#NEXUS [tbp: TATA-box binding protien] [Name: mqtbp2 Macrotrachela quadricornifera copy 2] [Name: prtbp2 Philodina roseola copy 2] [Name: mqtbp1 Macrotrachela quadricornifera copy 1] [Name: prtbp1 Philodina roseola copy 1] [Name: hctbp1 Habrotrocha consatricta copy 1] [Name: hctbp2 Habrotrocha constricta copy 2] [Name: bptbp Brachionus plicatilis] begin data; dimensions ntax=7 nchar=465; format datatype=dna interleave missing=n gap=-; matrix mqtbp2 cttggctgtccattagattt gaaacgcatcgctttacaag ctcgaaatgctgaatataat cccaaacgtttcgcagctgt tatcatgtgtattcgatcac prtbp2 cttggctgtccattagattt gaaacgcatcgctttacaag ctcgaaatgctgaatataat cccaaacgtttcgcagctgt tattatgcgtattcgatcac mqtbp1 ctcggttgtccattagattt gaaacgcatcgctttacaag ctcgaaatgctgaatataat cccaaacgtttcgcagctgt tattatgcgtattcgatcac prtbp1 ctcggctgtccattagattt gaaacgcatcgctttacaag ctcgaaatgctgaatataat cccaaacgtttcgcagctgt tattatgcgtattcgatcac hctbp1 cttggttgtccattggattt aaaacgtattgcattacaag ctcgaaatgctgaatataat cctaaacgttttgctgctgt tattatgcgtatacgaaatc hctbp2 cttggttgtcaattagattt aaaacgtattgcattacaag cacgtaatgctgaatataat ccaaaacgttttgctgctgt tattatgcgtattcgtagtc bptbp ctcggctgcaacctagagct gaaaaaaatagccctgtacg ccagaaacgccgagtacaac ccgaagcgttttgctgccgt cattatgcgcatccggtcgc mqtbp2 cacgaacaacagctttgatc ttcggttcaggcaaaatggt ttgtacaggagcgaaaagtg aaaatgattctcttcaagct gctcgacgttatgcgcgtgt prtbp2 cacgaacaacagctttgatc tttggttcaggcaaaatggt ttgtacaggagcgaaaagtg aaaatgattctcttcaagct gctcgacgttatgcgcgtgt mqtbp1 cacgaacaacggctttgatc tttggttcaggcaaaatggt ttgtacaggagcgaaaagtg aaaatnattctcttcaagcc gctcggcgttatgcgcgtgt prtbp1 cacgaacaacggctttgatc tttggttcaggcaaaatggt ttgtacaggagcaaaaagtg aaaatnattctcttcaagcc gctcgacgttatgcgcgtgt hctbp1 cacgaacaacagctttaata tttggttcaggaaaaatggt ttgcacaggagctaaaagtg aagaagattcattacaagct gctcgacgttatgctcgagt hctbp2 cacgaacaacagctttgata tttagttcgggaaaaatggt ttgtacaggtgcaaaaagtg aagaagattctattcaagca gctcgacgttatgctcgtgt bptbp caagaaccactgcgctgata ttcagctctggcaaaatggt gtgcacaggagccaagagcg aggaggactcgcgactggcg gccagaaagtatgcgcgcat mqtbp2 gatacaaaaattaggttttc ctgtaagaattttctcgttg attcgttgaggaacgaaaag gaacgctttcattcgttcga actttttttaaggcaaaatt prtbp2 gatacaaaaattaggttttc ctgtaagatttttctcgttg attcgttgaggaacaaaaag gaacgttttcattcgttcga actttttttaaggcaaaatt mqtbp1 gatacaaaaattaggttttc ctgtaagatccttctcgttg attcgttgagaaaaaaaagc gaacgttttcattcgttcga ctttttttcaaggcgaaatt prtbp1 gatacaaaaattaggttttc ctgtaagatttttctcgttg attcgttgaggaaaaaaaac gaacgttttcattcgttcga ctttttttcaaggcgaaatt hctbp1 tatacaaaaactaggttttc ctgtgaggatat-----tta tttccttaatta-------- ----ggttttattctaaata atcttttttcaggcaaaatt hctbp2 tattcaaaaacttggttttc cagtaaattttcaaatctt- ---------ctaaatattct ttttttatgtaaagaggaaa aaattatttcaggccaaatt bptbp cattcagaagctgggctttc cg------------------ -------------------- -------------------- ------------gccaagtt mqtbp2 tcgtgattttaaaattcaga atatggtcggtagtgtcgat gtgaaatttcctatacgatt agaagcgctggttttaaaac attatcaattttgcaggtaa prtbp2 tcgtgattttaaaattcaga atatggtcggtagtgtcgat gtgaaatttcctatacgatt agaagcgctggttttgaaac attatcaattttgcaggtaa mqtbp1 tcgtgattttaaaattcaga atatggtcggtagtgtcgat gtgaaatttccaatacggtt agaagcgttggttttgaaac attatcaattttgcaggta- prtbp1 tcgtgattttaaaattcaga atatggtcggtagtgtcgat gtgaaatttccaatacggtt agaagcgttggttttgaaac attatcaattttgcaggta- hctbp1 tcgagattttaaaattcaaa atatggtaggaagtgttgat gtgaaatttcctattcgatt agaagcacttgtcttaaaac attatcaattttgcaggt-- hctbp2 tcttgattttaaaattcaaa atatggttggtagtgcagat gttagttttaaaattcaact tgaagcacttgcattgaaac atgcaacgtattgcaggt-- bptbp catggacttcaaaattcaga acattgtgggcagcattgat gtgggcttttgtctgcgcct cgagtgctttcacacttgtc actcgcagttcagcag---- mqtbp2 aacaaacaaacgaactaatc gaatatcggctcgatacgct ttttcatcgttcttggattt tagtt prtbp2 aacaaacaaacaaactaatc gaatatcgactcgatacgct ttttcatcgttcttggattt tagtt mqtbp1 ---aaacaaacgaactaatc gaatatcgaatcgatacgct tttacgtcgtccttggtttt tagtt prtbp1 ---aaacaaacgaactaatc gaatatcggatcgatacgct tttgcgtcgtccttggtttt tagtt hctbp1 -------------------t tgaataattaacaaaagatt tatttttttctttgaaattt tagtt hctbp2 -------------------t agagaagtttattttgttta ttaaatcttggattttattt cagtt bptbp -------------------- -------------------- -------------------- ----c ; end; [adjust to exclude intron positions] [begin paup; exclude 223-292; [intron 1] exclude 397-464 ; [intron 2] end;]