68%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+K+ + V+ YIG+GARLVR VF+LAKE PSIIFIDEIDA+ KR S +GD EVQ
Sbjct: 213 FIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQ 272
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+++LL +LDG SR + + DILDPALLR GR DR IE
Sbjct: 273 RTLMQLLAELDGFESR--GNVGIVAATNRPDILDPALLRPGRFDRFIE 318
>gi|464862|sp|P33299|PRS7_YEAST 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG (CIM5 PROTEIN)
(TAT-BINDING HOMOLOG 3) >gi|422126|pir||S34354
tat-binding protein homolog YTA3 - yeast (Saccharomyces
cerevisiae) >gi|313882|emb|CAA51973| (X73571) 26S
proteasome subunit Rpt1 [Saccharomyces cerevisiae]
>gi|410510|emb|CAA80470| (Z22817) putative ATPase
[Saccharomyces cerevisiae] >gi|486249|emb|CAA81986|
(Z28145) ORF YKL145w [Saccharomyces cerevisiae]
>gi|738777|prf||2001430A 26S protease [Saccharomyces
cerevisiae]
Length = 467
Score = 112 bits (277), Expect = 9e-25
Identities = 58/109 (53%), Positives = 77/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K IIF DEIDA+G R D GD+EVQ
Sbjct: 271 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQ 330
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+ QLDG R +K+ + LDPALLR GRIDRK+EF
Sbjct: 331 RTMLELITQLDGFDPRGNIKVMF--ATNRPNTLDPALLRPGRIDRKVEF 377
>gi|2492524|sp|Q58576|PRS1_METJA PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MJ1176
>gi|2127779|pir||G64446 ATP-dependent 26S proteosome
regulatory subunit 4 homolog - Methanococcus jannaschii
>gi|1591803 (U67559) proteasome regulatory AAA-ATPase
[Methanococcus jannaschii]
Length = 430
Score = 111 bits (276), Expect = 1e-24
Identities = 59/108 (54%), Positives = 79/108 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LV+ +IG+GA LV+D+FKLAKE PSIIFIDEIDAI KR+D+ GD EVQ
Sbjct: 232 FIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQ 291
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+++LL ++DG +R +K+ DILDPA+LR GR DR IE
Sbjct: 292 RTLMQLLAEMDGFDARGDVKII--GATNRPDILDPAILRPGRFDRIIE 337
>gi|3256587|dbj|BAA29270| (AP000001) 399aa long hypothetical 26S protease regulatory subunit
[Pyrococcus horikoshii]
Length = 399
Score = 109 bits (269), Expect = 8e-24
Identities = 57/108 (52%), Positives = 76/108 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LV+ YIG+GARLV ++F+LAKE P+IIFIDEIDAIG KR D G+ EV
Sbjct: 202 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 261
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+++LL ++DG R +++ DILDPALLR GR DR IE
Sbjct: 262 RTLMQLLAEMDGFDPR--GNVKVIAATNRPDILDPALLRPGRFDRLIE 307
>gi|2853099|emb|CAA16915| (AL021767) 26s protease regulatory subunit 7 [Schizosaccharomyces
pombe]
Length = 440
Score = 108 bits (267), Expect = 1e-23
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K IIF DEIDAIG R D GD+EVQ
Sbjct: 243 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ 302
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+ QLDG R +K+ + LD AL+R GRIDRK+EF
Sbjct: 303 RTMLELITQLDGFDPRGNIKVLF--ATNRPNTLDEALMRPGRIDRKVEF 349
>gi|3122625|sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT S10B >gi|2394434
(AF024493) strong similarity to the AAA family of
ATPases [Caenorhabditis elegans]
Length = 398
Score = 106 bits (262), Expect = 5e-23
Identities = 53/108 (49%), Positives = 75/108 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ AR++R++F A++ +P I+F+DEIDAIG +R + D E+Q
Sbjct: 204 FLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQ 263
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT++ELLNQLDG S + K+++ D LDPALLR GR+DRKIE
Sbjct: 264 RTLMELLNQLDGFDS--LGKVKVIMATNRPDTLDPALLRPGRLDRKIE 309
>gi|2960216|emb|CAA11285| (AJ223384) 26S proteasome regulatory ATPase subunit 10b (S10b)
[Manduca sexta]
Length = 396
Score = 105 bits (260), Expect = 9e-23
Identities = 53/108 (49%), Positives = 75/108 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ ARL+R++F A++ +P IIF+DEIDAIG +R + D E+Q
Sbjct: 202 FLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 261
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT++ELLNQ+DG S + ++++ D LDPALLR GR+DRKIE
Sbjct: 262 RTLMELLNQMDGFDS--LGQVKIIMATNRPDTLDPALLRPGRLDRKIE 307
>gi|1709804|sp|P49719|PRSX_SPETR 26S PROTEASE REGULATORY SUBUNIT S10B (P44) (CONSERVED ATPASE DOMAIN
PROTEIN 44) >gi|1045497 (U36395) conserved ATPase domain
protein 44 [Spermophilus tridecemlineatus] >gi|2213932
(AF006305) 26S proteasome regulatory subunit [Homo
sapiens]
Length = 389
Score = 103 bits (255), Expect = 4e-22
Identities = 51/107 (47%), Positives = 73/107 (67%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ ARL+R++F A++ +P IIF+DEIDAIG +R + D E+Q
Sbjct: 195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 254
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
RT++ELLNQ+DG + ++++ D LDPALLR GR+DRKI
Sbjct: 255 RTLMELLNQMDGF--DTLHRVKMIMATNRPDTLDPALLRPGRLDRKI 299
>gi|4506215|oth|NP_002797|PPSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6
>gi|2492522|sp|Q92524|PRSX_HUMAN 26S PROTEASE REGULATORY
SUBUNIT S10B (PROTEASOME SUBUNIT P42)
>gi|1526426|dbj|BAA11338| (D78275) proteasome subunit
p42 [Homo sapiens]
Length = 389
Score = 103 bits (255), Expect = 4e-22
Identities = 51/107 (47%), Positives = 73/107 (67%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ ARL+R++F A++ +P IIF+DEIDAIG +R + D E+Q
Sbjct: 195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 254
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
RT++ELLNQ+DG + ++++ D LDPALLR GR+DRKI
Sbjct: 255 RTLMELLNQMDGF--DTLHRVKMTMATNRPDTLDPALLRPGRLDRKI 299
>gi|3135751|emb|CAA06853| (AJ006095) 26S protease regulatory subunit 6 [Cicer arietinum]
Length = 177
Score = 102 bits (253), Expect = 6e-22
Identities = 53/94 (56%), Positives = 67/94 (70%)
Query: 282 DGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDGV*S 103
+G R+VRDVF+LAKE P+IIFIDE+DAI T R D+ D EVQR ++ELLNQ+DG
Sbjct: 1 EGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ 60
Query: 102 RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
+ +K+ + D LDPALLR GR+DRKIEF
Sbjct: 61 TVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 92
>gi|1147800 (U43720) Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 96.3 bits (236), Expect = 6e-20
Identities = 47/100 (47%), Positives = 69/100 (69%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
+V YIG+ AR++R++F AKE +P IIF+DE+DAIG +R + D E+QRT++ELL
Sbjct: 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310
Query: 123 QLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
Q+DG + + + ++ D LDPALLR GR+DRK+E
Sbjct: 311 QMDGFDN--LGQTKIIMATNRPDTLDPALLRPGRLDRKVE 348
>gi|2506090|sp|P53549|SUG2_YEAST PROBABLE 26S PROTEASE SUBUNIT SUG2 (PROTEASOME CAP SUBUNIT)
>gi|2133163|pir||S67156 SUG2 protein - yeast
(Saccharomyces cerevisiae) >gi|1420585|emb|CAA99481|
(Z75167) ORF YOR259c [Saccharomyces cerevisiae]
>gi|1931623 (U93262) proteasome cap subunit
[Saccharomyces cerevisiae]
Length = 437
Score = 96.3 bits (236), Expect = 6e-20
Identities = 47/100 (47%), Positives = 69/100 (69%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
+V YIG+ AR++R++F AKE +P IIF+DE+DAIG +R + D E+QRT++ELL
Sbjct: 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310
Query: 123 QLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
Q+DG + + + ++ D LDPALLR GR+DRK+E
Sbjct: 311 QMDGFDN--LGQTKIIMATNRPDTLDPALLRPGRLDRKVE 348
>gi|2982331 (AF051251) TAT-binding protein homolog [Picea mariana]
Length = 175
Score = 91.7 bits (224), Expect = 2e-18
Identities = 52/87 (59%), Positives = 63/87 (71%), Gaps = 1/87 (1%)
Query: 261 DVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEVQRTMLELLNQLDGV*SRIIMKL 85
++F +A+E PSIIF+DEID+IG+ R +S GD EVQRTMLELLNQLDG K+
Sbjct: 1 ELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGF--EASNKI 58
Query: 84 RL*RQPTXIDILDPALLRSGRIDRKIEF 1
++ IDILD ALLR GRIDRKIEF
Sbjct: 59 KVLMATNRIDILDQALLRPGRIDRKIEF 86
>gi|3603077|gb|AAC35738| (AF041468) hypothetical chloroplast RF25 [Guillardia theta]
Length = 631
Score = 86.6 bits (211), Expect = 5e-17
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+FIDEIDA+G +R G+ E +
Sbjct: 234 FFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGNDERE 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + +D+LD ALLR GR DR++
Sbjct: 294 QTLNQLLTEMDGFEGN--TGIIIIAATNRVDVLDAALLRPGRFDRQV 338
>gi|3122118|sp|P96942|FTSH_MYCTU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2113966|emb|CAB08956|
(Z95557) ftsH [Mycobacterium tuberculosis]
Length = 760
Score = 85.4 bits (208), Expect = 1e-16
Identities = 47/107 (43%), Positives = 69/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIF+DEIDA+G +R G E +
Sbjct: 224 FFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDERE 283
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG R ++ + +P DILDPALLR GR DR+I
Sbjct: 284 QTLNQLLVEMDGFGDRAGVILIAATNRP---DILDPALLRPGRFDRQI 328
>gi|2465738 (AF022186) cell division protein [Cyanidium caldarium]
Length = 614
Score = 85.4 bits (208), Expect = 1e-16
Identities = 48/107 (44%), Positives = 70/107 (64%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+FIDEIDA+G +R G+ E +
Sbjct: 232 FFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDERE 291
Query: 147 RTMLELLNQLDGV--*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + +I+ R ID+LD ALLR GR DR+I
Sbjct: 292 QTLNQLLTEMDGFSGDTGVIVVAATNR----IDVLDSALLRPGRFDRQI 336
>gi|3097225|emb|CAA18796| (AL023093) cell division protein FtsH [Mycobacterium leprae]
Length = 787
Score = 85.0 bits (207), Expect = 2e-16
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F AK+ P IIF+DEIDA+G +R G E +
Sbjct: 224 FFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDAVGRQRGTGLGGGHDERE 283
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG R ++ + +P DILDPALLR GR DR+I
Sbjct: 284 QTLNQLLVEMDGFGDRAGVILIAATNRP---DILDPALLRPGRFDRQI 328
>gi|1169754|sp|P46469|FTSH_LACLA CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2126621|pir||S28533 tma
protein - Lactococcus lactis >gi|44027|emb|CAA48877|
(X69123) Tma protein [Lactococcus lactis]
Length = 695
Score = 84.7 bits (206), Expect = 2e-16
Identities = 48/107 (44%), Positives = 70/107 (64%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ PSIIFIDEIDA+G +R G+ E +
Sbjct: 254 FYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSIIFIDEIDAVGRQRGAGLGGGNDERE 313
Query: 147 RTMLELLNQLDGV---*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + +I+ R D+LDPALLR GR DRK+
Sbjct: 314 QTLNQLLVEMDGFQDDGNSVIVIAATNRS----DVLDPALLRPGRFDRKV 359
>gi|3426264 (AF037269) cell division protein [Mycobacterium smegmatis]
Length = 769
Score = 84.7 bits (206), Expect = 2e-16
Identities = 47/107 (43%), Positives = 69/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIF+DEIDA+G +R G E +
Sbjct: 224 FFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDERE 283
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG R ++ + +P DILDPALLR GR DR+I
Sbjct: 284 QTLNQLLVEMDGFGDRQGVILIAATNRP---DILDPALLRPGRFDRQI 328
>gi|3808101|emb|CAA09935| (AJ012165) chloroplast protease [Capsicum annuum]
Length = 693
Score = 84.7 bits (206), Expect = 2e-16
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+F+DEIDA+G +R G+ E +
Sbjct: 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG II+ R DILD ALLR GR DR++
Sbjct: 352 QTLNQLLTEMDGFEGNTGIIVVAATNR----ADILDSALLRPGRFDRQV 396
>gi|4325041|gb|AAD17230| (AF117339) FtsH-like protein Pftf precursor [Nicotiana tabacum]
Length = 693
Score = 84.7 bits (206), Expect = 2e-16
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+F+DEIDA+G +R G+ E +
Sbjct: 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG II+ R DILD ALLR GR DR++
Sbjct: 352 QTLNQLLTEMDGFEGNTGIIVVAATNR----ADILDSALLRPGRFDRQV 396
>gi|3323067 (AE001247) cell division protein (ftsH) [Treponema pallidum]
Length = 609
Score = 84.3 bits (205), Expect = 3e-16
Identities = 46/107 (42%), Positives = 72/107 (66%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +++G ++M++G GA VRD+FK A+E P IIFIDE+DAIG R ++ + D E +
Sbjct: 202 FFRISGSDFIEMFVGIGASRVRDLFKQAREKAPGIIFIDELDAIGKSRLNAIHSND-ERE 260
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + ++ L +P D+LDPALLR GR DR++
Sbjct: 261 QTLNQLLVEMDGFDNTTGLILLAATNRP---DVLDPALLRPGRFDRQV 305
>gi|3201633 (AC004669) putative cell division protein [Arabidopsis thaliana]
Length = 695
Score = 84.3 bits (205), Expect = 3e-16
Identities = 46/107 (42%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+F+DEIDA+G +R G+ E +
Sbjct: 288 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 347
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG +I+ R DILD ALLR GR DR++
Sbjct: 348 QTLNQLLTEMDGFEGNTGVIVVAATNR----ADILDSALLRPGRFDRQV 392
>gi|2492510|sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|1001602|dbj|BAA10230|
(D64000) cell division protein FtsH [Synechocystis sp.]
Length = 627
Score = 84.3 bits (205), Expect = 3e-16
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P +IFIDEIDA+G +R G+ E +
Sbjct: 233 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDERE 292
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG I+ + +P D+LD AL+R GR DR++
Sbjct: 293 QTLNQLLTEMDGFEGNTGIIIIAATNRP---DVLDSALMRPGRFDRQV 337
>gi|3122116|sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2660540|emb|CAA05102|
(AJ001932) cell cycle protein [Helicobacter felis]
Length = 638
Score = 83.9 bits (204), Expect = 3e-16
Identities = 48/107 (44%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEV 151
F + G ++M++G GA VRD+F +AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 237 FFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDAIGKSRAAGGMISGNDER 296
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S ++ L +P +ILDPALLR GR DR++
Sbjct: 297 EQTLNQLLAEMDGFGSENAPVIVLAATNRP---EILDPALLRPGRFDRQV 343
>gi|2492511|sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 2 >gi|1652282|dbj|BAA17205|
(D90904) cell division protein FtsH [Synechocystis sp.]
Length = 665
Score = 83.5 bits (203), Expect = 4e-16
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P ++FIDEIDA+G +R G+ E +
Sbjct: 272 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDERE 331
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG I+ + +P D+LD ALLR GR DR++
Sbjct: 332 QTLNQLLTEMDGFEGNSGIIVIAATNRP---DVLDLALLRPGRFDRQV 376
>gi|1706926|sp|P51327|FTSH_PORPU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2147534|pir||S73248
hypothetical protein 25 - Porphyra purpurea chloroplast
>gi|1276793 (U38804) hypothetical chloroplast ORF 25.
[Porphyra purpurea]
Length = 628
Score = 83.1 bits (202), Expect = 6e-16
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AK+ P I+FIDEIDA+G +R G+ E +
Sbjct: 234 FFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDERE 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + DILD ALLR GR DR++
Sbjct: 294 QTLNQLLTEMDGFEGN--TGVIVIAATNRADILDSALLRPGRFDRQV 338
>gi|3820564 (AF080002) ATP-dependent zinc metallopeptidase FtsH [Heliobacillus
mobilis]
Length = 601
Score = 83.1 bits (202), Expect = 6e-16
Identities = 47/107 (43%), Positives = 69/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P I+FIDEIDA+G +R G E +
Sbjct: 219 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGGHDERE 278
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + I+ + +P DILDPALLR GR DR+I
Sbjct: 279 QTLNQLLVEMDGFSANEGIIIIAATNRP---DILDPALLRPGRFDRQI 323
>gi|1706925|sp|P49825|FTSH_ODOSI CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1185191|emb|CAA91674|
(Z67753) ORF 644 [Odontella sinensis]
Length = 644
Score = 82.7 bits (201), Expect = 8e-16
Identities = 46/107 (42%), Positives = 66/107 (60%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +AG + V+M+IG GA VRD+FK A E P I+FIDEIDA+G +R G+ E +
Sbjct: 247 FFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDERE 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + + DILD ALLR GR DR++
Sbjct: 307 QTLNQLLTEMDGF--KENKGVIVVGATNRADILDAALLRPGRFDRQV 351
>gi|3122117|sp|P94304|FTSH_BACFI CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1813473 (U61844) cell
division protein [Bacillus firmus]
Length = 679
Score = 82.7 bits (201), Expect = 8e-16
Identities = 46/108 (42%), Positives = 67/108 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G +R G E +
Sbjct: 227 FFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDERE 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+T+ +LL ++DG + + + DILDPALLR GR DR+I+
Sbjct: 287 QTLNQLLVEMDGFSAN--EGIIIIAATNRADILDPALLRPGRFDRQIQ 332
>gi|4154882 (AE001471) ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori
J99]
Length = 632
Score = 82.7 bits (201), Expect = 8e-16
Identities = 47/107 (43%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEV 151
F + G ++M++G GA VRD+F+ AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 231 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGMISGNDER 290
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S ++ L +P +ILDPAL+R GR DR++
Sbjct: 291 EQTLNQLLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFDRQV 337
>gi|2983448 (AE000714) cell division protein FtsH [Aquifex aeolicus]
Length = 634
Score = 82.3 bits (200), Expect = 1e-15
Identities = 50/107 (46%), Positives = 70/107 (64%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDH-EV 151
F+ ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G R G H E
Sbjct: 216 FISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDAVGRARGAIPVGGGHDER 275
Query: 150 QRTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S I+ + +P DILDPALLR GR DR+I
Sbjct: 276 EQTLNQLLVEMDGFDTSDGIIVIAATNRP---DILDPALLRPGRFDRQI 321
>gi|2492508|sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2314219|gb|AAD08115.1|
(AE000614) cell division protein (ftsH) [Helicobacter
pylori 26695]
Length = 632
Score = 81.9 bits (199), Expect = 1e-15
Identities = 47/107 (43%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSD-RTGDHEV 151
F + G ++M++G GA VRD+F+ AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 231 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDER 290
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S ++ L +P +ILDPAL+R GR DR++
Sbjct: 291 EQTLNQLLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFDRQV 337
>gi|120570|sp|P28691|FTSH_ECOLI CELL DIVISION PROTEIN FTSH >gi|421034|pir||S35109 ftsH protein -
Escherichia coli >gi|146028 (M83138) ftsH [Escherichia
coli] >gi|606116 (U18997) CG Site No. 735 [Escherichia
coli] >gi|1789568 (AE000398) degrades sigma32, integral
membrane peptidase, cell division protein [Escherichia
coli]
Length = 644
Score = 81.5 bits (198), Expect = 2e-15
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G +R G E +
Sbjct: 213 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 272
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ ++L ++DG + I+ + +P D+LDPALLR GR DR++
Sbjct: 273 QTLNQMLVEMDGFEGNEGIIVIAATNRP---DVLDPALLRPGRFDRQV 317
>gi|3128469 (AF061748) cell division protein FtsH [Streptococcus pneumoniae]
Length = 498
Score = 81.5 bits (198), Expect = 2e-15
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VR +F+ AK+ P+IIFIDEIDA+G +R G+ E +
Sbjct: 103 FFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDERE 162
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG II+ R D+LDPALLR GR DRK+
Sbjct: 163 QTLNQLLIEMDGFEGNEGIIVIAATNRS----DVLDPALLRPGRFDRKV 207
>gi|746401 (U01376) ATP-binding protein [Escherichia coli]
Length = 647
Score = 81.5 bits (198), Expect = 2e-15
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G +R G E +
Sbjct: 216 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 275
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ ++L ++DG + I+ + +P D+LDPALLR GR DR++
Sbjct: 276 QTLNQMLVEMDGFEGNEGIIVIAATNRP---DVLDPALLRPGRFDRQV 320
>gi|585159|sp|P37476|FTSH_BACSU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2126904|pir||S66099 cell
division protein FtsH - Bacillus subtilis
>gi|467458|dbj|BAA05304| (D26185) cell division protein
[Bacillus subtilis] >gi|2632336|emb|CAB11845| (Z99104)
cell-division protein and general stress protein (class
III heat-shock) [Bacillus subtilis]
Length = 637
Score = 81.1 bits (197), Expect = 2e-15
Identities = 45/107 (42%), Positives = 66/107 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P +IFIDEIDA+G +R G E +
Sbjct: 222 FFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDERE 281
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + + DILDPALLR GR DR+I
Sbjct: 282 QTLNQLLVEMDGFSAN--EGIIIIAATNRADILDPALLRPGRFDRQI 326
>gi|1168858|sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH protein - Halobacterium
salinarium >gi|517390|emb|CAA56097| (X79560) cdcH
[Halobacterium salinarum]
Length = 742
Score = 80.4 bits (195), Expect = 4e-15
Identities = 44/108 (40%), Positives = 69/108 (63%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +AGP+++ Y G+ + +R++F+ AK+ PSIIFIDE+D+I KR D TG+ E +
Sbjct: 251 FFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDV--TGEVE-R 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +D +DPAL R GR DR+IE
Sbjct: 308 RVVAQLLTMMDGLEGR--GQVIVIAATNRVDAVDPALRRPGRFDREIE 353
Score = 74.1 bits (179), Expect = 3e-13
Identities = 37/108 (34%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GPQL+ ++G+ + +R F+ A++ P++IF DE+D++ R + G++ +
Sbjct: 524 FISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTG--GNNVSE 581
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +LDG+ +M + +P DI+DPAL+RSGR DR ++
Sbjct: 582 RVVNQLLTELDGLEEMEEVMVIAATNRP---DIIDPALIRSGRFDRLVQ 627
>gi|2199518 (U97567) FtsH [Helicobacter pylori]
Length = 632
Score = 80.4 bits (195), Expect = 4e-15
Identities = 46/107 (42%), Positives = 70/107 (64%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSD-RTGDHEV 151
F + G ++M++G GA VRD+F+ AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 231 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDER 290
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ + L ++DG S ++ L +P +ILDPAL+R GR DR++
Sbjct: 291 EQTLNQFLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFDRQV 337
>gi|541748|emb|CAA54091| (X76643) Afg3p [Saccharomyces cerevisiae]
Length = 761
Score = 80.4 bits (195), Expect = 4e-15
Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG--DHE 154
FL ++G + V+M++G GA VRD+F A+ PSIIFIDEIDAIG +R G + E
Sbjct: 349 FLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDE 408
Query: 153 VQRTMLELLNQLDG-V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+RT+ +LL ++DG S ++ L +P D+LD AL+R GR DR I+
Sbjct: 409 RERTLNQLLVEMDGFTTSDQVVVLAGTNRP---DVLDNALMRPGRFDRHIQ 456
>gi|2062173 (AC001645) cell division protein FtsH isolog [Arabidopsis thaliana]
Length = 983
Score = 80.4 bits (195), Expect = 4e-15
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ Q V++Y+G GA VR +++ A+E PS++FIDE+DA+G +R +G E
Sbjct: 633 FFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELDAVGRERGLIKGSGGQERD 692
Query: 147 RTMLELLNQLDGV*SR-IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
T+ +LL LDG R ++ + +P DILDPAL+R GR DRKI
Sbjct: 693 ATLNQLLVSLDGFEGRGEVITIASTNRP---DILDPALVRPGRFDRKI 737
>gi|2492513|sp|P72991|FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 4 >gi|1652085|dbj|BAA17010|
(D90902) cell division protein FtsH [Synechocystis sp.]
Length = 616
Score = 80.0 bits (194), Expect = 5e-15
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+F+ AK P I+FIDEIDA+G +R G+ E +
Sbjct: 222 FFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQRGAGLGGGNDERE 281
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG I+ + +P D+LD AL+R GR DR++
Sbjct: 282 QTLNQLLTEMDGFEGNTGIIIVAATNRP---DVLDSALMRPGRFDRQV 326
>gi|3329313 (AE001357) ATP-dependent zinc protease [Chlamydia trachomatis]
Length = 913
Score = 79.6 bits (193), Expect = 7e-15
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +AG V+M++G GA +RD+F+ AK P IIFIDEIDA+G R G E +
Sbjct: 487 FFSIAGSDFVEMFVGVGASRIRDMFEQAKRNAPCIIFIDEIDAVGRHRGAGIGGGHDERE 546
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + +I+ R D+LD ALLR GR DR++
Sbjct: 547 QTLNQLLVEMDGFGTNEGVILMAATNRP----DVLDKALLRPGRFDRRV 591
>gi|4377327|gb|AAD19135| (AE001680) ATP-dependent zinc protease [Chlamydia pneumoniae]
Length = 910
Score = 79.6 bits (193), Expect = 7e-15
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +AG V+M++G GA +RD+F+ AK P IIFIDEIDA+G R G E +
Sbjct: 488 FFSIAGSDFVEMFVGVGASRIRDMFEQAKRNAPCIIFIDEIDAVGRHRGAGIGGGHDERE 547
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + +I+ R D+LD ALLR GR DR++
Sbjct: 548 QTLNQLLVEMDGFGTNEGVILMAATNRP----DVLDKALLRPGRFDRRV 592
>gi|1589774 (U59452) HpFtsH [Helicobacter pylori]
Length = 632
Score = 79.6 bits (193), Expect = 7e-15
Identities = 46/107 (42%), Positives = 70/107 (64%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEV 151
F + G ++M++G GA VRD+F+ AK+ PSIIFIDEIDAI R+ +G+ E
Sbjct: 231 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIPKSRAAGGMISGNDER 290
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S ++ L +P +ILDPAL+R GR DR++
Sbjct: 291 EQTLNQLLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFDRQV 337
>gi|3116137|emb|CAA18886| (AL023288) AAA family ATPase protein [Schizosaccharomyces pombe]
Length = 809
Score = 79.6 bits (193), Expect = 7e-15
Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L ++G+ R VR VF+ A++ PS+IF DEIDA+ R + D+
Sbjct: 610 FIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANRGE-----DNSSD 664
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDR 13
R + LLN+LDG+ + R ++ L +P D++DPAL+R GR+DR
Sbjct: 665 RVVAALLNELDGIEALRNVLVLAATNRP---DMIDPALMRPGRLDR 707
Score = 60.5 bits (144), Expect = 4e-09
Identities = 35/103 (33%), Positives = 58/103 (55%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLE 133
GP +V Y+G+ +R +F+ A+ +PSIIFIDEIDA+ KR++ + T+L
Sbjct: 346 GPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAESRAVATLLT 405
Query: 132 LLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
LL+ + +++ +P I D AL R GR++++IE
Sbjct: 406 LLDGMANAGKVVVIAAT--NRPNSI---DEALRRPGRLEKEIE 443
>gi|1881481|emb|CAB05953| (Z83338) FtsH [Mycobacterium tuberculosis]
Length = 121
Score = 79.2 bits (192), Expect = 9e-15
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIF+DEIDA+G +R G E +
Sbjct: 22 FFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDERE 81
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGR 22
+T+ +LL ++DG R ++ + +P DILDPALLR GR
Sbjct: 82 QTLNQLLVEMDGFGDRAGVILIAATNRP---DILDPALLRPGR 121
>gi|3258278|dbj|BAA30961| (AP000007) 798aa long hypothetical transitional endoplasmic
reticulum ATPase [Pyrococcus horikoshii]
Length = 798
Score = 79.2 bits (192), Expect = 9e-15
Identities = 49/108 (45%), Positives = 68/108 (62%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ Y G+ +R+VFK A+E PSIIFIDEIDAI KRS+ TG+ E +
Sbjct: 247 FIAINGPEIMSKYYGESEERLREVFKEAEENAPSIIFIDEIDAIAPKRSEV--TGEVE-K 303
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R K+ + D LDPAL R GR DR+IE
Sbjct: 304 RVVAQLLALMDGLKGR--GKVIVIGATNRPDALDPALRRPGRFDREIE 349
Score = 74.9 bits (181), Expect = 2e-13
Identities = 41/107 (38%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKR-SDSDRTGDHEV 151
F+ + GP+++ ++G+ + +R++F+ A++ P++IFIDEIDAI +R +D +R D
Sbjct: 581 FIAVRGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTD--- 637
Query: 150 QRTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ ++ + +P DILDPALLR GR DR I
Sbjct: 638 -RLINQLLTEMDGIQENTGVVVIAATNRP---DILDPALLRPGRFDRLI 682
>gi|730715|sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S43859 ATPase - Sulfolobus
acidocaldarius >gi|310600 (L17042) ATPase [Sulfolobus
acidocaldarius]
Length = 780
Score = 78.8 bits (191), Expect = 1e-14
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ + G+ + +R++FK A+E PSIIFIDEIDAI KR D TG+ E +
Sbjct: 274 FITVNGPEIMSKFYGESEQRIREIFKEAEENAPSIIFIDEIDAIAPKREDV--TGEVE-K 330
Query: 147 RTMLELLNQLDGV*SR-IIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +P D +DPAL R GR DR+IE
Sbjct: 331 RVVAQLLTLMDGIKGRGRVIVIGATNRP---DAIDPALRRPGRFDREIE 376
Score = 72.2 bits (174), Expect = 1e-12
Identities = 38/107 (35%), Positives = 66/107 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ ++G+ + +R++F+ A++ P++IF DEID+I R S +G +
Sbjct: 549 FIAVRGPEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPIRGLSTDSG--VTE 606
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ + K+ + DILDPALLR GR DR I
Sbjct: 607 RIVNQLLAEMDGIVP--LNKVVIIAATNRPDILDPALLRPGRFDRLI 651
>gi|2492509|sp|P75120|FTSH_MYCPN CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2146083|pir||S73497 cell
division protein ftsH - Mycoplasma pneumoniae (SGC3)
(ATCC 29342) >gi|1673833 (AE000018) Mycoplasma
pneumoniae, cell division protein FtsH; similar to
Swiss-Prot Accession Number P37476, from B. subtilis
[Mycoplasma pneumoniae]
Length = 709
Score = 78.8 bits (191), Expect = 1e-14
Identities = 45/108 (41%), Positives = 66/108 (60%), Gaps = 3/108 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + G M +G GA+ VRD+F AK+ P IIFIDEID++G+KR + + V+
Sbjct: 289 FFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVE 348
Query: 147 RTMLELLNQLDGV*SR---IIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+T+ +LL ++DG SR ++M +D+LD ALLR GR DR I+
Sbjct: 349 QTLNQLLAEMDGFTSRTGVVVM-----AATNRLDVLDDALLRPGRFDRHIQ 394
>gi|508233 (U09358) Rca1p [Saccharomyces cerevisiae]
Length = 825
Score = 78.8 bits (191), Expect = 1e-14
Identities = 48/107 (44%), Positives = 70/107 (64%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG-DHEV 151
F ++G + V+M++G GA VRD+FK A+E PSI+FIDEIDAIG R + +G + E
Sbjct: 409 FYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDER 468
Query: 150 QRTMLELLNQLDG-V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+ T+ ++L ++DG + ++ L +P DILD ALLR GR DR I
Sbjct: 469 ENTLNQMLVEMDGFTPADHVVVLAGTNRP---DILDKALLRPGRFDRHI 514
>gi|531754|emb|CAA56955| (X81068) probable mitochondrial protein [Saccharomyces cerevisiae]
Length = 825
Score = 78.8 bits (191), Expect = 1e-14
Identities = 48/107 (44%), Positives = 70/107 (64%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG-DHEV 151
F ++G + V+M++G GA VRD+FK A+E PSI+FIDEIDAIG R + +G + E
Sbjct: 409 FYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDER 468
Query: 150 QRTMLELLNQLDG-V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+ T+ ++L ++DG + ++ L +P DILD ALLR GR DR I
Sbjct: 469 ENTLNQMLVEMDGFTPADHVVVLAGTNRP---DILDKALLRPGRFDRHI 514
>gi|1710045|sp|P40341|RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN COMPLEXES ASSEMBLY PROTEIN RCA1
(TAT-BINDING HOMOLOG 12) >gi|1078319|pir||S54465 YTA12
protein precursor, mitochondrial - yeast (Saccharomyces
cerevisiae) >gi|807972|emb|CAA89236| (Z49259) Rca1p
[Saccharomyces cerevisiae]
Length = 825
Score = 78.8 bits (191), Expect = 1e-14
Identities = 48/107 (44%), Positives = 70/107 (64%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG-DHEV 151
F ++G + V+M++G GA VRD+FK A+E PSI+FIDEIDAIG R + +G + E
Sbjct: 409 FYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDER 468
Query: 150 QRTMLELLNQLDG-V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+ T+ ++L ++DG + ++ L +P DILD ALLR GR DR I
Sbjct: 469 ENTLNQMLVEMDGFTPADHVVVLAGTNRP---DILDKALLRPGRFDRHI 514
>gi|1346047|sp|P47695|FTSH_MYCGE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1361466|pir||E64250 cell
division protein ftsH - Mycoplasma genitalium (SGC3)
>gi|1046176 (U39732) cell division protein [Mycoplasma
genitalium] >gi|3845051 (U39727) cell division protein
(ftsH) [Mycoplasma genitalium]
Length = 702
Score = 78.8 bits (191), Expect = 1e-14
Identities = 45/108 (41%), Positives = 66/108 (60%), Gaps = 3/108 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + G M +G GA+ VRD+F AK+ P IIFIDEID++G+KR + + V+
Sbjct: 292 FFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVE 351
Query: 147 RTMLELLNQLDGV*SR---IIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+T+ +LL ++DG SR ++M +D+LD ALLR GR DR I+
Sbjct: 352 QTLNQLLAEMDGFTSRTGVVVM-----AATNRLDVLDDALLRPGRFDRHIQ 397
>gi|4505483|oth|NP_002524|PNVL nuclear VCP-like >gi|2406580 (U78772) nuclear VCP-like protein
NVLp.1 [Homo sapiens]
Length = 750
Score = 78.4 bits (190), Expect = 2e-14
Identities = 42/107 (39%), Positives = 68/107 (63%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ MY+G+ R VR VF+ AK P +IF DE+DA+ +RSD + TG
Sbjct: 537 FISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE-TG--ASV 593
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ +R ++ + DI+DPA+LR GR+D+ +
Sbjct: 594 RVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTL 638
Score = 63.2 bits (151), Expect = 6e-10
Identities = 38/106 (35%), Positives = 62/106 (57%), Gaps = 1/106 (0%)
Query: 324 LKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQR 145
LK+A P++V G+ + +R++F+ A P IIFIDEIDAI KR + + + +
Sbjct: 221 LKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVA 280
Query: 144 TMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+L ++ L+ V + ++ + +P D LDPAL R+GR DR+I
Sbjct: 281 QLLTCMDDLNNVAATARVLVIGATNRP---DSLDPALRRAGRFDREI 324
>gi|3721926|dbj|BAA33755| (AB017480) chloroplast FtsH protease [Nicotiana tabacum]
Length = 714
Score = 78.4 bits (190), Expect = 2e-14
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F A + V++++G GA VRD+F+ AK P I+FIDEIDA+G +R G+ E +
Sbjct: 314 FFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDERE 373
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG ++ L +P D+LD ALLR GR DR++
Sbjct: 374 QTINQLLTEMDGFSGNSGVIVLAATNRP---DVLDSALLRPGRFDRQV 418
>gi|2406565 (U68140) nuclear VCP-like protein NVLp.2 [Homo sapiens]
Length = 856
Score = 78.4 bits (190), Expect = 2e-14
Identities = 42/107 (39%), Positives = 68/107 (63%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ MY+G+ R VR VF+ AK P +IF DE+DA+ +RSD + TG
Sbjct: 643 FISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE-TG--ASV 699
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ +R ++ + DI+DPA+LR GR+D+ +
Sbjct: 700 RVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTL 744
Score = 63.2 bits (151), Expect = 6e-10
Identities = 38/106 (35%), Positives = 62/106 (57%), Gaps = 1/106 (0%)
Query: 324 LKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQR 145
LK+A P++V G+ + +R++F+ A P IIFIDEIDAI KR + + + +
Sbjct: 327 LKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVA 386
Query: 144 TMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+L ++ L+ V + ++ + +P D LDPAL R+GR DR+I
Sbjct: 387 QLLTCMDDLNNVAATARVLVIGATNRP---DSLDPALRRAGRFDREI 430
>gi|3878262|emb|CAB00040| (Z75712) similar to AAA ATPase; cDNA EST yk353e8.5 comes from this
gene [Caenorhabditis elegans]
Length = 724
Score = 78.4 bits (190), Expect = 2e-14
Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+L ++GD + +RD+F A++ P+I+F DEIDA+G+ R +G +
Sbjct: 521 FLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFDEIDAVGSSRGSEKSSGVSD-- 578
Query: 147 RTMLELLNQLDGV--*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LDG+ SR+I+ R D LD ALLR GR+DR I
Sbjct: 579 RVLAQLLTELDGLEKSSRVILLAATNRP----DQLDSALLRPGRLDRAI 623
>gi|2492507|sp|P71377|FTH1_HAEIN CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|1574793 (U32812) cell
division protein (ftsH) [Haemophilus influenzae Rd]
Length = 635
Score = 78.0 bits (189), Expect = 2e-14
Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P +IFIDEIDA+G +R G E +
Sbjct: 212 FFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDERE 271
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ ++L ++DG ++ + +P D+LDPAL R GR DR++
Sbjct: 272 QTLNQMLVEMDGFSGNDGVIVIAATNRP---DVLDPALTRPGRFDRQV 316
>gi|728820|sp|P39925|AFG3_YEAST AFG3 PROTEIN (TAT-BINDING HOMOLOG 10) >gi|626985|pir||S46611 YTA10
protein - yeast (Saccharomyces cerevisiae)
>gi|531750|emb|CAA56953| (X81066) probable mitochondrial
protein [Saccharomyces cerevisiae] >gi|603609 (U18778)
Afg3p [Saccharomyces cerevisiae]
Length = 761
Score = 78.0 bits (189), Expect = 2e-14
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG--DHE 154
FL ++G + V+M++G GA VRD+F A+ PSIIFIDEIDAIG +R G + E
Sbjct: 349 FLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDE 408
Query: 153 VQRTMLELLNQLDG-V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+ T+ +LL ++DG S ++ L +P D+LD AL+R GR DR I+
Sbjct: 409 REATLNQLLVEMDGFTTSDQVVVLAGTNRP---DVLDNALMRPGRFDRHIQ 456
>gi|2492512|sp|P73437|FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 3 >gi|1652556|dbj|BAA17477|
(D90906) cell division protein FtsH [Synechocystis sp.]
Length = 628
Score = 78.0 bits (189), Expect = 2e-14
Identities = 44/107 (41%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKR-SDSDRTGDHEV 151
F ++G + V++++G GA VRD+F+ AK+ P I+FIDE+DAIG R S + G+ E
Sbjct: 235 FFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGGNDER 294
Query: 150 QRTMLELLNQLDG--V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG ++ L +P + LDPALLR GR DR++
Sbjct: 295 EQTLNQLLTEMDGFSAAGATVIVLAATNRP---ETLDPALLRPGRFDRQV 341
>gi|2262118|gb|AAB63626| (AC002343) cell division protein isolog [Arabidopsis thaliana]
Length = 946
Score = 78.0 bits (189), Expect = 2e-14
Identities = 50/107 (46%), Positives = 71/107 (65%), Gaps = 10/107 (9%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKR-----SDSDR-- 169
F ++AG + V++ +G G+ +RD+FK AK KPS+IFIDEIDA+ T+R +SD+
Sbjct: 491 FYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKENSDQLY 550
Query: 168 -TGDHEVQRTMLELLNQLDG--V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
E + T+ +LL +LDG +I R+ D+LDPALLR GR DRKI
Sbjct: 551 NAATQERETTLNQLLIELDGFDTGKGVIFLGATNRR----DLLDPALLRPGRFDRKI 603
>gi|3461848 (AC005315) putative ATPase [Arabidopsis thaliana]
Length = 807
Score = 77.6 bits (188), Expect = 3e-14
Identities = 46/107 (42%), Positives = 67/107 (61%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL ++G ++M++G G VR +F+ A++ PSIIFIDEIDAIG R G+ E +
Sbjct: 381 FLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGNDERE 440
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
T+ +LL ++DG + ++ L +P DILD ALLR GR DR+I
Sbjct: 441 STLNQLLVEMDGFGTTAGVVVLAGTNRP---DILDKALLRPGRFDRQI 485
>gi|2649281 (AE001014) cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus]
Length = 733
Score = 77.6 bits (188), Expect = 3e-14
Identities = 45/108 (41%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ ++GP+++ Y G+ + +R++F+ AKE PSIIFIDEID+I KR + TG+ E +
Sbjct: 244 FIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEV--TGEVE-R 300
Query: 147 RTMLELLNQLDGV*SR-IIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ +R ++ + +P D +DPAL R GR DR+IE
Sbjct: 301 RVVAQLLALMDGLEARGDVIVIAATNRP---DAIDPALRRPGRFDREIE 346
Score = 71.4 bits (172), Expect = 2e-12
Identities = 38/107 (35%), Positives = 69/107 (63%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGD-HEV 151
F+ + GP+L+ ++G+ + VR++F+ A++ P +IF DEID++ +R GD H
Sbjct: 517 FISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGG---IGDSHVT 573
Query: 150 QRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+R + +LL +LDG+ + ++ + +P D++DPALLR GR++R I
Sbjct: 574 ERVVSQLLTELDGLEELKDVVVIAATNRP---DMIDPALLRPGRLERHI 619
>gi|2622767 (AE000923) cell division control protein Cdc48 [Methanobacterium
thermoautotrophicum]
Length = 732
Score = 77.3 bits (187), Expect = 3e-14
Identities = 43/108 (39%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEV- 151
F+ + GP+L+ ++G+ + VR+VF+ A++ P++IF DEID+I + RS S T D V
Sbjct: 539 FIAVKGPELLSKWVGESEKGVREVFRKARQTAPTVIFFDEIDSIASVRSGS--TADSGVT 596
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
QR + +LL ++DG+ + + + DILDPALLR GR DR ++
Sbjct: 597 QRVVNQLLTEIDGL--EELQDVAVIAATNRPDILDPALLRPGRFDRHVK 643
Score = 76.5 bits (185), Expect = 6e-14
Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ Y+G +R+ F+ A+E PSIIFIDEIDAI KR D +G+ E +
Sbjct: 267 FIAINGPEIMSKYVGGSEERLREFFEEAEENAPSIIFIDEIDAIAPKREDV--SGEVE-R 323
Query: 147 RTMLELLNQLDGV*SR-IIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ SR ++ + +P D LDPAL R GR DR+IE
Sbjct: 324 RIVAQLLTLMDGLKSRGQVVVIGATNRP---DALDPALRRPGRFDREIE 369
>gi|3257095|dbj|BAA29778| (AP000003) 840aa long hypothetical cell division control protein
(transitional endoplasmic reticulum ATPase) [Pyrococcus
horikoshii]
Length = 840
Score = 77.3 bits (187), Expect = 3e-14
Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ ++G+ + +R++F+ A++ P+IIFIDEIDAI R S+ G+
Sbjct: 609 FIAVRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPARGTSE--GEKVTD 666
Query: 147 RTMLELLNQLDG-V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG V + ++ + +P DILDPALLR GR DR I
Sbjct: 667 RIINQLLTEMDGLVENSGVVVIAATNRP---DILDPALLRPGRFDRLI 711
Score = 74.5 bits (180), Expect = 2e-13
Identities = 45/108 (41%), Positives = 66/108 (60%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ Y G+ +R++FK A+E P+IIFIDEIDAI KR + G+ E +
Sbjct: 274 FIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEV--VGEVE-K 330
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R K+ + D LDPAL R GR DR+IE
Sbjct: 331 RVVSQLLTLMDGLKGR--GKVIVIGATNRPDALDPALRRPGRFDREIE 376
>gi|2688712 (AE001177) cell division protein (ftsH) [Borrelia burgdorferi]
Length = 639
Score = 76.5 bits (185), Expect = 6e-14
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F A++ P IIFIDE+DA+G R G E +
Sbjct: 233 FFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPCIIFIDELDAVGRSRGAGLGGGHDERE 292
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + ++ + +P D+LD ALLR GR DR++
Sbjct: 293 QTLNQLLVEMDGFGTHTNVIVMAATNRP---DVLDSALLRPGRFDRQV 337
>gi|1916752 (U78072) VCP-like ATPase [Thermoplasma acidophilum]
Length = 745
Score = 76.5 bits (185), Expect = 6e-14
Identities = 37/107 (34%), Positives = 68/107 (62%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ ++G+ + +R++FK AK+ P+I+F+DEID+I +R + +G +
Sbjct: 529 FISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSG--VTE 586
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL LDG+ ++ + + DI+DPALLR+GR D+ I
Sbjct: 587 RIVNQLLTSLDGI--EVMNGVVVIGATNRPDIMDPALLRAGRFDKLI 631
Score = 74.1 bits (179), Expect = 3e-13
Identities = 44/108 (40%), Positives = 65/108 (59%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+++ Y G + +R++F A+E PSIIFIDEID+I KR + G+ E +
Sbjct: 252 FLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEVQ--GEVE-R 308
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R + + ID +DPAL R GR DR+IE
Sbjct: 309 RVVAQLLTLMDGMKER--GHVIVIGATNRIDAIDPALRRPGRFDREIE 354
>gi|4105619 (AF049099) SPAF [Mus musculus]
Length = 892
Score = 76.5 bits (185), Expect = 6e-14
Identities = 40/107 (37%), Positives = 63/107 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+L+ Y+G+ R VR++F+ A+ PSIIF DE+DA+ +R S G +
Sbjct: 688 FLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAG-NVAD 746
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ + + + D +D AL+R GRIDR I
Sbjct: 747 RVLAQLLTEMDGI--EQLKNVTVLAATNRPDRIDKALMRPGRIDRII 791
Score = 54.3 bits (128), Expect = 3e-07
Identities = 35/103 (33%), Positives = 58/103 (55%), Gaps = 2/103 (1%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLE 133
GP+++ + G+ +R +F A PSIIFIDE+DA+ KR + + V ++L
Sbjct: 419 GPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLT 478
Query: 132 LLNQL--DGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
L++ + +G R+++ L +P LD AL R GR D++IE
Sbjct: 479 LMDGIGSEGSEGRVLV-LGATNRP---QALDAALRRPGRFDKEIE 519
>gi|3218522|emb|CAA19646| (AL023874) 1-evidence=predicted by content;
1-method=genefinder;084; 1-method_score=143.99;
1-evidence_end; 2-evidence=predicted by motif;
2-match_accession=PROSITE:PS00017;
2-match_description=ATP/GTP-binding site motif A (P-l...
Length = 819
Score = 76.1 bits (184), Expect = 8e-14
Identities = 48/107 (44%), Positives = 69/107 (63%), Gaps = 5/107 (4%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG---DH 157
FL + G + ++M G GA VRD+FK K+ P II+IDEIDAIG +RS ++ G
Sbjct: 402 FLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAIGRQRSGTESMGQGSSG 461
Query: 156 EVQRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
E ++T+ +LL ++DG+ ++ ++M R DILD ALLR GR DR I
Sbjct: 462 ESEQTLNQLLVEMDGMATKEGVLMLASTNR----ADILDKALLRPGRFDRHI 509
>gi|3860613|emb|CAA14514| (AJ235270) CELL DIVISION PROTEIN FTSH (ftsH) [Rickettsia
prowazekii]
Length = 637
Score = 76.1 bits (184), Expect = 8e-14
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ K P IIFIDEIDA+G R G+ E +
Sbjct: 216 FFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDERE 275
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ ++L ++DG + ++ + +P D+LD ALLR GR DR+I
Sbjct: 276 QTLNQMLVEMDGFEANEGVVIIAATNRP---DVLDRALLRPGRFDRQI 320
>gi|1770214|emb|CAA67594| (X99207) smallminded [Drosophila melanogaster]
Length = 943
Score = 75.3 bits (182), Expect = 1e-13
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ MY+G+ R VR F+ A+ P +IF DE D++ KRSD G++
Sbjct: 723 FISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGG-DGNNSGT 781
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRID 16
R + +LL ++DGV R + L +P DI+DPA+LR GR+D
Sbjct: 782 RIVNQLLTEMDGVEERKGVYILAATNRP---DIIDPAILRPGRLD 823
Score = 50.8 bits (119), Expect = 3e-06
Identities = 30/106 (28%), Positives = 52/106 (48%)
Query: 324 LKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQR 145
+++ +L+ G+ +R+VF A P ++FIDEIDAIG R + + + +
Sbjct: 312 MEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVS 371
Query: 144 TMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++ L+ L + + + T D+LDP L R GR D +I
Sbjct: 372 QLISSLDNLKA--NEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEI 415
>gi|2492514|sp|Q39102|FTSH_ARATH CELL DIVISION PROTEIN FTSH HOMOLOG PRECURSOR
>gi|1483215|emb|CAA68141| (X99808) chloroplast FtsH
protease [Arabidopsis thaliana]
Length = 709
Score = 75.3 bits (182), Expect = 1e-13
Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 306 QLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELL 127
+ V++++G GA VRD+F+ AK P I+FIDEIDA+G +R G+ E ++T+ +LL
Sbjct: 330 EFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLL 389
Query: 126 NQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++DG ++ L +P D+LD ALLR GR DR++
Sbjct: 390 TEMDGFSGNSGVIVLAATNRP---DVLDSALLRPGRFDRQV 427
>gi|1066063 (U39304) P26s4 [Cricetinae gen. sp.]
Length = 143
Score = 75.3 bits (182), Expect = 1e-13
Identities = 33/55 (60%), Positives = 46/55 (83%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG 163
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G
Sbjct: 89 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGG 143
>gi|2077957|emb|CAA73318| (Y12780) ATPase [Arabidopsis thaliana]
Length = 634
Score = 74.9 bits (181), Expect = 2e-13
Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F A + V++++G GA VRD+F+ AK P I+FID +DA+G +R G+ E +
Sbjct: 255 FFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDRVDAVGRQRGAGMGGGNDERE 314
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG ++ L +P D+LD ALLR G+ DR++
Sbjct: 315 QTINQLLTEMDGFSGNSGVIVLAATNRP---DVLDSALLRPGKFDRQV 359
>gi|2648442 (AE000959) cell division control protein 48, AAA family (cdc48-2)
[Archaeoglobus fulgidus]
Length = 811
Score = 74.9 bits (181), Expect = 2e-13
Identities = 44/108 (40%), Positives = 68/108 (62%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ + G+ + +R++F+ AKE PSIIFIDEID+I KR + TG+ E +
Sbjct: 259 FFTINGPEIMSKFYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEV--TGEVE-R 315
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + ID +DPAL R GR DR+IE
Sbjct: 316 RVVAQLLTLMDGLEER--GQVIVIGATNRIDAVDPALRRPGRFDREIE 361
Score = 71.8 bits (173), Expect = 1e-12
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + G Q++ ++G+ + VR +F+ A++ P IIF DEIDAI R + G V+
Sbjct: 596 FISIKGGQILSKWLGESEKAVRKIFRKARQVAPCIIFFDEIDAIAQMRGIDE--GSRAVE 653
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ ++ + +P DILDPALLR GR DR +
Sbjct: 654 RVLNQLLTEMDGLEELHGVVVIGATNRP---DILDPALLRPGRFDRMV 698
>gi|2492504|sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|1669660|emb|CAA70565|
(Y09396) protein of AAA family [Capsicum annuum]
Length = 805
Score = 74.1 bits (179), Expect = 3e-13
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I T+R S
Sbjct: 543 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGAAD 602
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ + + + + +P DI+DPALLR GR+D+ I
Sbjct: 603 RVLNQLLTEMDGMNAKKTVFIIGATNRP---DIIDPALLRPGRLDQLI 647
Score = 63.2 bits (151), Expect = 6e-10
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ PSIIFIDEID+I KR ++T +
Sbjct: 270 FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR---EKTHGEVER 326
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ SR ++ + +P I DPAL R GR DR+I+
Sbjct: 327 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREID 372
>gi|2492515|sp|Q39444|FTSH_CAPAN CELL DIVISION PROTEIN FTSH HOMOLOG PRECURSOR
>gi|2129924|pir||S58298 ATPase - pepper (fragment)
>gi|929013|emb|CAA62084| (X90472) ATPase [Capsicum
annuum]
Length = 662
Score = 73.7 bits (178), Expect = 4e-13
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F A + V++++G GA VR +F+ AK P I+FIDEIDA+G +R G+ E +
Sbjct: 291 FFSCAASEFVELFVGVGASRVRHLFENAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDERE 350
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG ++ L +P D+LD ALLR G+ DR++
Sbjct: 351 QTINQLLTEMDGFSGNSGVIVLAATNRP---DVLDSALLRPGKFDRQV 395
>gi|2492506|sp|Q13608|PEX6_HUMAN PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXISOMAL-TYPE ATPASE 1)
(PEROXIN-6) >gi|2135899|pir||S71090 peroxisome biogenesis
disorder group 4 protein PXAAA1 - human >gi|1354753
(U56602) Pxaaa1p [Homo sapiens]
Length = 980
Score = 73.4 bits (177), Expect = 5e-13
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+L+ MY+G VR+VF A+ P IIF DE+D++ R S +G +
Sbjct: 765 FLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGG-VMD 823
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LDG+ S + + + +P D+LDPALLR GR D+ +
Sbjct: 824 RVVSQLLAELDGLHSTQDVFVIGATNRP---DLLDPALLRPGRFDKLV 868
>gi|4505729|oth|NP_000278|PPEX6 peroxisomal biogenesis factor 6 >gi|1747316|dbj|BAA12069| (D83703)
peroxisome assembly factor-2 [Homo sapiens]
Length = 980
Score = 73.4 bits (177), Expect = 5e-13
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+L+ MY+G VR+VF A+ P IIF DE+D++ R S +G +
Sbjct: 765 FLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGG-VMD 823
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LDG+ S + + + +P D+LDPALLR GR D+ +
Sbjct: 824 RVVSQLLAELDGLHSTQDVFVIGATNRP---DLLDPALLRPGRFDKLV 868
>gi|1709557|sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXISOMAL-TYPE ATPASE 1)
(PEROXIN-6) >gi|1127034|dbj|BAA09824| (D63673) peroxisome
assembly factor-2 [Rattus norvegicus]
>gi|1586820|prf||2204387A peroxisome assembly factor 2
[Rattus norvegicus]
Length = 978
Score = 73.4 bits (177), Expect = 5e-13
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+L+ MY+G VR+VF A+ P IIF DE+D++ R S +G +
Sbjct: 763 FLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGG-VMD 821
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LDG+ S + + + +P D+LDPALLR GR D+ +
Sbjct: 822 RVVSQLLAELDGLHSTQDVFVIGATNRP---DLLDPALLRPGRFDKLV 866
>gi|2911135|dbj|BAA24931| (D89660) peroxisome assembly factor-2 [Rattus norvegicus]
Length = 978
Score = 73.4 bits (177), Expect = 5e-13
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+L+ MY+G VR+VF A+ P IIF DE+D++ R S +G +
Sbjct: 763 FLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGG-VMD 821
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LDG+ S + + + +P D+LDPALLR GR D+ +
Sbjct: 822 RVVSQLLAELDGLHSTQDVFVIGATNRP---DLLDPALLRPGRFDKLV 866
>gi|1705678|sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG (VALOSIN CONTAINING PROTEIN
HOMOLOG) (VCP) >gi|862480 (U20213) valosin-containing
protein [Glycine max]
Length = 807
Score = 73.0 bits (176), Expect = 7e-13
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I T+R S
Sbjct: 543 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAAD 602
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ + + + + +P DI+DPALLR GR+D+ I
Sbjct: 603 RVLNQLLTEMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQLI 647
Score = 63.2 bits (151), Expect = 6e-10
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ PSIIFIDEID+I KR ++T +
Sbjct: 270 FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR---EKTHGEVER 326
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ SR ++ + +P I DPAL R GR DR+I+
Sbjct: 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREID 372
>gi|4507173|oth|NP_003110|PSPG7 spastic paraplegia 7, paraplegin (pure and complicated autosomal
recessive) >gi|3273089|emb|CAA76314| (Y16610) paraplegin
[Homo sapiens]
Length = 795
Score = 73.0 bits (176), Expect = 7e-13
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDS-DRTGDHEV 151
FL +AGP+ V++ G GA VR +FK A+ P I++IDEIDA+G KRS + + E
Sbjct: 370 FLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEE 429
Query: 150 QRTMLELLNQLDGV*S--RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG+ + +I+ R DILD AL+R GR+DR +
Sbjct: 430 EQTLNQLLVEMDGMGTTDHVIVLASTNR----ADILDGALMRPGRLDRHV 475
>gi|416590|sp|P32794|AFG2_YEAST AFG2 PROTEIN >gi|481664|pir||S39110 valosin-containing protein
homolog AFG2 - yeast (Saccharomyces cerevisiae)
>gi|295573 (L14615) AFG2 [Saccharomyces cerevisiae]
>gi|625113 (U19729) Afg2p [Saccharomyces cerevisiae]
Length = 780
Score = 73.0 bits (176), Expect = 7e-13
Identities = 40/107 (37%), Positives = 61/107 (56%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP++ Y+G+ R +R++F+ A+ PSIIF DEIDA+ R S + + V
Sbjct: 578 FLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGSSTSAANHV- 636
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+ LLN++DGV + + + D +D ALLR GR+DR I
Sbjct: 637 --LTSLLNEIDGV--EELKGVVIVAATNRPDEIDAALLRPGRLDRHI 679
Score = 67.9 bits (163), Expect = 2e-11
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 324 LKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQR 145
L + GP +V Y+G+ +RD+F A++ +PSIIFIDEID+I R++ D +G+ E R
Sbjct: 308 LTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDD-SGEVE-SR 365
Query: 144 TMLELLNQLDGV*SR-IIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+ LL +DG+ + ++ + +P + DPAL R GR D+++E
Sbjct: 366 VVATLLTLMDGMGAAGKVVVIAATNRPNSV---DPALRRPGRFDQEVE 410
>gi|2467272|emb|CAB16902| (Z99759) hypothetical protein [Schizosaccharomyces pombe]
Length = 779
Score = 73.0 bits (176), Expect = 7e-13
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ Y+G+ R VR VF A+ P +IF DE+DA+ +R DS V
Sbjct: 554 FISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEASSRVV 613
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
T LL +LDG+ R + + +P DI+DPA+LR GR+D+ +
Sbjct: 614 NT---LLTELDGLSDRSGVYVIAATNRP---DIIDPAMLRPGRLDKTL 655
Score = 60.9 bits (145), Expect = 3e-09
Identities = 35/107 (32%), Positives = 60/107 (55%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ ++ P +V G+ + VR+VF+ AK P ++FIDEIDA+ KR + R + +
Sbjct: 236 FISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIV 295
Query: 147 RTMLELLNQL--DGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
L +++L + + ++ + +P D LD AL R+GR DR+I
Sbjct: 296 AQFLTCMDELSFEKTDGKPVLVIGATNRP---DSLDSALRRAGRFDREI 341
>gi|642339|emb|CAA58229| (X83226) peroxisome biogenesis invlved proteind [Saccharomyces
cerevisiae]
Length = 889
Score = 72.2 bits (174), Expect = 1e-12
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+L+ MYIG+ VR VF+ A+E KP +IF DEID++ KR + +G +
Sbjct: 652 FFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGG-VMD 710
Query: 147 RTMLELLNQLDGV*SRI--IMKLRL*RQPTXIDILDPALLRSGRIDR 13
R + +LL +LDG+ + + + +P D+LD ALLR GR D+
Sbjct: 711 RIVSQLLAELDGMSTDADGVFVIGATNRP---DLLDEALLRPGRFDK 754
>gi|3219842|sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|2370473|emb|CAB11501| (Z98849) putative
peroxin-6, AAA family atpase [Schizosaccharomyces pombe]
Length = 948
Score = 72.2 bits (174), Expect = 1e-12
Identities = 38/107 (35%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ MY+G+ VR+VF+ A+ P +IF DE+D+I R +S +G + +
Sbjct: 716 FVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSG-NVMD 774
Query: 147 RTMLELLNQLDGV---*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LD + ++ + + +P D+LDP+LLR GR D+ +
Sbjct: 775 RVVSQLLAELDSISKDNNKYVFVIGATNRP---DLLDPSLLRPGRFDKLV 821
>gi|464348|sp|P33760|PEX6_YEAST PEROXISOME BIOSYNTHESIS PROTEIN PAS8 (PEROXIN-6)
>gi|539317|pir||S43211 probable ATP-binding protein PAS8
- yeast (Saccharomyces cerevisiae) >gi|393287 (L20789)
PAS8 [Saccharomyces cerevisiae] >gi|633657|emb|CAA86369|
(Z46259) PAS8 gene [Saccharomyces cerevisiae]
>gi|1302449|emb|CAA96261| (Z71605) ORF YNL329c
[Saccharomyces cerevisiae]
Length = 1030
Score = 72.2 bits (174), Expect = 1e-12
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+L+ MYIG+ VR VF+ A+E KP +IF DEID++ KR + +G +
Sbjct: 793 FFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGG-VMD 851
Query: 147 RTMLELLNQLDGV*SRI--IMKLRL*RQPTXIDILDPALLRSGRIDR 13
R + +LL +LDG+ + + + +P D+LD ALLR GR D+
Sbjct: 852 RIVSQLLAELDGMSTDADGVFVIGATNRP---DLLDEALLRPGRFDK 895
>gi|3136033|emb|CAA19064| (AL023590) putative metallopeptidase [Schizosaccharomyces pombe]
Length = 709
Score = 71.8 bits (173), Expect = 1e-12
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G Q +MY+G GA+ VR++F A++ PSIIFIDE+DAIG KR+ D ++
Sbjct: 328 FFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAA---HMR 384
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL LDG + + + LDPAL R GR DR I
Sbjct: 385 QTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHI 433
>gi|4505725|oth|NP_000457|PPEX1 peroxisome biogenesis factor 1 >gi|2655141 (AF026086) peroxisome
biogenesis disorder protein 1 [Homo sapiens] >gi|2827156
(AF030356) peroxisome biogenesis gene 1 [Homo sapiens]
Length = 1283
Score = 71.0 bits (171), Expect = 3e-12
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ YIG + VRD+F A+ KP I+F DE ++I +R D TG
Sbjct: 902 FISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRG-HDNTG--VTD 958
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDR 13
R + +LL QLDGV + + + + D++DPALLR GR+D+
Sbjct: 959 RVVNQLLTQLDGV--EGLQGVYVLAATSRPDLIDPALLRPGRLDK 1001
>gi|3169060|emb|CAA19256| (AL023704) putative peroxisome biosynthesis protein
[Schizosaccharomyces pombe]
Length = 937
Score = 71.0 bits (171), Expect = 3e-12
Identities = 40/107 (37%), Positives = 63/107 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ YIG + VRD+F A+ KP ++F DE D++ +R D TG
Sbjct: 668 FISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRG-QDSTG--VTD 724
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L Q+DG S + + + T D++DPALLR GR+D+ I
Sbjct: 725 RVVNQILTQMDGAES--LDGVYIVAATTRPDMIDPALLRPGRLDKLI 769
>gi|1669371 (AC000064) ATPase; strong similarity to peroxisome biosynthesis
protein PAS1 (PID:g1172019); coded for by human cDNA
C04279 (NID:g1467530) [Homo sapiens]
Length = 541
Score = 71.0 bits (171), Expect = 3e-12
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ YIG + VRD+F A+ KP I+F DE ++I +R D TG
Sbjct: 215 FISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRG-HDNTG--VTD 271
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDR 13
R + +LL QLDGV + + + + D++DPALLR GR+D+
Sbjct: 272 RVVNQLLTQLDGV--EGLQGVYVLAATSRPDLIDPALLRPGRLDK 314
>gi|2492505|sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ1156
>gi|2118117|pir||C64444 cell division control protein
CDC48 homolog - Methanococcus jannaschii >gi|1591785
(U67557) cell division control protein 48 (cdc48), AAA
family [Methanococcus jannaschii]
Length = 903
Score = 71.0 bits (171), Expect = 3e-12
Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP++ ++G+ + +R++F+ A++ P IIF DEIDAI KR
Sbjct: 514 FISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRD--LSSAVTD 571
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+ + +LL +LDG+ + ++ + +P DI+DPALLR GR+DR I
Sbjct: 572 KVVNQLLTELDGMEEPKDVVVIAATNRP---DIIDPALLRPGRLDRVI 616
Score = 71.0 bits (171), Expect = 3e-12
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ Y+G+ +R +F+ A+E PSIIFIDEIDAI KR ++ TG+ E +
Sbjct: 241 FYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEA--TGEVE-R 297
Query: 147 RTMLELLNQLDGV*SR-IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +DG+ R ++ + +P + LDPAL R GR DR+I
Sbjct: 298 RLVAQLLTLMDGLKGRGQVVVIGATNRP---NALDPALRRPGRFDREI 342
>gi|3191980|emb|CAA19379| (AL023797) cell division protein FtsH homolog [Streptomyces
coelicolor]
Length = 648
Score = 69.9 bits (168), Expect = 6e-12
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDH-EV 151
F + + ++M +G GA VR++F A++ PSIIFIDEID IG R TG H E
Sbjct: 264 FFSASASEFIEMIVGVGASRVRELFAEARKVAPSIIFIDEIDTIGRARGGGSGTGGHDER 323
Query: 150 QRTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ ++L ++DG S ++ + DILD AL R GR DR +
Sbjct: 324 EQTLNQILTEMDGFSGSEGVIVI---AATNRADILDAALTRPGRFDRVV 369
>gi|1168856|sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATPASE >gi|552189 (M96757) cell
division cycle ATPase [Plasmodium falciparum]
Length = 709
Score = 69.5 bits (167), Expect = 7e-12
Identities = 42/103 (40%), Positives = 63/103 (60%), Gaps = 1/103 (0%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLE 133
GP+++ +IG+ + +R +FK A E P IIFIDEID+I KRS S+ + +R + +
Sbjct: 216 GPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSNNELE---KRVVSQ 272
Query: 132 LLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
LL +DG+ + ++ L +P I DPAL R GR DR+IE
Sbjct: 273 LLTLMDGLKKNNNVLVLAATNRPNSI---DPALRRFGRFDREIE 313
Score = 55.4 bits (131), Expect = 1e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VRD+F A+ P IIF DEID++ +R+ + T +
Sbjct: 618 FISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSN--TNNDASD 675
Query: 147 RTMLELLNQLDGV 109
R + ++L ++DG+
Sbjct: 676 RVINQILTEIDGI 688
>gi|1174638|sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) >gi|104084|pir||S19738
transitional endoplasmic reticulum ATPase - African
clawed frog >gi|64966|emb|CAA38146| (X54240) p97 subunit
of 15S Mg(2+)- ATPase [Xenopus laevis]
Length = 805
Score = 68.7 bits (165), Expect = 1e-11
Identities = 34/107 (31%), Positives = 61/107 (56%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I R + G
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ I + + DI+DPA+LR GR+D+ I
Sbjct: 599 RVINQILTEMDGM--SIKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 61.3 bits (146), Expect = 2e-09
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDE+DAI KR ++T +
Sbjct: 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +P I DPAL R GR DR+++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSI---DPALRRFGRFDREVD 368
>gi|3413700 (AC004747) putative YME1 protein [Arabidopsis thaliana]
Length = 627
Score = 68.7 bits (165), Expect = 1e-11
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +G + +M++G GAR VRD+F AK+ P IIFIDEIDAIG R+ D+ ++
Sbjct: 198 FFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSRNPKDQ---QYMK 254
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
T+ ++L +LDG + I+ + P + LD AL+R GR DR I
Sbjct: 255 MTLNQMLVELDGFKQNEGIIVVAATNFP---ESLDKALVRPGRFDRHI 299
>gi|1817701|emb|CAB06575| (Z84724) hypothetical protein Rv0435c [Mycobacterium tuberculosis]
Length = 728
Score = 68.7 bits (165), Expect = 1e-11
Identities = 36/102 (35%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLE 133
G +L+ ++G + VR++F+ A++ PS++F+DE+DA+ +R S +G + R +
Sbjct: 531 GSELMDKWVGSSEKAVRELFRRARDSAPSLVFLDELDALAPRRGQSFDSGVSD--RVVAA 588
Query: 132 LLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
LL +LDG+ R ++ L +P D++DPALLR GR++R +
Sbjct: 589 LLTELDGIDPLRDVVMLGATNRP---DLIDPALLRPGRLERLV 628
>gi|2492526|sp|Q07844|YL34_YEAST HYPOTHETICAL 93.1 KD PROTEIN YLL034C >gi|2131732|pir||S64785
hypothetical protein YLL034c - yeast (Saccharomyces
cerevisiae) >gi|1360222|emb|CAA97483| (Z73139) ORF
YLL034c [Saccharomyces cerevisiae]
Length = 837
Score = 68.7 bits (165), Expect = 1e-11
Identities = 39/107 (36%), Positives = 61/107 (56%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ Y+G+ R +R VF A+ P +IF DE+DA+ +R S V
Sbjct: 595 FISIKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELDALVPRRDTSLSESSSRVV 654
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
T LL +LDG+ R I + +P D++DPA+LR GR+D+ +
Sbjct: 655 NT---LLTELDGLNDRRGIFVIGATNRP---DMIDPAMLRPGRLDKSL 696
Score = 53.5 bits (126), Expect = 5e-07
Identities = 36/107 (33%), Positives = 61/107 (56%), Gaps = 6/107 (5%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ ++ P +V G+ + +RD+F A+ P ++F DEIDAI KR D E++
Sbjct: 267 FISISAPSVVSGMSGESEKKIRDLFDEARSLAPCLVFFDEIDAITPKR---DGGAQREME 323
Query: 147 RTML-ELLNQLDGV-----*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R ++ +LL +D + + ++ + +P D LD AL R+GR DR+I
Sbjct: 324 RRIVAQLLTSMDELTMEKTNGKPVIIIGATNRP---DSLDAALRRAGRFDREI 373
>gi|539079|pir||A48667 peroxisomal assembly protein 5 - yeast (Pichia pastoris)
Length = 1165
Score = 68.3 bits (164), Expect = 2e-11
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+L+ MYIG+ VR VF+ A++ KP ++F DE+D++ KR + +G +
Sbjct: 880 FFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSGG-VMD 938
Query: 147 RTMLELLNQLDGV*SRI----IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LDG+ + + +P D+LD ALLR GR D+ +
Sbjct: 939 RIVSQLLAELDGMSGGDGGDGVFVVGATNRP---DLLDEALLRPGRFDKML 986
>gi|464347|sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS5 (PEROXIN-6)
>gi|396147|emb|CAA80278| (Z22556) PAS5 [Pichia pastoris]
Length = 1165
Score = 68.3 bits (164), Expect = 2e-11
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHE-- 154
F + GP+L+ MYIG+ VR VF+ A++ KP ++F DE+D++ KR + GD E
Sbjct: 880 FFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQ---GDSEGV 936
Query: 153 VQRTMLELLNQLDGV*SRI----IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+ R + +LL +LDG+ + + +P D+LD ALLR GR D+ +
Sbjct: 937 MDRIVSQLLAELDGMSGGDGGDGVFVVGATNRP---DLLDEALLRPGRFDKML 986
>gi|1174636|sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) [CONTAINS: VALOSIN (PEPTIDE VQY)] >gi|164726
(M30143) valosin-containing protein [Sus scrofa]
Length = 806
Score = 68.3 bits (164), Expect = 2e-11
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I R + G
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 599 RVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 61.3 bits (146), Expect = 2e-09
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDE+DAI KR ++T +
Sbjct: 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +P I DPAL R GR DR+++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSI---DPALRRFGRFDREVD 368
>gi|400712|sp|Q01853|TERA_MOUSE TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) >gi|284979|pir||S25197 transitional endoplasmic
reticulum ATPase - mouse >gi|55217|emb|CAA78412|
(Z14044) murine valosin-containing protein [Mus
musculus]
Length = 806
Score = 68.3 bits (164), Expect = 2e-11
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I R + G
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 599 RVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 61.3 bits (146), Expect = 2e-09
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDE+DAI KR ++T +
Sbjct: 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +P I DPAL R GR DR+++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSI---DPALRRFGRFDREVD 368
>gi|2144498|pir||VPPG transitional endoplasmic reticulum ATPase - pig
>gi|225450|prf||1303334A valosin precursor [Sus scrofa
domestica]
Length = 806
Score = 68.3 bits (164), Expect = 2e-11
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I R + G
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 599 RVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 61.3 bits (146), Expect = 2e-09
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDE+DAI KR ++T +
Sbjct: 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +P I DPAL R GR DR+++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSI---DPALRRFGRFDREVD 368
>gi|1174637|sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) >gi|1083817|pir||A55190 transitional endoplasmic
reticulum ATPase - rat >gi|641973 (U11760) transitional
endoplasmic reticulum ATPase [Rattus norvegicus]
>gi|1093322|prf||2103265A transitional endoplasmic
reticulum ATPase [Rattus norvegicus]
Length = 806
Score = 68.3 bits (164), Expect = 2e-11
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I R + G
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 599 RVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 61.3 bits (146), Expect = 2e-09
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDE+DAI KR ++T +
Sbjct: 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +P I DPAL R GR DR+++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSI---DPALRRFGRFDREVD 368
>gi|2984586 (AC004472) TERA_HUMAN [Homo sapiens]
Length = 806
Score = 68.3 bits (164), Expect = 2e-11
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I R + G
Sbjct: 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 599 RVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 61.3 bits (146), Expect = 2e-09
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDE+DAI KR ++T +
Sbjct: 266 FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +P I DPAL R GR DR+++
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSI---DPALRRFGRFDREVD 368
>gi|548460|sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN PAY4 (PEROXIN-6)
>gi|1078611|pir||A53121 peroxisome assembly protein PAY4
- yeast (Yarrowia lipolytica) >gi|393291 (L23858) ATPase
[Yarrowia lipolytica]
Length = 1025
Score = 68.3 bits (164), Expect = 2e-11
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+L+ MYIG+ VR VF+ A++ KP ++F DE+D++ +R + +G +
Sbjct: 781 FFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVVFFDELDSVAPQRRNQGDSGG-VMD 839
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL +LDG+ + + + D+LD ALLR GR D+ +
Sbjct: 840 RIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKML 886
>gi|1705677|sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|2118115|pir||S60112 cell
division control protein CDC48 homolog - Arabidopsis
thaliana >gi|1019904 (U37587) cell division cycle
protein [Arabidopsis thaliana]
Length = 809
Score = 67.9 bits (163), Expect = 2e-11
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKR-SDSDRTGDHEV 151
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I T+R S G
Sbjct: 542 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAA 601
Query: 150 QRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ + + + + +P DI+D ALLR GR+D+ I
Sbjct: 602 DRVLNQLLTEMDGMNAKKTVFIIGATNRP---DIIDSALLRPGRLDQLI 647
Score = 64.0 bits (153), Expect = 3e-10
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ PSIIFIDEID+I KR ++T +
Sbjct: 269 FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR---EKTNGEVER 325
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ SR ++ + +P I DPAL R GR DR+I+
Sbjct: 326 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREID 371
>gi|2853003|gb|AAC02215| (AF044488) valosin-containing protein homolog [Trypanosoma brucei]
Length = 780
Score = 67.1 bits (161), Expect = 4e-11
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VRDVF A+ P ++F DE+D++ R S G +
Sbjct: 528 FISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVARSRGHSGDGGASD-- 585
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ S+ + + D+LDPA++R GR+D+ I
Sbjct: 586 RVINQILTEMDGMNSK--KNVFIIGATNRPDVLDPAVMRPGRLDQLI 630
Score = 58.6 bits (139), Expect = 1e-08
Identities = 36/108 (33%), Positives = 58/108 (53%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R+ F +++ P+IIFIDEID+I KR + + +
Sbjct: 255 FFLINGPEIMSKMAGESEGNLRNAFVESEKNAPAIIFIDEIDSIAPKREKAQGEVEKRIV 314
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+L L++ L G I+M +P I DPAL R GR DR+I+
Sbjct: 315 SQLLTLMDGLKGRSQVIVMAAT--NRPNAI---DPALRRFGRFDREID 357
>gi|1729898|sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 (P97/CDC48
HOMOLOG 2)
Length = 637
Score = 67.1 bits (161), Expect = 4e-11
Identities = 35/107 (32%), Positives = 60/107 (55%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VRDVF A+ P ++F DE+D+I R S
Sbjct: 371 FISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAAD 430
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 431 RVINQVLTEMDGMNAK--KNVFIIGATNRPDIIDPAVLRPGRLDQLI 475
Score = 54.7 bits (129), Expect = 2e-07
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F ++ P+I+FIDEIDAI KR + G+ E +
Sbjct: 98 FFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKREKAH--GEVE-K 154
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ +R ++ + +P I D AL R GR DR+I+
Sbjct: 155 RIVSQLLTLMDGLKTRAHVVVIAATNRPNSI---DGALRRFGRFDREID 200
>gi|3874892|emb|CAA88105| (Z48045) similar to P97 protein; cDNA EST EMBL:M89239 comes from
this gene; cDNA EST EMBL:D28083 comes from this gene;
cDNA EST EMBL:D28082 comes from this gene; cDNA EST
EMBL:T00671 comes from this gene; cDNA EST EMBL:D32722
c... >gi|3875715|emb|CAA88314| (Z48334) similar to P97
protein; cDNA EST EMBL:M89239 comes from this gene; cDNA
EST EMBL:D28083 comes from this gene; cDNA EST
EMBL:D28082 comes from this gene; cDNA EST EMBL:T00671
comes from this gene; cDNA EST EMBL:D32722 c...
Length = 810
Score = 67.1 bits (161), Expect = 4e-11
Identities = 35/107 (32%), Positives = 60/107 (55%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VRDVF A+ P ++F DE+D+I R S
Sbjct: 544 FISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAAD 603
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 604 RVINQVLTEMDGMNAK--KNVFIIGATNRPDIIDPAVLRPGRLDQLI 648
Score = 54.7 bits (129), Expect = 2e-07
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F ++ P+I+FIDEIDAI KR + G+ E +
Sbjct: 271 FFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKREKAH--GEVE-K 327
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ +R ++ + +P I D AL R GR DR+I+
Sbjct: 328 RIVSQLLTLMDGLKTRAHVVVIAATNRPNSI---DGALRRFGRFDREID 373
>gi|3337433 (AF047037) transitional endoplasmic reticulum ATPase TER94
[Drosophila melanogaster]
Length = 801
Score = 66.3 bits (159), Expect = 6e-11
Identities = 33/107 (30%), Positives = 60/107 (55%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VRD+F A+ P ++F DE+D+I R +
Sbjct: 536 FISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAAD 595
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 596 RVINQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 640
Score = 62.5 bits (149), Expect = 1e-09
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDEIDAI KR D+T +
Sbjct: 263 FFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKR---DKTHGEVER 319
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ S ++ + +P I DPAL R GR DR+I+
Sbjct: 320 RIVSQLLTLMDGMKKSSHLIVMAATNRPNSI---DPALRRFGRFDREID 365
>gi|1172019|sp|P46463|PEX1_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS1 (PEROXIN-1)
>gi|1076972|pir||A55152 PAS1 protein - yeast (Pichia
pastoris) >gi|537420|emb|CAA85450| (Z36987) PAS1 [Pichia
pastoris]
Length = 1157
Score = 66.3 bits (159), Expect = 6e-11
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ YIG + VR++F+ A+ KP I+F DE D+I KR D TG
Sbjct: 861 FISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRG-HDSTG--VTD 917
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L Q+DG + + + + + D++D ALLR GR+D+ +
Sbjct: 918 RVVNQMLTQMDG--AEGLDGVYVLAATSRPDLIDSALLRPGRLDKSV 962
>gi|1705679|sp|P25694|CC48_YEAST CELL DIVISION CONTROL PROTEIN 48 >gi|2118116|pir||S67669 cell
division control protein CDC48 - yeast (Saccharomyces
cerevisiae) >gi|1431189|emb|CAA98694| (Z74174) ORF
YDL126c [Saccharomyces cerevisiae]
>gi|1449400|emb|CAA40276| (X56956) CDC48p [Saccharomyces
cerevisiae]
Length = 835
Score = 66.0 bits (158), Expect = 9e-11
Identities = 34/107 (31%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ +RD+F A+ P+++F+DE+D+I R S
Sbjct: 549 FISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASD 608
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DG+ + + + + +P D +DPA+LR GR+D+ I
Sbjct: 609 RVVNQLLTEMDGMNAKKNVFVIGATNRP---DQIDPAILRPGRLDQLI 653
Score = 63.2 bits (151), Expect = 6e-10
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ P+IIFIDEID+I KR D+T +
Sbjct: 276 FFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKR---DKTNGEVER 332
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ +R ++ + +P I DPAL R GR DR+++
Sbjct: 333 RVVSQLLTLMDGMKARSNVVVIAATNRPNSI---DPALRRFGRFDREVD 378
>gi|2291210 (AF016424) contains similarity to the AAA family of ATPases
[Caenorhabditis elegans] >gi|3721554|dbj|BAA33544|
(AB010968) PEX6 [Caenorhabditis elegans]
Length = 720
Score = 66.0 bits (158), Expect = 9e-11
Identities = 35/108 (32%), Positives = 61/108 (56%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + GP+L+ Y+G +R VF+ AK+ P +IF DEID++ R + +G +
Sbjct: 521 FLSVKGPELLNKYVGQSEENLRKVFERAKQASPCVIFFDEIDSLAPNRGRNGDSGG-VID 579
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +LD + + + K+ + D+LD +L+ GR D+ +E
Sbjct: 580 RIVSQLLAELDKLHNSPLTKVFVMGATNRPDLLDNSLMTPGRFDKLVE 627
>gi|2330848|emb|CAB11085| (Z98533) transitional endoplasmic reticulum atpase
[Schizosaccharomyces pombe]
Length = 432
Score = 65.6 bits (157), Expect = 1e-10
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDH-EV 151
F+ + GP+L+ M+ G+ VRD+F A+ P ++F+DE+D+I R S GD
Sbjct: 176 FISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGAS--AGDSGGG 233
Query: 150 QRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL ++DGV S + + + +P D +DPAL+R GR+D+ I
Sbjct: 234 DRVVNQLLTEMDGVNSKKNVFVIGATNRP---DQIDPALMRPGRLDQLI 279
>gi|4154795 (AE001464) ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori
J99]
Length = 550
Score = 65.2 bits (156), Expect = 1e-10
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +G Q+Y+G GA+ V ++F AK+ PSIIFIDEIDA+G R R+ + E
Sbjct: 223 FFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARG-GHRSDEREA- 280
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
T+ +LL ++DG ++ + ++++D ALLRS R DR+I
Sbjct: 281 -TLNQLLTEMDGFLQN--DEVVVIGATNQMEVMDEALLRSKRFDRRI 324
>gi|1730618|sp|P54813|YMEH_CAEEL YME1 PROTEIN HOMOLOG >gi|3878638|emb|CAA88955| (Z49128) similar to
ATP-binding protein (AAA protein family member); cDNA
EST EMBL:D76102 comes from this gene; cDNA EST
EMBL:D27169 comes from this gene; cDNA EST EMBL:D27168
comes from this gene; cDNA EST EMBL:D27171 comes fr...
Length = 676
Score = 65.2 bits (156), Expect = 1e-10
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F AG + ++ +G GAR VRD+F AK P IIFIDEID++G+KR + +
Sbjct: 262 FFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEIDSVGSKRVSN--SIHPYAN 319
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL+++DG II+ R +D LD ALLR GR D ++
Sbjct: 320 QTINQLLSEMDGFTRNEGIIVIAATNR----VDDLDKALLRPGRFDVRV 364
>gi|2313382|gb|AAD07354| (AE000547) cell division protein (ftsH) [Helicobacter pylori 26695]
Length = 550
Score = 64.8 bits (155), Expect = 2e-10
Identities = 41/107 (38%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +G Q+Y+G GA+ V ++F AK PSIIFIDEIDA+G R R+ + E
Sbjct: 223 FFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARG-GHRSDEREA- 280
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
T+ +LL ++DG ++ + ++++D ALLRS R DR+I
Sbjct: 281 -TLNQLLTEMDGFLQN--DEVVVIGATNQMEVMDEALLRSKRFDRRI 324
>gi|530428|emb|CAA83750| (Z33086) cell Division Protein FTSH (family) [Mycoplasma
capricolum]
Length = 81
Score = 64.8 bits (155), Expect = 2e-10
Identities = 33/68 (48%), Positives = 49/68 (71%)
Query: 315 AGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTML 136
AG + +M++G GA VR++F AK+ P+IIFIDEIDA+G KR+ + TG +E +T+
Sbjct: 1 AGSEFEEMFVGVGASRVREMFNEAKKSAPAIIFIDEIDAVGRKRNSAIGTGTNE--QTLN 58
Query: 135 ELLNQLDG 112
+LL +LDG
Sbjct: 59 QLLVELDG 66
>gi|418575|sp|P32795|YME1_YEAST YME1 PROTEIN (TAT-BINDING HOMOLOG 11) (OSD1 PROTEIN)
>gi|2133216|pir||S46608 YTA11 protein - yeast
(Saccharomyces cerevisiae) >gi|295582 (L14616) putative
ATPase [Saccharomyces cerevisiae]
>gi|809589|emb|CAA89278| (Z49274) Yme1p [Saccharomyces
cerevisiae] >gi|1314098|emb|CAA95020| (Z71255) Yme1p
[Saccharomyces cerevisiae]
Length = 747
Score = 64.8 bits (155), Expect = 2e-10
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + ++Y+G GA+ +RD+F A+ P+IIFIDE+DAIG KR+ D+ +
Sbjct: 342 FFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQA---YAK 398
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL +LDG + + + LD AL R GR D+ +
Sbjct: 399 QTLNQLLVELDGF--SQTSGIIIIGATNFPEALDKALTRPGRFDKVV 443
>gi|531752|emb|CAA56954| (X81067) probable mitochondrial protein; nearly identical to YME1
[Saccharomyces cerevisiae]
Length = 747
Score = 64.8 bits (155), Expect = 2e-10
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + ++Y+G GA+ +RD+F A+ P+IIFIDE+DAIG KR+ D+ +
Sbjct: 342 FFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQA---YAK 398
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL +LDG + + + LD AL R GR D+ +
Sbjct: 399 QTLNQLLVELDGF--SQTSGIIIIGATNFPEALDKALTRPGRFDKVV 443
>gi|684978|dbj|BAA03839| (D16332) OSD1 gene product [Saccharomyces cerevisiae]
Length = 747
Score = 64.8 bits (155), Expect = 2e-10
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + ++Y+G GA+ +RD+F A+ P+IIFIDE+DAIG KR+ D+ +
Sbjct: 342 FFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQA---YAK 398
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL +LDG + + + LD AL R GR D+ +
Sbjct: 399 QTLNQLLVELDGF--SQTSGIIIIGATNFPEALDKALTRPGRFDKVV 443
>gi|172098 (M58676) ATPase Pas1p [Saccharomyces cerevisiae]
Length = 1043
Score = 64.4 bits (154), Expect = 3e-10
Identities = 36/107 (33%), Positives = 63/107 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ +IG + +R++F+ A+ KP I+F DE D+I KR D TG
Sbjct: 759 FISVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRG-HDSTG--VTD 815
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL Q+DG + + + + + D++D ALLR GR+D+ +
Sbjct: 816 RVVNQLLTQMDG--AEGLDGVYILAATSRPDLIDSALLRPGRLDKSV 860
>gi|548458|sp|P24004|PEX1_YEAST PEROXISOME BIOSYNTHESIS PROTEIN PAS1 (PEROXIN-1)
>gi|539305|pir||S38034 PAS1 protein - yeast
(Saccharomyces cerevisiae) >gi|486351|emb|CAA82041|
(Z28197) ORF YKL197c [Saccharomyces cerevisiae]
Length = 1043
Score = 64.4 bits (154), Expect = 3e-10
Identities = 36/107 (33%), Positives = 63/107 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+++ +IG + +R++F+ A+ KP I+F DE D+I KR D TG
Sbjct: 759 FISVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRG-HDSTG--VTD 815
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + +LL Q+DG + + + + + D++D ALLR GR+D+ +
Sbjct: 816 RVVNQLLTQMDG--AEGLDGVYILAATSRPDLIDSALLRPGRLDKSV 860
>gi|4406773|gb|AAD20084| (AC006836) putative cell division control protein 48 [Arabidopsis
thaliana]
Length = 603
Score = 64.4 bits (154), Expect = 3e-10
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEV- 151
F L+ +L MY+G+G L+R+ F+ A+ PSIIF DE D + KR D + V
Sbjct: 348 FFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVG 407
Query: 150 QRTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRID 16
+R + LL ++DG+ ++ I+ L +P I D AL+R GR D
Sbjct: 408 ERLLSTLLTEMDGLEEAKGILVLAATNRPYAI---DAALMRPGRFD 450
Score = 46.1 bits (107), Expect = 8e-05
Identities = 32/96 (33%), Positives = 53/96 (54%), Gaps = 6/96 (6%)
Query: 291 YIGDGARLVRDVFKLAKEX----KPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELL- 127
+ G+ +++R+ F A KPS+IFIDEID + +R D+ R D + + L+
Sbjct: 96 HAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRR-DARREQDVRIASQLFTLMD 154
Query: 126 -NQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
N+ R+++ R +D +DPAL R+GR D +E
Sbjct: 155 SNKPSSSAPRVVVVASTNR----VDAIDPALRRAGRFDALVE 192
>gi|1079323|pir||S52928 XSUG1 protein - African clawed frog
Length = 283
Score = 64.4 bits (154), Expect = 3e-10
Identities = 28/53 (52%), Positives = 44/53 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR 169
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG++ S R
Sbjct: 206 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRGSRGAR 258
>gi|1729896|sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 1 (P97/CDC48
HOMOLOG 1) >gi|3874005|emb|CAA90050| (Z49886) similar to
transitional endoplasmic reticulum ATPase homolog 1 (P97
protein); cDNA EST EMBL:D67689 comes from this gene;
cDNA EST EMBL:D37049 comes from this gene; cDNA EST
EMBL:D37645 comes from this gene; cDNA EST EM...
Length = 809
Score = 63.6 bits (152), Expect = 4e-10
Identities = 35/107 (32%), Positives = 61/107 (56%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKR-SDSDRTGDHEV 151
F+ + GP+L+ M+ G+ VRDVF A+ P ++F DE+D+I R + G
Sbjct: 545 FISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGAS 604
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + ++L ++DG+ ++ + + DI+DPA+LR GR+D+ I
Sbjct: 605 DRVINQVLTEMDGMNAK--KNVFIIGATNRPDIIDPAVLRPGRLDQLI 650
Score = 57.8 bits (137), Expect = 2e-08
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ ++ +P+I+FIDEIDAI KR ++T +
Sbjct: 272 FFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKR---EKTNGEVER 328
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DGV R ++ + +P I D AL R GR DR+I+
Sbjct: 329 RIVSQLLTLMDGVKGRSNLVVIAATNRPNSI---DGALRRFGRFDREID 374
>gi|1778842 (U83085) cell division cycle protein 48 [Dictyostelium discoideum]
Length = 793
Score = 63.2 bits (151), Expect = 6e-10
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + GP+++ G+ +R F+ A++ PSIIFIDEID+I KR ++T +
Sbjct: 264 FFLINGPKIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR---EKTQGEVER 320
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ SR ++ + +P I DPAL R GR DR+I+
Sbjct: 321 RIVSQLLTLMDGLKSRAHVIVMGATNRPNSI---DPALRRFGRFDREID 366
Score = 53.9 bits (127), Expect = 4e-07
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GP+L+ M+ G+ VR++F A++ P ++F DE+D+I R S
Sbjct: 537 FISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDAGGAGD 596
Query: 147 RTMLELLNQLDGV 109
R + ++L ++DG+
Sbjct: 597 RVINQILTEMDGM 609
>gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
Methanococcus jannaschii
Length = 373
Score = 62.8 bits (150), Expect = 7e-10
Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + P+L+ ++GD ++++R++++ A E P I+FIDE+DAIG R GD V
Sbjct: 184 FILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGD--VS 241
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
+ LL +LDG+ + ++ + P +LDPA+ R + +IEF
Sbjct: 242 EVVNALLTELDGIKENEGVVTIAATNNPA---MLDPAI--RSRFEEEIEF 286
>gi|3915816|sp|Q58889|PRS2_METJA PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MJ1494 >gi|2826420
(U67590) AAA superfamily ATPase, similar to FtsH
[Methanococcus jannaschii]
Length = 371
Score = 62.8 bits (150), Expect = 7e-10
Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + P+L+ ++GD ++++R++++ A E P I+FIDE+DAIG R GD V
Sbjct: 182 FILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGD--VS 239
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
+ LL +LDG+ + ++ + P +LDPA+ R + +IEF
Sbjct: 240 EVVNALLTELDGIKENEGVVTIAATNNPA---MLDPAI--RSRFEEEIEF 284
>gi|4008355|emb|CAA92596| (Z68297) Similarity to Yeast TAT-binding homolog 7 (SW:TBP7_YEAST);
cDNA EST EMBL:D37124 comes from this gene; cDNA EST
EMBL:D35150 comes from this gene; cDNA EST EMBL:D35400
comes from this gene; cDNA EST EMBL:D34900 comes fro...
>gi|4008373|emb|CAA92684| (Z68316) Similarity to Yeast
TAT-binding homolog 7 (SW:TBP7_YEAST); cDNA EST
EMBL:D37124 comes from this gene; cDNA EST EMBL:D35150
comes from this gene; cDNA EST EMBL:D35400 comes from
this gene; cDNA EST EMBL:D34900 comes fro...
Length = 1242
Score = 60.9 bits (145), Expect = 3e-09
Identities = 36/109 (33%), Positives = 54/109 (49%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F G + ++G+ R +R +F A +PSIIF DEID + RS +
Sbjct: 458 FFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIV 517
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
T+L L++ LDG +++ +D LDPAL R GR DR++ F
Sbjct: 518 STLLALMDGLDGRGEVVVI-----GATNRLDTLDPALRRPGRFDRELRF 561
>gi|1729861|sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7
Length = 936
Score = 60.9 bits (145), Expect = 3e-09
Identities = 36/109 (33%), Positives = 54/109 (49%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F G + ++G+ R +R +F A +PSIIF DEID + RS +
Sbjct: 152 FFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIV 211
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
T+L L++ LDG +++ +D LDPAL R GR DR++ F
Sbjct: 212 STLLALMDGLDGRGEVVVI-----GATNRLDTLDPALRRPGRFDRELRF 255
>gi|3874249|emb|CAA94119| (Z70205) Similarity to Yeast peroxisome biosynthesis protein PAS1
(SW:PAS1_YEAST) [Caenorhabditis elegans]
Length = 270
Score = 60.1 bits (143), Expect = 5e-09
Identities = 38/106 (35%), Positives = 56/106 (51%), Gaps = 1/106 (0%)
Query: 324 LKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRS-DSDRTGDHEVQ 148
+ + GP+L+ YIG VR VF+ A+ P I+F DE+D++ KR DS D V
Sbjct: 65 VNVKGPELLSKYIGASEENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVN 124
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+ + EL G+ II+ + ID++D ALLR GR D +
Sbjct: 125 QLLTELDGAEGGMKGVIILGC-----TSRIDLIDDALLRPGRFDHHV 166
>gi|1272680|emb|CAA56963| (X81072) YTA7 [Saccharomyces cerevisiae]
Length = 1379
Score = 59.3 bits (141), Expect = 8e-09
Identities = 36/109 (33%), Positives = 57/109 (52%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F G ++ ++G+ R +R +F+ AK+ +PSIIF DEID + RS +
Sbjct: 480 FFMRKGADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIV 539
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
T+L L++ +D I++ +P D +DPAL R GR DR+ F
Sbjct: 540 STLLALMDGMDNRGQVIVIGAT--NRP---DAVDPALRRPGRFDREFYF 583
>gi|1729862|sp|P40340|TBP7_YEAST TAT-BINDING HOMOLOG 7 >gi|2133219|pir||S64603 YTA7 protein - yeast
(Saccharomyces cerevisiae) >gi|1323491|emb|CAA97300|
(Z73055) ORF YGR270w [Saccharomyces cerevisiae]
>gi|1556439|emb|CAA69201| (Y07893) yta7 [Saccharomyces
cerevisiae]
Length = 1379
Score = 59.3 bits (141), Expect = 8e-09
Identities = 36/109 (33%), Positives = 57/109 (52%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F G ++ ++G+ R +R +F+ AK+ +PSIIF DEID + RS +
Sbjct: 480 FFMRKGADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIV 539
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
T+L L++ +D I++ +P D +DPAL R GR DR+ F
Sbjct: 540 STLLALMDGMDNRGQVIVIGAT--NRP---DAVDPALRRPGRFDREFYF 583
>gi|1173445|sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 DOUBLE MUTANTS
>gi|2130392|pir||S62461 hypothetical protein SPAC2G11.06
- fission yeast (Schizosaccharomyces pombe) >gi|496311
(L33456) supressor protein [Schizosaccharomyces pombe]
>gi|1019404|emb|CAA91171| (Z54354) putative AAA-family
ATPase [Schizosaccharomyces pombe]
Length = 432
Score = 58.9 bits (140), Expect = 1e-08
Identities = 30/73 (41%), Positives = 46/73 (62%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ LV ++G+ RLVR +F++A+E KPSIIFIDEID++ RS+ + +
Sbjct: 190 FFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGE---SESSR 246
Query: 147 RTMLELLNQLDGV 109
R E L Q++GV
Sbjct: 247 RIKTEFLVQMNGV 259
>gi|3560170|emb|CAA20682| (AL031525) 26s protease regulatory subunit S10b
[Schizosaccharomyces pombe]
Length = 249
Score = 58.9 bits (140), Expect = 1e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGD 160
FLK+ +V YIG+ AR++R++F AKE +P +IF+DEIDAIG +R + D
Sbjct: 194 FLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSAD 249
>gi|3790601 (AF088800) ARC [Rhodococcus erythropolis]
Length = 591
Score = 58.6 bits (139), Expect = 1e-08
Identities = 37/108 (34%), Positives = 67/108 (61%), Gaps = 5/108 (4%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAK----EXKPSIIFIDEIDAIGTKRSDSDRTGD 160
FL + GP+L+ ++G+ R +R +F+ A+ E P I+F DE+D+I R +
Sbjct: 311 FLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTRGSGVSS-- 368
Query: 159 HEVQRTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+V+ T++ +LL+++DGV + + + D++DPA+LR GR+D KI+
Sbjct: 369 -DVETTVVPQLLSEIDGV--EGLENVIVIGASNREDMIDPAILRPGRLDVKIK 418
>gi|1173444|sp|P46467|SKD1_MOUSE SKD1 PROTEIN >gi|1083520|pir||S48696 suppressor protein SKD1 -
mouse >gi|557876 (U10119) SKD1 [Mus musculus]
Length = 444
Score = 58.6 bits (139), Expect = 1e-08
Identities = 29/73 (39%), Positives = 47/73 (63%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ LV ++G+ +LV+++F+LA+E KPSIIFIDEID++ RS+++ +
Sbjct: 196 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAAR 252
Query: 147 RTMLELLNQLDGV 109
R E L Q+ GV
Sbjct: 253 RIKTEFLVQMQGV 265
>gi|3329390 (AF038960) SKD1 homolog [Homo sapiens]
Length = 444
Score = 58.6 bits (139), Expect = 1e-08
Identities = 29/73 (39%), Positives = 47/73 (63%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ LV ++G+ +LV+++F+LA+E KPSIIFIDEID++ RS+++ +
Sbjct: 196 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAAR 252
Query: 147 RTMLELLNQLDGV 109
R E L Q+ GV
Sbjct: 253 RIKTEFLVQMQGV 265
>gi|1168248|sp|P46509|A26A_MYCLE PUTATIVE ATPASE A2126A >gi|2145850|pir||S72845 H+-transporting ATP
synthase (EC 3.6.1.34) - Mycobacterium leprae >gi|467000
(U00017) a2126a; B2126_C1_167 [Mycobacterium leprae]
>gi|4200269|emb|CAA22926| (AL035310) putative ATPase
MLCB2533.12 [Mycobacterium leprae]
Length = 609
Score = 58.2 bits (138), Expect = 2e-08
Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 6/108 (5%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAK----EXKPSIIFIDEIDAIGTKRSDSDRTG- 163
FL + GP+L+ ++G+ R +R +F+ A+ E P I+F DE+D+I R TG
Sbjct: 329 FLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRG----TGV 384
Query: 162 DHEVQRTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+V+ T++ +LL+++DGV + + + D++DPA+LR GR+D KI+
Sbjct: 385 SSDVETTVVPQLLSEIDGV--EGLENVIVIGASNREDMIDPAILRPGRLDVKIK 436
>gi|2253055|emb|CAB10706| (Z97559) hypothetical protein Rv2115c [Mycobacterium tuberculosis]
Length = 609
Score = 58.2 bits (138), Expect = 2e-08
Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 6/108 (5%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAK----EXKPSIIFIDEIDAIGTKRSDSDRTG- 163
FL + GP+L+ ++G+ R +R +F+ A+ E P I+F DE+D+I R TG
Sbjct: 329 FLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRG----TGV 384
Query: 162 DHEVQRTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+V+ T++ +LL+++DGV + + + D++DPA+LR GR+D KI+
Sbjct: 385 SSDVETTVVPQLLSEIDGV--EGLENVIVIGASNREDMIDPAILRPGRLDVKIK 436
>gi|3676746 (AF086832) ARC [Streptomyces coelicolor]
Length = 581
Score = 58.2 bits (138), Expect = 2e-08
Identities = 37/108 (34%), Positives = 66/108 (60%), Gaps = 5/108 (4%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAK----EXKPSIIFIDEIDAIGTKRSDSDRTGD 160
FL + GP+L+ Y+G+ R +R VF+ A+ E P I+F DE++++ R +
Sbjct: 300 FLNIKGPELLNKYVGETERQIRLVFQRAREKASEGTPVIVFFDEMESLFRTRGSGVSS-- 357
Query: 159 HEVQRTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+V+ T++ +LL ++DGV + + + D++DPA+LR GR+D KI+
Sbjct: 358 -DVENTIVPQLLAEIDGV--EGLQNVVVIGASNREDMIDPAILRPGRLDVKIK 407
>gi|1176560|sp|P46508|YME1_SCHMA YME1 PROTEIN HOMOLOG >gi|542453|pir||S42826 probable ATPase - fluke
(Schistosoma mansoni) >gi|453978|emb|CAA82844| (Z29947)
ATPase (putative) [Schistosoma mansoni]
Length = 662
Score = 57.8 bits (137), Expect = 2e-08
Identities = 39/107 (36%), Positives = 61/107 (56%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL +G ++ +G GA +R +F AK+ P ++FIDEID++G R+ S
Sbjct: 227 FLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSPH--HPFAN 284
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG S+ I+ L Q ++LD ALLR GR D +I
Sbjct: 285 QTINQLLAEMDGFQSKEGIIVLGATNQ---AEVLDKALLRPGRFDVQI 329
>gi|2291232 (AF016427) similar to the AAA family of ATPases [Caenorhabditis
elegans]
Length = 594
Score = 57.0 bits (135), Expect = 4e-08
Identities = 29/73 (39%), Positives = 45/73 (60%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ L ++G+G +LVR +F +A+ PS+IFIDEID++ + RS+S+ +
Sbjct: 377 FFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESS---R 433
Query: 147 RTMLELLNQLDGV 109
R E L QLDGV
Sbjct: 434 RIKTEFLVQLDGV 446
>gi|2388970|emb|CAB11703| (Z98979) tat binding homolog [Schizosaccharomyces pombe]
Length = 1190
Score = 56.6 bits (134), Expect = 6e-08
Identities = 38/109 (34%), Positives = 57/109 (51%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F G + ++G+ R +R +F+ AK +PSIIF DEID + RS +
Sbjct: 333 FYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIV 392
Query: 147 RTMLELLNQLDGV*SR-IIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
T+L L +DG+ SR ++ + +P D +DPAL R GR DR+ F
Sbjct: 393 STLLAL---MDGMESRGQVIIIGATNRP---DAVDPALRRPGRFDREFYF 436
>gi|3600100 (AF090430) ATP-dependent metalloprotease FtsH1 [Mus musculus]
Length = 715
Score = 56.6 bits (134), Expect = 6e-08
Identities = 36/107 (33%), Positives = 61/107 (56%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +G + +M++G GA +R++F+ AK P +IFIDE+D++G KR +S H
Sbjct: 342 FYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM---HPYS 398
Query: 147 R-TMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R T+ +LL ++DG + + + + LD AL+R GR D ++
Sbjct: 399 RQTINQLLAEMDGF--KPNEGVIIIGATNFPEALDNALIRPGRFDMQV 444
>gi|1176230|sp|P42811|PRS2_METTM PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH1011
>gi|1076133|pir||S51137 hypothetical protein 1 -
Methanobacterium thermoautotrophicum
>gi|809719|emb|CAA58665| (X83691) gtg start point
[Methanobacterium thermoautotrophicum]
Length = 372
Score = 56.6 bits (134), Expect = 6e-08
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
L+ ++GDGAR + ++++LA + PS+IFIDE+DAIG R GD V + LL
Sbjct: 193 LIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRGD--VSEVVNALLT 250
Query: 123 QLDGV 109
++DG+
Sbjct: 251 EMDGI 255
>gi|3334301|sp|O27092|PRS2_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH1011
>gi|2622113 (AE000874) ATP-dependent 26S protease
regulatory subunit 8 [Methanobacterium
thermoautotrophicum]
Length = 372
Score = 56.6 bits (134), Expect = 6e-08
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
L+ ++GDGAR + ++++LA + PS+IFIDE+DAIG R GD V + LL
Sbjct: 193 LIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRGD--VSEVVNALLT 250
Query: 123 QLDGV 109
++DG+
Sbjct: 251 EMDGI 255
>gi|4454688|gb|AAD20962| (AF070656) FtsH homolog [Homo sapiens]
Length = 517
Score = 56.6 bits (134), Expect = 6e-08
Identities = 36/107 (33%), Positives = 61/107 (56%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +G + +M++G GA +R++F+ AK P +IFIDE+D++G KR +S H
Sbjct: 146 FYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM---HPYS 202
Query: 147 R-TMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R T+ +LL ++DG + + + + LD AL+R GR D ++
Sbjct: 203 RQTINQLLAEMDGF--KPNEGVIIIGATNFPEALDNALIRPGRFDMQV 248
>gi|2133218|pir||S61113 YTA6 protein - yeast (Saccharomyces cerevisiae) >gi|1147619
(U41849) Yta6p [Saccharomyces cerevisiae]
Length = 754
Score = 56.2 bits (133), Expect = 7e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ L+ Y+G+ +LVR +F +AK+ PSIIFIDEID++ T RSD++ ++
Sbjct: 532 FFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIK 591
Query: 147 RTML 136
+L
Sbjct: 592 TELL 595
>gi|3128218 (AC004077) putative end13 protein [Arabidopsis thaliana]
Length = 393
Score = 56.2 bits (133), Expect = 7e-08
Identities = 37/107 (34%), Positives = 60/107 (55%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ +V + GD +L+R +F LA+ PS IF+DEIDAI ++R R+ +
Sbjct: 173 FFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASR 232
Query: 147 RTMLELLNQLDGV--*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R ELL Q+DG+ + ++ L P LD A+LR R++++I
Sbjct: 233 RLKTELLIQMDGLQKTNELVFVLAATNLPWE---LDAAMLR--RLEKRI 276
>gi|730905|sp|P40328|TBP6_YEAST PROBABLE 26S PROTEASE SUBUNIT YTA6 (TAT-BINDING HOMOLOG 6)
>gi|531761|emb|CAA56959| (X81071) probable regulatory
subunit of 26S protease [Saccharomyces cerevisiae]
Length = 446
Score = 56.2 bits (133), Expect = 7e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ L+ Y+G+ +LVR +F +AK+ PSIIFIDEID++ T RSD++ ++
Sbjct: 236 FFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIK 295
Query: 147 RTML 136
+L
Sbjct: 296 TELL 299
>gi|1706647|sp|P52917|EN13_YEAST END13 PROTEIN >gi|2131247|pir||S59831 END13 protein - yeast
(Saccharomyces cerevisiae) >gi|786322 (U25842) Similar
to several members of the Cdc48/Pas1/Sec18 family of
proteins (Swiss Prot. accession numbers P25694, P24004,
P18759) [Saccharomyces cerevisiae]
Length = 437
Score = 56.2 bits (133), Expect = 7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ LV ++G+ +LV+ +F +A+E KPSIIFIDE+DA+ R + + +
Sbjct: 194 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEAS---R 250
Query: 147 RTMLELLNQLDGV 109
R ELL Q++GV
Sbjct: 251 RIKTELLVQMNGV 263
>gi|1054845|emb|CAA63364| (X92680) allelic to VPS4 [Saccharomyces cerevisiae]
Length = 437
Score = 56.2 bits (133), Expect = 7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ LV ++G+ +LV+ +F +A+E KPSIIFIDE+DA+ R + + +
Sbjct: 194 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEAS---R 250
Query: 147 RTMLELLNQLDGV 109
R ELL Q++GV
Sbjct: 251 RIKTELLVQMNGV 263
>gi|2257509|dbj|BAA21405| (AB004535) TAT-BINDING HOMOLOG 7. [Schizosaccharomyces pombe]
Length = 1241
Score = 55.4 bits (131), Expect = 1e-07
Identities = 35/109 (32%), Positives = 54/109 (49%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F G + ++G+ R +R +F+ A+ +PSIIF DEID + RS +
Sbjct: 479 FFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIV 538
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
T+L L++ LD +++ +P LDPAL R GR DR+ F
Sbjct: 539 STLLALMDGLDTRGQVVVIGAT--NRPND---LDPALRRPGRFDREFYF 582
>gi|2649294 (AE001015) cell division control protein, AAA family, putative
[Archaeoglobus fulgidus]
Length = 352
Score = 54.7 bits (129), Expect = 2e-07
Identities = 37/109 (33%), Positives = 60/109 (54%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL + +L+ ++GDGAR V ++++ A++ P I+F+DE DAI R + GD V
Sbjct: 163 FLSVKSTKLIGEHVGDGARRVHELYERARQLAPCIVFLDEFDAIALDRGYQEIRGD--VS 220
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
+ LL +LDG S + +++LD A +RS R + +IEF
Sbjct: 221 EIVNALLTELDGTNSN--EGICTIAATNRVELLD-ASIRS-RFEEEIEF 265
>gi|462591|sp|P34808|MEI1_CAEEL MEIOTIC SPINDLE FORMATION PROTEIN MEI-1 >gi|409131 (L25423) mei-1
[Caenorhabditis elegans] >gi|3879272|emb|CAB00052|
(Z75713) similar to MEI-1 meiotic spindle formation
protein; cDNA EST EMBL:M88967 comes from this gene; cDNA
EST yk257a12.3 comes from this gene; cDNA EST yk257a12.5
comes from this gene; cDNA EST yk299d3.3 comes from this
gene...
Length = 472
Score = 54.7 bits (129), Expect = 2e-07
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEV- 151
F ++ L + GD ++VR +F+LA+ PSIIFIDEID +G +R +S G+HE
Sbjct: 254 FFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNS---GEHEAS 310
Query: 150 QRTMLELLNQLDG 112
+R E L Q+DG
Sbjct: 311 RRVKSEFLVQMDG 323
>gi|1078885|pir||S47861 mei-1 protein - Caenorhabditis elegans
Length = 475
Score = 54.7 bits (129), Expect = 2e-07
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEV- 151
F ++ L + GD ++VR +F+LA+ PSIIFIDEID +G +R +S G+HE
Sbjct: 254 FFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNS---GEHEAS 310
Query: 150 QRTMLELLNQLDG 112
+R E L Q+DG
Sbjct: 311 RRVKSEFLVQMDG 323
>gi|3647351|emb|CAB10575| (Z97348) predicted using hexExon; MAL3P1.10 (PFC0140c),
N-ethylmaleimide-sensitive fusion protein, len: 783 aa;
Similarity to a number of eukaryotic N-ethylmaleimide
sensitive fusion proteins (NSFs). Human NSF
(SW:NSF_MOUSE)....
Length = 783
Score = 54.3 bits (128), Expect = 3e-07
Identities = 38/103 (36%), Positives = 60/103 (57%), Gaps = 8/103 (7%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAK-EXKPS-------IIFIDEIDAIGTKRSDSDRTGDH 157
GP+++ Y+G +R++FK A+ E K S II +DEIDAI +R + +
Sbjct: 321 GPEILNKYVGQSEENIRNLFKDAEMEYKQSGENSLLHIIILDEIDAICRQRGNVGSSSTG 380
Query: 156 EVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+ +LL+++DGV S + + L ID++D ALLR GR + IE
Sbjct: 381 VNDSVVNQLLSKIDGVNS--LNNILLIGMTNRIDLIDEALLRPGRFELHIE 429
>gi|3283072 (AF056022) p60 katanin [Homo sapiens]
Length = 491
Score = 53.5 bits (126), Expect = 5e-07
Identities = 30/73 (41%), Positives = 46/73 (62%), Gaps = 1/73 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEV- 151
F ++ L Y G+ +LVR +F++A+ P+ IFIDEID+I ++R S+ +HE
Sbjct: 270 FFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSE---EHEAS 326
Query: 150 QRTMLELLNQLDGV 109
+R ELL Q+DGV
Sbjct: 327 RRVKAELLVQMDGV 340
>gi|3098603 (AF052191) katanin p60 subunit [Strongylocentrotus purpuratus]
Length = 516
Score = 53.1 bits (125), Expect = 6e-07
Identities = 31/73 (42%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEV- 151
F ++ L Y G+ +LVR +F++A+ PS IFIDEID+I +KR +HE
Sbjct: 295 FFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKRGTG---SEHEAS 351
Query: 150 QRTMLELLNQLDGV 109
+R ELL Q+DGV
Sbjct: 352 RRVKSELLIQMDGV 365
>gi|3860272 (AC005824) putative suppressor protein [Arabidopsis thaliana]
>gi|4314399|gb|AAD15609| (AC006232) putative skd1
protein [Arabidopsis thaliana]
Length = 435
Score = 52.3 bits (123), Expect = 1e-06
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ LV ++G+ +LV ++F++A+E PSIIF+DEID++ R + + + +
Sbjct: 193 FFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNES--EASR 250
Query: 147 RTMLELLNQLDGV 109
R ELL Q+ GV
Sbjct: 251 RIKTELLVQMQGV 263
>gi|3257698|dbj|BAA30381| (AP000005) 363aa long hypothetical protein [Pyrococcus horikoshii]
Length = 363
Score = 51.9 bits (122), Expect = 1e-06
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F + L+ Y G+ ++LV +F LA++ PS+IFIDE+D++ KRS D +
Sbjct: 149 FFSVKASDLLSKYFGESSKLVSALFSLARQLSPSVIFIDEVDSLTMKRSSL----DDAAR 204
Query: 147 RTMLELLNQLDG 112
R + LL ++DG
Sbjct: 205 RMIGTLLAEIDG 216
>gi|1449179|dbj|BAA13101| (D86506) N-ethylmaleimide sensitive fusion protein [Nicotiana
tabacum]
Length = 739
Score = 51.9 bits (122), Expect = 1e-06
Identities = 37/103 (35%), Positives = 63/103 (60%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKR-SDSDRTGD 160
GP+++ ++G+ + VRD+F A++ + + +I DEIDAI R S D TG
Sbjct: 283 GPEVLSKFVGETEKNVRDLFADAEQDQRTKGDQSELHVIIFDEIDAICKSRGSTRDGTGV 342
Query: 159 HEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL ++DGV S + + L D+LD AL+R GR++ ++E
Sbjct: 343 HD--SIVNQLLTKIDGVES--LNNVLLIGMTNRKDLLDEALMRPGRLEVQVE 390
>gi|731461|sp|P39955|SAP1_YEAST SAP1 PROTEIN >gi|1077655|pir||S50550 hypothetical protein YER047c -
yeast (Saccharomyces cerevisiae) >gi|603280 (U18796)
Yer047cp [Saccharomyces cerevisiae]
Length = 897
Score = 51.2 bits (120), Expect = 2e-06
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAI-GTKRSDSDRTGDHEV 151
F ++ L Y+G+ +LVR +F +AK+ PSIIF+DEID+I G++ ++++ +
Sbjct: 666 FFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRI 725
Query: 150 QRTML 136
+ L
Sbjct: 726 KNEFL 730
>gi|2894288|emb|CAA17029| (AL021837) putative proteome subunit [Schizosaccharomyces pombe]
Length = 660
Score = 51.2 bits (120), Expect = 2e-06
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ L Y+GD +LVR +F++AK S+IF+DEID+I + R+DS +HE
Sbjct: 440 FFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSG--NEHESS 497
Query: 147 RTM 139
R +
Sbjct: 498 RRL 500
>gi|467977 (U03985) N-ethylmaleimide-sensitive factor [Homo sapiens]
Length = 751
Score = 50.4 bits (118), Expect = 4e-06
Identities = 38/103 (36%), Positives = 64/103 (61%), Gaps = 10/103 (9%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKR-SDSDRTGD 160
GP+++ Y+G+ +R +F A+E + II DEIDAI +R S + TG
Sbjct: 294 GPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV 353
Query: 159 HEVQRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL+++DGV I+ + + +P D++D ALLR GR++ K+E
Sbjct: 354 HDT--VVNQLLSKIDGVEQLNNILVIGMTNRP---DLIDEALLRPGRLEVKME 401
>gi|1171774|sp|P46460|NSF_MOUSE VESICULAR-FUSION PROTEIN NSF (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN) (NEM-SENSITIVE FUSION PROTEIN) (SKD2 PROTEIN)
>gi|557878 (U10120) SKD2 [Mus musculus]
Length = 744
Score = 50.4 bits (118), Expect = 4e-06
Identities = 38/103 (36%), Positives = 64/103 (61%), Gaps = 10/103 (9%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKR-SDSDRTGD 160
GP+++ Y+G+ +R +F A+E + II DEIDAI +R S + TG
Sbjct: 287 GPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV 346
Query: 159 HEVQRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL+++DGV I+ + + +P D++D ALLR GR++ K+E
Sbjct: 347 HDT--VVNQLLSKIDGVEQLNNILVIGMTNRP---DLIDEALLRPGRLEVKME 394
>gi|134267|sp|P18708|NSF_CRIGR VESICULAR-FUSION PROTEIN NSF (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN) (NEM-SENSITIVE FUSION PROTEIN)
Length = 744
Score = 50.4 bits (118), Expect = 4e-06
Identities = 38/103 (36%), Positives = 64/103 (61%), Gaps = 10/103 (9%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKR-SDSDRTGD 160
GP+++ Y+G+ +R +F A+E + II DEIDAI +R S + TG
Sbjct: 287 GPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV 346
Query: 159 HEVQRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL+++DGV I+ + + +P D++D ALLR GR++ K+E
Sbjct: 347 HDT--VVNQLLSKIDGVEQLNNILVIGMTNRP---DLIDEALLRPGRLEVKME 394
>gi|1171773|sp|P46459|NSF_HUMAN VESICULAR-FUSION PROTEIN NSF (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN) (NEM-SENSITIVE FUSION PROTEIN)
Length = 744
Score = 50.4 bits (118), Expect = 4e-06
Identities = 38/103 (36%), Positives = 64/103 (61%), Gaps = 10/103 (9%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKR-SDSDRTGD 160
GP+++ Y+G+ +R +F A+E + II DEIDAI +R S + TG
Sbjct: 287 GPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV 346
Query: 159 HEVQRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL+++DGV I+ + + +P D++D ALLR GR++ K+E
Sbjct: 347 HDT--VVNQLLSKIDGVEQLNNILVIGMTNRP---DLIDEALLRPGRLEVKME 394
>gi|90219|pir||S04235 vesicular fusion protein NSF - Chinese hamster (fragment)
>gi|49518|emb|CAA33678| (X15652) N-ethylmaleimide
sensitive fusion protein [Cricetulus longicaudatus]
>gi|226383|prf||1509333A NEM sensitive fusion protein
[Cricetulus griseus]
Length = 752
Score = 50.4 bits (118), Expect = 4e-06
Identities = 38/103 (36%), Positives = 64/103 (61%), Gaps = 10/103 (9%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKR-SDSDRTGD 160
GP+++ Y+G+ +R +F A+E + II DEIDAI +R S + TG
Sbjct: 295 GPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV 354
Query: 159 HEVQRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL+++DGV I+ + + +P D++D ALLR GR++ K+E
Sbjct: 355 HDT--VVNQLLSKIDGVEQLNNILVIGMTNRP---DLIDEALLRPGRLEVKME 402
>gi|1173370|sp|P34732|SC18_CANAL VESICULAR-FUSION PROTEIN SEC18 >gi|578124|emb|CAA47077| (X66467)
SEC18 [Candida albicans]
Length = 794
Score = 49.2 bits (115), Expect = 9e-06
Identities = 33/103 (32%), Positives = 61/103 (59%), Gaps = 12/103 (11%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAK--------EXKPSIIFIDEIDAI----GTKRSDSDR 169
GP+++ Y+G +R++FK A+ + +I DE+D++ G+ +SD
Sbjct: 344 GPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTG 403
Query: 168 TGDHEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
GD+ V +LL+++DGV + + + +D++D ALLR GR + +IE
Sbjct: 404 VGDNVVN----QLLSKMDGVDQ--LNNILVIGMTNRLDLIDTALLRPGRFEIQIE 452
>gi|487062|pir||S37606 SEC18 protein - yeast (Candida albicans)
Length = 794
Score = 49.2 bits (115), Expect = 9e-06
Identities = 33/103 (32%), Positives = 61/103 (59%), Gaps = 12/103 (11%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAK--------EXKPSIIFIDEIDAI----GTKRSDSDR 169
GP+++ Y+G +R++FK A+ + +I DE+D++ G+ +SD
Sbjct: 344 GPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTG 403
Query: 168 TGDHEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
GD+ V +LL+++DGV + + + +D++D ALLR GR + +IE
Sbjct: 404 VGDNVVN----QLLSKMDGVDQ--LNNILVIGMTNRLDLIDTALLRPGRFEIQIE 452
>gi|4104671 (AF038010) N-ethylmaleimide-sensitive fusion protein homolog
[Strongylocentrotus purpuratus]
Length = 537
Score = 48.8 bits (114), Expect = 1e-05
Identities = 35/103 (33%), Positives = 61/103 (58%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKR-SDSDRTGD 160
GP+++ ++G+ +R +F A++ + II DEIDAI +R S S TG
Sbjct: 82 GPEILNKFVGESEANIRKLFAAAEDEQKKMGNNSGLHIIIFDEIDAICKQRGSMSGSTGV 141
Query: 159 HEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL+++DGV + + L D++D ALLR GR++ ++E
Sbjct: 142 HDT--VVNQLLSKIDGV--EQLNNVLLIGMTNRKDLIDDALLRPGRLEVQME 189
>gi|4325346|gb|AAD17345| (AF128393) similar to N-ethylmaleimide sensitive fusion proteins;
contains similarity to ATPases (Pfam: PF00004,
Score=307.7, E=1.4e-88n N=1) [Arabidopsis thaliana]
Length = 772
Score = 48.8 bits (114), Expect = 1e-05
Identities = 37/103 (35%), Positives = 62/103 (59%), Gaps = 18/103 (17%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKPS-----------------IIFIDEIDAIGTKR 184
GP+++ ++G+ + VRD+F A++ + + +I DEIDAI R
Sbjct: 286 GPEVLSKFVGETEKNVRDLFADAEQDQRTLGKETLFFLICDASELHVIIFDEIDAICKSR 345
Query: 183 -SDSDRTGDHEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
S D TG H+ + +LL ++DGV + + L D+LD ALLR GR++ ++
Sbjct: 346 GSTRDGTGVHD--SIVNQLLTKIDGV--EALNNVLLIGMTNRKDLLDEALLRPGRLEVQV 401
Query: 6 E 4
E
Sbjct: 402 E 402
>gi|3193292 (AF069298) similar to ATPases associated with various cellular
activites (Pfam: AAA.hmm, score: 230.91) [Arabidopsis
thaliana]
Length = 371
Score = 48.4 bits (113), Expect = 2e-05
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ ++ + + G+G + V+ VF LA + PS+IF+DE+D++ +R + G+HE
Sbjct: 132 FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR---ENPGEHEAM 188
Query: 147 RTML-ELLNQLDGV 109
R M E + DG+
Sbjct: 189 RKMKNEFMVNWDGL 202
>gi|4115900 (AF015488) N-ethylmaleimide sensitive fusion protein [Manduca
sexta]
Length = 743
Score = 47.6 bits (111), Expect = 3e-05
Identities = 36/103 (34%), Positives = 59/103 (56%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKP--------SIIFIDEIDAIGTKR-SDSDRTGD 160
GPQ++ Y+G+ +R +F A+E + II DEIDAI R S TG
Sbjct: 287 GPQILDKYVGESEANIRPLFADAEEEEKRCGPNSGLHIIIFDEIDAICKARGSVGGNTGV 346
Query: 159 HEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL+++DGV + + + D++D ALLR GR++ ++E
Sbjct: 347 HDT--VVNQLLSKIDGVDQ--LNNILVIGMTNRRDMIDEALLRPGRLEVQME 394
>gi|1171772|sp|P46461|NSF1_DROME VESICULAR-FUSION PROTEIN NSF1 (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN 1) (NEM-SENSITIVE FUSION PROTEIN 1) (COMATOSE
PROTEIN) >gi|507752 (U09373) N-ethylmaleimide-sensitive
fusion protein [Drosophila melanogaster]
Length = 745
Score = 47.3 bits (110), Expect = 4e-05
Identities = 36/103 (34%), Positives = 60/103 (57%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKP--------SIIFIDEIDAIGTKR-SDSDRTGD 160
GPQ++ Y+G+ VR +F A+E + II DEIDAI +R S + +G
Sbjct: 287 GPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGV 346
Query: 159 HEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL ++DGV + + + D++D ALLR GR++ ++E
Sbjct: 347 HDT--VVNQLLTKIDGVDQ--LNNILVIGMTNRRDMIDEALLRPGRLEVQME 394
>gi|2879845|emb|CAA76204| (Y16416) putative N-ethylmaleimide sensitive fusion protein [Loligo
pealei]
Length = 600
Score = 46.9 bits (109), Expect = 5e-05
Identities = 36/103 (34%), Positives = 58/103 (55%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKE--------XKPSIIFIDEIDAIGTKR-SDSDRTGD 160
GPQ++ Y+G+ +R +F A+E K II DEIDAI +R S TG
Sbjct: 144 GPQILDKYVGESEANIRKLFADAEEEEKARGRNSKLHIIIFDEIDAICKQRGSVGGGTGV 203
Query: 159 HEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL ++DGV + + + D++D AL R GR++ ++E
Sbjct: 204 HDT--VVNQLLTKIDGV--EQLNNILVIGMTNRRDLIDDALTRPGRMEVQME 251
>gi|3878055|emb|CAB09531| (Z96100) Similarity to Drosophila vesicular-fusion protein NSF
(SW:NSF_DROME); cDNA EST yk240h6.3 comes from this gene
[Caenorhabditis elegans] >gi|3881462|emb|CAB01976|
(Z79698) Similarity to Drosophila vesicular-fusion
protein NSF (SW:NSF_DROME); cDNA EST yk240h6.3 comes
from this gene [Caenorhabditis elegans]
Length = 824
Score = 46.5 bits (108), Expect = 6e-05
Identities = 36/103 (34%), Positives = 58/103 (55%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKE--------XKPSIIFIDEIDAIGTKRSDSDRTGDH 157
GPQ++ Y+G+ VR +F A+E II DEIDAI +R G
Sbjct: 364 GPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQR--GSMAGSS 421
Query: 156 EVQRTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
V T++ +LL+++DGV + + + D++D ALLR GR++ ++E
Sbjct: 422 SVHDTVVNQLLSKMDGV--EQLNNILVIGMTNRRDMIDEALLRPGRLEVQME 471
>gi|2492503|sp|Q94392|NSFH_CAEEL VESICULAR-FUSION PROTEIN NSF HOMOLOG (N-ETHYLMALEIMIDE-SENSITIVE
FUSION PROTEIN) (NEM-SENSITIVE FUSION PROTEIN)
Length = 758
Score = 46.5 bits (108), Expect = 6e-05
Identities = 36/103 (34%), Positives = 58/103 (55%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKE--------XKPSIIFIDEIDAIGTKRSDSDRTGDH 157
GPQ++ Y+G+ VR +F A+E II DEIDAI +R G
Sbjct: 298 GPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQR--GSMAGSS 355
Query: 156 EVQRTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
V T++ +LL+++DGV + + + D++D ALLR GR++ ++E
Sbjct: 356 SVHDTVVNQLLSKMDGV--EQLNNILVIGMTNRRDMIDEALLRPGRLEVQME 405
>gi|1255387 (U53149) coded for by C. elegans cDNA yk74g12.5; coded for by C.
elegans cDNA yk74g12.3; similar to members of the AAA
family of ATPase [Caenorhabditis elegans]
Length = 826
Score = 46.1 bits (107), Expect = 8e-05
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 17/99 (17%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFI----------------DEIDAI 196
F ++ L ++GD + +R +F++A+ +PSIIFI DEID+I
Sbjct: 598 FFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIGKREMYTFEAKQYNFSDEIDSI 657
Query: 195 GTKRSDSDRTGDHEVQRTM-LELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLR 31
+RS+ D EV R M E L Q DG S ++ + LD A+LR
Sbjct: 658 LCERSEKDA----EVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR 709
>gi|2650149 (AE001071) AAA superfamily ATPase [Archaeoglobus fulgidus]
Length = 409
Score = 46.1 bits (107), Expect = 8e-05
Identities = 26/101 (25%), Positives = 53/101 (51%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
+ Y+G+ ++ + +F +A+ P I+FIDE D + R+ + T+L+ ++
Sbjct: 234 ITSQYLGETSKNIEKIFDIARMMSPCILFIDEFDYVAKMRTSDEHAAIKRAVNTLLKSID 293
Query: 123 QLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
++ V +++ + P+ +LDPA+ R R D+ IEF
Sbjct: 294 DINLVEDGVLL-IAATNHPS---LLDPAVWR--RFDKVIEF 328
>gi|4455359|emb|CAB36769| (AL035524) putative protein [Arabidopsis thaliana]
Length = 726
Score = 46.1 bits (107), Expect = 8e-05
Identities = 31/107 (28%), Positives = 58/107 (53%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ ++ + + G+ + VR +F LA + P+IIF+DE+D++ +R+ R G+HE
Sbjct: 476 FINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRT---RVGEHEAM 532
Query: 147 RTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
R + E + DG+ S ++ + LD A++R R +R+I
Sbjct: 533 RKIKNEFMTHWDGLMSNAGDRILVLAATNRPFDLDEAIIR--RFERRI 578
>gi|924933 (U28836) N-ethylmaleimide sensitive fusion protein-2 [Drosophila
melanogaster]
Length = 744
Score = 45.7 bits (106), Expect = 1e-04
Identities = 35/103 (33%), Positives = 59/103 (56%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKP--------SIIFIDEIDAIGTKR-SDSDRTGD 160
GPQ++ Y+G+ +R +F A+E + II DEIDAI R S + +G
Sbjct: 284 GPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGV 343
Query: 159 HEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL ++DGV + + + D++D ALLR GR++ ++E
Sbjct: 344 HDT--VVNQLLAKIDGV--EQLNNILVIGMTNRRDMIDEALLRPGRLEVQME 391
>gi|1709351|sp|P54351|NSF2_DROME VESICULAR-FUSION PROTEIN NSF2 (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN 2) (NEM-SENSITIVE FUSION PROTEIN 2) >gi|973317
(U30502) Drosophila N-ethylmaleimide-sensitive fusion
protein 2 [Drosophila melanogaster]
Length = 752
Score = 45.7 bits (106), Expect = 1e-04
Identities = 35/103 (33%), Positives = 59/103 (56%), Gaps = 9/103 (8%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLAKEXKP--------SIIFIDEIDAIGTKR-SDSDRTGD 160
GPQ++ Y+G+ +R +F A+E + II DEIDAI R S + +G
Sbjct: 292 GPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGV 351
Query: 159 HEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
H+ + +LL ++DGV + + + D++D ALLR GR++ ++E
Sbjct: 352 HDT--VVNQLLAKIDGV--EQLNNILVIGMTNRRDMIDEALLRPGRLEVQME 399
>gi|585965|sp|P18759|SC18_YEAST VESICULAR-FUSION PROTEIN SEC18 >gi|626919|pir||S45477 SEC18 protein
- yeast (Saccharomyces cerevisiae)
>gi|433846|emb|CAA53939| (X76294) ORF YBRO736; identical
to SEC18 S.cerevisiae [Saccharomyces cerevisiae]
>gi|536340|emb|CAA85025| (Z35949) ORF YBR080c
[Saccharomyces cerevisiae]
Length = 758
Score = 45.3 bits (105), Expect = 1e-04
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLA--------KEXKPSIIFIDEIDAIGTK---RSDSDRT 166
GP+++ Y+G +R++FK A +E II DE+D++ + R D
Sbjct: 308 GPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTGV 367
Query: 165 GDHEVQRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
GD+ V +LL ++DGV + + + D++D ALLR GR + ++E
Sbjct: 368 GDNVVN----QLLAKMDGVDQ--LNNILVIGMTNRKDLIDSALLRPGRFEVQVE 415
>gi|462627|sp|P28737|MSP1_YEAST MSP1 PROTEIN (TAT-BINDING HOMOLOG 4) >gi|1362427|pir||A49506 MSP1
protein - yeast (Saccharomyces cerevisiae)
>gi|404217|emb|CAA48191| (X68055) MSP1 protein
[Saccharomyces cerevisiae] >gi|531756|emb|CAA56956|
(X81069) probable regulatory subunit of 26S protease
[Saccharomyces cerevisiae] >gi|1323004|emb|CAA97015|
(Z72813) ORF YGR028w [Saccharomyces cerevisiae]
Length = 362
Score = 44.1 bits (102), Expect = 3e-04
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + ++ + G+ ++V +F LA + +P IIFIDEID+ +RS + DHEV
Sbjct: 154 FISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSST----DHEVT 209
Query: 147 RTM-LELLNQLDGV 109
T+ E + DG+
Sbjct: 210 ATLKAEFMTLWDGL 223
>gi|2584876 (AF006826) N-ethylmaleimide-sensitive fusion protein [Dictyostelium
discoideum]
Length = 738
Score = 43.8 bits (101), Expect = 4e-04
Identities = 34/105 (32%), Positives = 59/105 (55%), Gaps = 9/105 (8%)
Query: 318 LAGPQLVQMYIGDGARLVRDVFKLAKEXKPS--------IIFIDEIDAIGTKRSDSDRTG 163
++GP ++ Y+G +R +F+ A+ + + II DE+DAI R R G
Sbjct: 289 VSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSRGS--RQG 346
Query: 162 DHEVQRTML-ELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
D V +++ +LL +DGV S + + + D++D ALLR GR++ +E
Sbjct: 347 DSGVGDSVVNQLLAMIDGVES--LNNILVIGMTNRKDMIDEALLRPGRLEVHVE 398
>gi|4469019|emb|CAB38280| (AL035602) putative protein [Arabidopsis thaliana]
Length = 398
Score = 43.4 bits (100), Expect = 5e-04
Identities = 23/63 (36%), Positives = 36/63 (56%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + L+ + GD +LV VF LA + +P+IIFIDE+++ +R R+ DHE
Sbjct: 147 FINVRVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVESFLGQR----RSTDHEAM 202
Query: 147 RTM 139
M
Sbjct: 203 ANM 205
>gi|172563 (M20662) SEC18 gene product [Saccharomyces cerevisiae]
Length = 757
Score = 42.6 bits (98), Expect = 0.001
Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 12/103 (11%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLA--------KEXKPSIIFIDEIDAIGTK---RSDSDRT 166
GP+++ Y+G +R++FK A +E II DE+D++ + R D
Sbjct: 308 GPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTGV 367
Query: 165 GDHEVQRTMLEL-LNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
GD+ V + + ++ ++QL+ + +++ + D++D ALLR GR + ++E
Sbjct: 368 GDNVVNQLLAKMDVDQLNNI---LVIGM-----TNRKDLIDSALLRPGRFEVQVE 414
>gi|3258279|dbj|BAA30962| (AP000007) 141aa long hypothetical protein [Pyrococcus horikoshii]
Length = 141
Score = 42.6 bits (98), Expect = 0.001
Identities = 42/94 (44%), Positives = 51/94 (53%)
Query: 5 SIFLSILPDLNNAGSNISIXVGCRYNLNFIIILD*TPSN*LSNSNIVLCTS*SPVLSLSD 184
SI LS P L AGS S + + + L PS S+ L ++ SPV SL
Sbjct: 53 SISLSKRPGLLKAGSKASGLLVAPITIT--LPLPFKPSIKASSWATTLFST-SPVTSL-- 107
Query: 185 LFVPIASISSIKIIEGFXSFANLNTSLTNLAPSP 286
LF IASISSIKII+G S A+LNTSL + SP
Sbjct: 108 LFGAIASISSIKIIDGAFSSASLNTSLNLSSLSP 141
>gi|172564 (M20662) SEC18 gene product short form (5' end could be 604)
[Saccharomyces cerevisiae]
Length = 739
Score = 42.6 bits (98), Expect = 0.001
Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 12/103 (11%)
Query: 312 GPQLVQMYIGDGARLVRDVFKLA--------KEXKPSIIFIDEIDAIGTK---RSDSDRT 166
GP+++ Y+G +R++FK A +E II DE+D++ + R D
Sbjct: 290 GPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTGV 349
Query: 165 GDHEVQRTMLEL-LNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
GD+ V + + ++ ++QL+ + +++ + D++D ALLR GR + ++E
Sbjct: 350 GDNVVNQLLAKMDVDQLNNI---LVIGM-----TNRKDLIDSALLRPGRFEVQVE 396
>gi|2492527|sp|P55530|Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY ATPASE Y4KL >gi|2182488 (AE000081)
Y4kL [Rhizobium sp. NGR234]
Length = 330
Score = 41.8 bits (96), Expect = 0.002
Identities = 23/66 (34%), Positives = 41/66 (61%), Gaps = 1/66 (1%)
Query: 306 QLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDH-EVQRTMLEL 130
+L+ Y+G+ A +R F+ A++ +P ++F DE DA+ R DS G+H E++R + L
Sbjct: 153 RLISSYLGETATNIRKTFEFARK-QPCVLFFDEFDALARTRDDS---GEHNELRRVVNSL 208
Query: 129 LNQLDGV 109
L +D +
Sbjct: 209 LLFIDNM 215
>gi|3659891 (AF091834) N-ethylmaleimide sensitive factor NSF [Rattus
norvegicus]
Length = 178
Score = 39.9 bits (91), Expect = 0.006
Identities = 30/74 (40%), Positives = 47/74 (62%), Gaps = 2/74 (2%)
Query: 225 IIFIDEIDAIGTKR-SDSDRTGDHEVQRTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDI 52
II DEIDAI +R S + TG H+ + +LL+++DGV I+ + + +P D+
Sbjct: 13 IIIFDEIDAICKQRGSMAGSTGVHDT--VVNQLLSKIDGVEQLNNILVIGMTNRP---DL 67
Query: 51 LDPALLRSGRIDRKIE 4
+D ALLR GR++ K+E
Sbjct: 68 IDEALLRPGRLEVKME 83
>gi|3377851 (AF076274) contains similarity to ATPases associated with various
cellular activities (Pfam: AAA.hmm, score: 155.05)
[Arabidopsis thaliana]
Length = 536
Score = 39.9 bits (91), Expect = 0.006
Identities = 38/101 (37%), Positives = 50/101 (48%), Gaps = 2/101 (1%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKP-SIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLE-L 130
++ Y G+ RL+ VF A E +IIF+DEIDA R DS+ HE R +L L
Sbjct: 324 VMSKYYGESERLLGAVFSQANELPDGAIIFLDEIDAFAISR-DSEM---HEATRRVLSVL 379
Query: 129 LNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
L Q+DG K+ + LDPAL+ R D I F
Sbjct: 380 LRQIDGFEQE--KKVVVIAATNRKQDLDPALI--SRFDSMIMF 418
>gi|1709135|sp|P54815|MSP1_CAEEL MSP1 PROTEIN HOMOLOG >gi|3878242|emb|CAA93516| (Z69664) Similarity
to Yeast MSP1 protein (TAT-binding homolog 4)
(SW:MSP1_YEAST) [Caenorhabditis elegans]
Length = 357
Score = 39.5 bits (90), Expect = 0.008
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSD 172
F+ L L + G+ +L VF +A++ +P+IIFIDEID+ R D
Sbjct: 160 FINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHD 211
>gi|3877502|emb|CAA90252| (Z49967) ATP-binding protein (CDC48/PAS1/SEC18 family) with strong
similarity to the yeast BCS1 protein (Swiss Prot
accession number P32839); cDNA EST EMBL:C07371 comes
from this gene; cDNA EST EMBL:C08716 comes from this
gene ...
Length = 442
Score = 39.1 bits (89), Expect = 0.010
Identities = 31/76 (40%), Positives = 43/76 (55%), Gaps = 4/76 (5%)
Query: 228 SIIFIDEIDAIGTKRSD--SDRTGDHEVQR-TMLELLNQLDGV*SRIIMKLRL*RQPTX- 61
S++ +++IDA R D S+ + R T LLN LDGV + RL T
Sbjct: 297 SVVILEDIDAAFVSREDPMSNHPAYQGLSRVTFSGLLNALDGV---ACAEERLTFMTTNY 353
Query: 60 IDILDPALLRSGRIDRKIEF 1
++ LDPAL+R GR+DRK F
Sbjct: 354 VERLDPALIRPGRVDRKQYF 373
>gi|758793 (U23723) orf300 [Escherichia coli]
Length = 300
Score = 38.3 bits (87), Expect = 0.018
Identities = 30/101 (29%), Positives = 48/101 (46%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
++ Y+G ++ V A P ++ +DE DAI KR D+ G E++R + LL
Sbjct: 160 VMSSYLGKTGNNIKAVLNYASSF-PCVLLLDEFDAIAKKRDDATDVG--ELKRLVTVLLQ 216
Query: 123 QLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
+D + + L ++LDPA R R DR I+F
Sbjct: 217 AIDEWPNTSV----LIAATNHAELLDPAAWR--RFDRVIDF 251
>gi|2506091|sp|P32839|BCS1_YEAST BCS1 PROTEIN >gi|2131192|pir||S61170 BCS1 protein precursor - yeast
(Saccharomyces cerevisiae) >gi|849196 (U28373) Bcs1p:
essential for the expression of the Rieske iron-sulphur
protein (Swiss Prot. accession number P32839)
[Saccharomyces cerevisiae]
Length = 456
Score = 38.3 bits (87), Expect = 0.018
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 228 SIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDI 52
SI+ +++IDA KRS + G H T LLN LDGV S + P +
Sbjct: 314 SILLLEDIDAAFNKRSQTGEQGFHS-SVTFSGLLNALDGVTSSEETITFMTTNHP---EK 369
Query: 51 LDPALLRSGRIDRKI 7
LD A++R GRID K+
Sbjct: 370 LDAAIMRPGRIDYKV 384
>gi|2160153 (AC000375) Similar to Xenopus TER ATPase (gb|X54240). [Arabidopsis
thaliana]
Length = 330
Score = 36.7 bits (83), Expect = 0.053
Identities = 17/40 (42%), Positives = 28/40 (69%), Gaps = 4/40 (10%)
Query: 315 AGPQLVQM----YIGDGARLVRDVFKLAKEXKPSIIFIDEIDAI 196
AG L+ M + +G + V+ VF LA + PSIIF+DE++++
Sbjct: 119 AGANLINMSMSRWFSEGEKYVKAVFSLASKISPSIIFLDEVESM 162
>gi|687922|bbs|156028 PA700 subunit p56=ATP-dependent 20 S proteasome activator [cattle,
red blood cells, Peptide Partial, 21 aa, segment 2 of 3]
Length = 21
Score = 36.4 bits (82), Expect = 0.069
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 249 LAKEXKPSIIFIDEIDAIGTK 187
+A+E PSI+FIDEIDAIGTK
Sbjct: 1 VAEEHAPSIVFIDEIDAIGTK 21
>gi|3602963|gb|AAC35624| (AF041468) hypothetical chloroplast RF46 [Guillardia theta]
Length = 506
Score = 36.0 bits (81), Expect = 0.091
Identities = 31/103 (30%), Positives = 46/103 (44%)
Query: 324 LKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQR 145
LKL +L IG+ VR + + A+ P I++IDEID T + ++ +G +R
Sbjct: 304 LKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSG--TTKR 361
Query: 144 TMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRID 16
+ L S + + ID L P LLR GR D
Sbjct: 362 VFGTFITWLSEKKSPVFVV----ATANNIDSLPPELLRKGRFD 400
>gi|1749480|dbj|BAA13798| (D89136) similar to Saccharomyces cerevisiae BCS1 protein,
SWISS-PROT Accession Number P32839 [Schizosaccharomyces
pombe]
Length = 419
Score = 35.2 bits (79), Expect = 0.16
Identities = 27/73 (36%), Positives = 38/73 (51%), Gaps = 3/73 (4%)
Query: 228 SIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDGV*S---RIIMKLRL*RQPTXI 58
+++ ++++D+ R S G H T LLN LDGV S RII
Sbjct: 266 AVVLLEDVDSAFQGRERSGEVGFH-ANVTFSGLLNALDGVTSSDERIIFMTT-----NHP 319
Query: 57 DILDPALLRSGRIDRK 10
+ LDPAL+R GR+D K
Sbjct: 320 EKLDPALVRPGRVDVK 335
>gi|2224422|dbj|BAA57906| (AB001684) cell division protein FtsH [Chlorella vulgaris]
Length = 930
Score = 34.0 bits (76), Expect = 0.35
Identities = 20/46 (43%), Positives = 30/46 (64%), Gaps = 10/46 (21%)
Query: 318 LAGPQLVQMYIGDGARLVRD----------VFKLAKEXKPSIIFIDEIDAIGTKRS 181
LAG V + + G+ L+ VF+ A++ P I+FIDEID + +KRS
Sbjct: 237 LAGEAQVPVIVLSGSSLMEPGESAAFKLQLVFQEARQLAPCIVFIDEIDTLSSKRS 292
>gi|3023786|sp|P56369|FTSH_CHLVU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2224421|dbj|BAA57905|
(AB001684) ORF1720 [Chlorella vulgaris]
Length = 1720
Score = 34.0 bits (76), Expect = 0.35
Identities = 20/46 (43%), Positives = 30/46 (64%), Gaps = 10/46 (21%)
Query: 318 LAGPQLVQMYIGDGARLVRD----------VFKLAKEXKPSIIFIDEIDAIGTKRS 181
LAG V + + G+ L+ VF+ A++ P I+FIDEID + +KRS
Sbjct: 1027 LAGEAQVPVIVLSGSSLMEPGESAAFKLQLVFQEARQLAPCIVFIDEIDTLSSKRS 1082
>gi|2795916 (AF038195) unknown [Homo sapiens] >gi|3599962 (AF026849) h-bcs1
[Homo sapiens]
Length = 419
Score = 33.6 bits (75), Expect = 0.46
Identities = 28/73 (38%), Positives = 41/73 (55%), Gaps = 9/73 (12%)
Query: 228 SIIFIDEIDAIGTKRSDSDRTGDHEVQR------TMLELLNQLDGV*S---RIIMKLRL* 76
S++ ++++DA R D ++ V+ T LLN LDGV S RI+
Sbjct: 277 SLVLLEDVDAAFLSR---DLAVENPVKYQGLGRLTFSGLLNALDGVASTEARIVFMTT-- 331
Query: 75 RQPTXIDILDPALLRSGRIDRK 10
+D LDPAL+R GR+D K
Sbjct: 332 ---NHVDRLDPALIRPGRVDLK 350
>gi|258018|bbs|116340 (S47190) necessary for expression of ubiquinol-cytochrome c
reductase complex [Saccharomyces cerevisiae]
Length = 456
Score = 33.6 bits (75), Expect = 0.46
Identities = 27/74 (36%), Positives = 37/74 (49%), Gaps = 1/74 (1%)
Query: 228 SIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDI 52
SI+ +++IDA KRS + G H T LLN D V S + P +
Sbjct: 314 SILLLEDIDAAFNKRSQTGEQGFHS-SVTFSGLLNAQDSVTSSEETITFMTTNHP---EK 369
Query: 51 LDPALLRSGRIDRKI 7
LD A++R GRID K+
Sbjct: 370 LDAAIMRPGRIDYKV 384
>gi|624070 (U42580) contains ATP/GTP-binding site motif A; contains
DDC/GAD/HDC/TyrDC pyridoxal phosphate attachment site;
similar to yeast BCS1 protein, corresponds to Swiss-Prot
Accession Number P32839 [Paramecium bursaria Chlorella
virus 1]
Length = 599
Score = 33.2 bits (74), Expect = 0.60
Identities = 26/64 (40%), Positives = 36/64 (55%), Gaps = 6/64 (9%)
Query: 192 TKRSDSDRT---GDHEVQRTMLELLNQLDGV*S---RIIMKLRL*RQPTXIDILDPALLR 31
TK + S+R +H + T+ LLN LDGV RI++ ++LDPAL+R
Sbjct: 473 TKHNTSERELIKDEHPERLTLATLLNILDGVLECPGRILIV-----SSNHPEMLDPALIR 527
Query: 30 SGRIDRKIEF 1
GRID F
Sbjct: 528 PGRIDIMANF 537
>gi|3257096|dbj|BAA29779| (AP000003) 146aa long hypothetical protein [Pyrococcus horikoshii]
Length = 146
Score = 33.2 bits (74), Expect = 0.60
Identities = 19/39 (48%), Positives = 22/39 (55%)
Query: 197 IASISSIKIIEGFXSFANLNTSLTNLAPSPMYICTNCGP 313
IASISSIKII G A L SL + SP ++ GP
Sbjct: 18 IASISSIKIIAGAACLAFLKISLILFSLSPTHLLNTSGP 56
>gi|4539301|emb|CAB39604| (AL049480) putative mitochondrial protein [Arabidopsis thaliana]
Length = 618
Score = 32.1 bits (71), Expect = 1.4
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 19/81 (23%)
Query: 249 LAKEXKPSIIFIDEIDAIG--TKRSDSDRTGDHEVQR-----------------TMLELL 127
L K SII I++ID T R+ TG + T+ LL
Sbjct: 395 LMKTSSKSIIVIEDIDCSINLTNRNKKQSTGSYNEPEMLTGSGLGDDLGDGNTITLSGLL 454
Query: 126 NQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
N DG+ S + I+ LDPALLRSGR+D I
Sbjct: 455 NFTDGLWSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHI 494
>gi|3877493|emb|CAA88471| (Z48583) similar to ATPases associated with various cellular
activities (AAA); cDNA EST EMBL:Z14623 comes from this
gene; cDNA EST EMBL:D75090 comes from this gene; cDNA
EST EMBL:D72255 comes from this gene; cDNA EST yk200e4.5
...
Length = 610
Score = 32.1 bits (71), Expect = 1.4
Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 282 DGARLVRDVFKLA-KEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDGV* 106
DG + VF A K K I+FIDE DA KRS + G E R L G
Sbjct: 399 DGVSAIHKVFDWASKSRKGLIVFIDEADAFLQKRS---KNGMSEDTRAALNAFLFRTGEQ 455
Query: 105 SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
SR M + QP D + R D+ +EF
Sbjct: 456 SRKFMLVVASNQPEQFD-----WAVNDRFDQLVEF 485
>gi|1169753|sp|P45219|FTH2_HAEIN CELL DIVISION PROTEIN FTSH HOMOLOG 2 >gi|1073924|pir||B64125 cell
division protein (ftsH) homolog - Haemophilus influenzae
(strain Rd KW20) >gi|1574299 (U32824) cell division
ftsH-related protein [Haemophilus influenzae Rd]
Length = 381
Score = 32.1 bits (71), Expect = 1.4
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 198 IGTKRSDSDRTGDHEVQRTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGR 22
+G +R G E ++T+ ++L ++DG ++ + +P D+LDPAL R GR
Sbjct: 1 MGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRP---DVLDPALTRPGR 57
Query: 21 IDRKI 7
DR++
Sbjct: 58 FDRQV 62
>gi|3347992 (AF076598) RcaA [Dictyostelium discoideum]
Length = 345
Score = 31.3 bits (69), Expect = 2.3
Identities = 13/17 (76%), Positives = 15/17 (87%)
Query: 57 DILDPALLRSGRIDRKI 7
D+LDPALLR GR DR+I
Sbjct: 3 DVLDPALLRPGRFDRQI 19
>gi|687933|bbs|156039 PA700 subunit p48=ATP-dependent 20 S proteasome activator [cattle,
red blood cells, Peptide Partial, 18 aa, segment 5 of 7]
Length = 18
Score = 30.9 bits (68), Expect = 3.0
Identities = 14/18 (77%), Positives = 15/18 (82%)
Query: 240 EXKPSIIFIDEIDAIGTK 187
E P+IIFIDEIDAI TK
Sbjct: 1 ENAPAIIFIDEIDAIATK 18
>gi|1351773|sp|P49541|YC46_ODOSI HYPOTHETICAL 56.9 KD PROTEIN YCF46 (ORF497)
>gi|1185176|emb|CAA91659| (Z67753) ORF497, homologous to
Porphyra ORF491 [Odontella sinensis]
Length = 497
Score = 30.5 bits (67), Expect = 4.0
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 324 LKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEID-AIGTKRSDSDRTGDHEVQ 148
LKL +L +G+ +R + +A+ P I++IDE+D A S D + V
Sbjct: 288 LKLDVGRLFGGIVGESESRLRQMIDVAETLSPCILWIDEMDKAFSNNDSRGDSGTSNRVL 347
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRID 16
T + L S + + +D+L ++R GR D
Sbjct: 348 ATFISWL-------SEKTKPVFVVATANNVDLLPLEIIRKGRFD 384
>gi|2911393 (AF045927) cell division cycle protein 48 [Hordeum vulgare]
Length = 80
Score = 30.1 bits (66), Expect = 5.2
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 156 EVQRTML-ELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
EV+R ++ +LL +DG+ SR ++ + +P ID PAL R GR DR+I+
Sbjct: 1 EVERRIVSQLLTLIDGLKSRAHVIVMGTTNRPNSID---PALRRFGRFDREID 50
>gi|1001469|dbj|BAA10095| (D63999) cell division cycle protein [Synechocystis sp.]
Length = 501
Score = 29.7 bits (65), Expect = 6.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 288 IGDGARLVRDVFKLAKEXKPSIIFIDEID---AIGTKRSDSD 172
+G +R+ K A+ P+I+FIDE+D A G DSD
Sbjct: 300 VGRSEANLRNALKTAESISPAILFIDELDKAFAGGAGSGDSD 341
>gi|3023975|sp|Q44772|HSLU_BORBU HEAT SHOCK PROTEIN HSLU >gi|1165279 (U43739) HsLU [Borrelia
burgdorferi]
Length = 448
Score = 29.7 bits (65), Expect = 6.8
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 267 VRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELL 127
+ D+ K +K IIFIDEID I K + VQR +L ++
Sbjct: 246 ISDIAK-SKVENMGIIFIDEIDKIAAKNRSGNDVSREGVQRDILPII 291
>gi|1196314 (L76303) heat shock response protein [Borrelia burgdorferi]
>gi|1234880|emb|CAA65468| (X96685) heat shock protein
[Borrelia burgdorferi]
Length = 448
Score = 29.7 bits (65), Expect = 6.8
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 267 VRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELL 127
+ D+ K +K IIFIDEID I K + VQR +L ++
Sbjct: 246 ISDIAK-SKVENMGIIFIDEIDKIAAKNRSGNDVSREGVQRDILPII 291
>gi|2688171 (AE001137) heat shock protein (hslU) [Borrelia burgdorferi]
Length = 455
Score = 29.7 bits (65), Expect = 6.8
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 267 VRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELL 127
+ D+ K +K IIFIDEID I K + VQR +L ++
Sbjct: 253 ISDIAK-SKVENMGIIFIDEIDKIAAKNRSGNDVSREGVQRDILPII 298
>gi|79706|pir||JQ1233 hypothetical 41.8K protein - Synechocystis sp
>gi|217104|dbj|BAA00888| (D10004) ORF376 [Synechocystis
sp.] >gi|243472|bbs|77748 (S77740) ORF 376
[Synechocystis, PCC 6803, Peptide, 376 aa]
[Synechocystis]
Length = 376
Score = 29.7 bits (65), Expect = 6.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 288 IGDGARLVRDVFKLAKEXKPSIIFIDEID---AIGTKRSDSD 172
+G +R+ K A+ P+I+FIDE+D A G DSD
Sbjct: 182 VGRSEANLRNALKTAESISPAILFIDELDKAFAGGAGSGDSD 223
>gi|1001376|dbj|BAA10866| (D64006) ATP-dependent protease ATPase subunit [Synechocystis sp.]
Length = 445
Score = 29.3 bits (64), Expect = 9.0
Identities = 16/44 (36%), Positives = 22/44 (49%)
Query: 243 KEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDG 112
+E + II+IDEID I K + T D + LL L+G
Sbjct: 196 EEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEG 239
>gi|2351824 (U92039) ATP-dependent Clp protease, regulatory subunit
[Synechococcus PCC7942]
Length = 450
Score = 29.3 bits (64), Expect = 9.0
Identities = 16/44 (36%), Positives = 22/44 (49%)
Query: 243 KEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDG 112
+E + II+IDEID I K + T D + LL L+G
Sbjct: 201 EEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEG 244
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61172646
Number of Sequences: 369800
Number of extensions: 990408
Number of successful extensions: 3140
Number of sequences better than 10.0: 596
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2569
Number of HSP's gapped (non-prelim): 342
length of query: 109
length of database: 113,023,754
effective HSP length: 50
effective length of query: 58
effective length of database: 94533754
effective search space: 5482957732
effective search space used: 5482957732
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)