Schaup, H.W., M.L. Sogin, C.G. Kurland and C.R. Woese: Localization of a Binding Site for Ribosomal Protein S8 Within the 16S Ribosomal Ribonucleic Acid of Escherichia coli, J. Bacteriol, 115:82 (1973).

Sogin, M.L., C.R. Woese, B. Pace and N.R. Pace: The Relationship between Precursor and Mature Forms of the 23S Ribosomal RNA, J. Mol. Evol, 2:167-174 (1973).

Dobson, P.R., W.F. Doolittle and M.L. Sogin: Precursor of 5S Ribosomal Ribonucleic Acid in the Blue-Green Alga Anacystis nidulans, J. Bacteriol, 117:660-666 (1974).

Pace, N.R. and M.L. Sogin: In Vitro Maturation of Precursors of 5S Ribosomal RNA From Bacillus subtilis, Brookhaven Symposium in Biology, 26:224-239 (1974).

Pribula, C.D., G.E. Fox, C.R. Woese, M.L. Sogin and N.R. Pace: Nucleotide Sequence of Bacillus megaterium 5S RNA, FEBS Letters, 44:322-323 (1974).

Sogin, M.L. and N.R. Pace: In vitro maturation of precursors of 5S ribosomal RNA from Bacillus subtilis, Nature, 252:598-600 (1974).

Woese, C.R., M.L. Sogin and L. Sutton: Procaryote Phylogeny I: Concerning the Relatedness of Aerobacter aerogenes to Escherichia coli, J. Mol. Evol, 3:293-299 (1974).

Doolittle, W.F, C.R. Woese, M.L. Sogin, L. Bonen and D. Stahl: Sequence studies on 16S Ribosomal RNA from a Blue-Green Alga, J. Mol. Evol, 4:307-315 (1975).

Marotta, C., S.M. Weissman, M.L. Sogin and N.R. Pace: The primary structure of Bacillus stearothermophilus and Bacillus subtilis 5S RNAs, J. Biol. Chem, 251:3122 (1976).

Sogin, M.L., N.R. Pace, M. Rosenberg and S.M. Weissman: Nucleotide sequence of a 5S ribosomal RNA precursor from Bacillus subtilis, J. Biol. Chemistry, 251:3480 (1976).

Woese, C.R., M.L. Sogin, D. Stahl, B.J. Lewis and L. Bonen: A comparison of the 16S ribosomal RNA from mesophilic and thermophilic Bacilli: Some modifications in the Sanger Method for RNA sequencing, J. Mol. Evol, 7:97 (1976).

Schroeder, E., J. McKibbin, M.L. Sogin and N.R. Pace: The mode of degradation of precursor-specific RNA fragments by Bacillus subtilis, J. Bacteriol, 130:1000 (1977).

Sogin, M.L., B. Pace and N.R. Pace: Partial purification and properties of a ribosomal RNA maturation nuclease from Bacillus subtilis, J. Biol. Chemistry, 252:1350 (1977).

Pace, N.R., B. Meyhack, B. Pace and M.L. Sogin: The Interaction of RNase M5 with a 5S rRNA Precursor, in Transfer RNA: Biological Aspects, ed. Abelson, J., P. Schimmel and D. Soll, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, (1980).

Sogin, M.L. and G.J. Olsen: Identification and mapping of a 60 bp EcoRI fragment in the Dictyostelium discoideum ribosomal DNA, Gene, 8:231 (1980).

Peffley, D.M. and M.L. Sogin: A Putative tRNATrp Gene Cloned from Dictyostelium discoideum: Its Nucleotide Sequence and Association with Repetitive Deoxyribonucleic Acid, Biochemistry, 20:4015-4021 (1981).

Olsen, G.J. and M.L. Sogin: Nucleotide Sequence of Dictyostelium discoideum 5.8S Ribosomal Ribonucleic Acid: Evolutionary and Secondary Structural Implications, Biochemistry, 21:2335-2343 (1982).

McCarroll, R., G.J. Olsen, Y.D. Stahl, C.R. Woese and M.L. Sogin: Nucleotide Sequence of the Dictyostelium discoideum Small-Subunit Ribosomal Ribonucleic Acid Inferred from the Gene Sequence: Evolutionary Implications, Biochemistry, 22:5858-5868 (1983).

Olsen, G.J., R. McCarroll and M.L. Sogin: Secondary Structure of the Dictyostelium discoideum small subunit ribosomal RNA, Nucleic Acids Res, 11:8037-8049 (1983).

Pace, N.R., K. Gardiner, B. Meyhack, B. Pace, M.L. Sogin and D.A. Stahl: RNA Processing in Bacillus subtilis, (1983).

Elwood, H.J., G.J. Olsen and M.L. Sogin: The Small-Subunit Ribosomal RNA Gene Sequences from the Hypotrichous Ciliates Oxytricha nova and Stylonychia pustulata, Mol. Biol. and Evol., 2:399-410 (1985).

Lane, D.J., B. Pace, G.J. Olsen, D.A. Stahl, M.L. Sogin and N.R. Pace: Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses, Proc. Natl. Acad. Sci., 82:6955-6959 (1985).

Dingerman, T., W. Bertling, T. Brechner, K. Nerke, D.M. Peffley and M.L. Sogin: Structure of two tRNA genes from Dictyostelium discoideum, Nucl. Acids Res, 14:1127 (1986).

Gunderson, J.H. and M.L. Sogin: Length variation in eukaryotic rRNAs: Small subunit rRNAs from the protists Acanthamoeba castellanii and Euglena gracilis, Gene, 44:63-70 (1986).

Gunderson, J.H., T.F. McCutchan and M.L. Sogin: Sequence of the Small Subunit Ribosomal RNA Gene Expressed in the Bloodstream Stages of Plasmodium berghei: Evolutionary Implications, J. Protozool., 33:525-529 (1986).

Sogin, M.L. and H.J. Elwood: Primary Structure of the Paramecium tetraurelia Small-Subunit rRNA Coding Region: Phylogenetic Relationships Within the Ciliophora, J. Mol. Evol, 23:53-60 (1986).

Sogin, M.L., A. Ingold, M. Karlok, H. Nielsen and J. Engberg: Phylogenetic evidence for the acquisition of ribosomal RNA introns subsequent to the divergence of some of the major Tetrahymena groups, EMBO J, 5:3625-3630 (1986).

Sogin, M.L., H.J. Elwood and J.H. Gunderson: Evolutionary diversity of eukaryotic small subunit rRNA genes, Proc. Natl. Acad. Sci, 83:1383-1387 (1986).

Sogin, M.L., K. Miotto and L. Miller: Primary structure of the Neurospora crassa small subunit ribosomal RNA coding region, Nucleic Acids Res, 14:9540 (1986).

Sogin, M.L., M.T. Swanton, J.H. Gunderson and H.J. Elwood: Sequence of the Small Subunit Ribosomal RNA Gene from the Hypotrichous Ciliate Euplotes aediculatus, J. Protoozool, 33:26-29 (1986).

Gunderson, J.H., H.J. Elwood, A. Ingold, K. Kindle and M.L. Sogin: Phylogenetic relationships between chlorophytes, chrysophytes and oomycetes, Proc. Natl. Acad. Sci., 84:5823-5827 (1987).

Gunderson, J.H., M.L. Sogin, G. Wollett, M. Hollingdale, V.F. De La Cruz, A.P. Waters, and T.F. McCutchan: Structurally Distinct, Stage Specific Ribosomes Occur in Plasmodium, Science, 238:933-937 (1987).

Lau, P.P., B. Degrunner-Vossbrinck, B. Dunn, K. Miotto, M.T. MacDonell, D.M. Rollins, C.J. Pillidge, R.B. Hespell, R.R. Colwell, M.L. Sogin, and G.E. Fox: Phylogenetic Diversity and Position of the Genus Campylobacter, System Appl. Microbiol, 9:231-238 (1987).

Sogin, M.L., and J.H. Gunderson: Structural diversity of Eukaryotic Small Subunit Ribosomal RNAs: Evolutionary Implications, Ann. N.Y. Acad. Sci., 503:125-139 (1987).

Edman, J.C., J.A. Kovacs, H. Masur, D.V. Santi, H.J. Elwood, and M.L. Sogin: Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the Fungi, Nature, 334:519-522 (1988).

Looker, D., L.A. Miller, H.J. Elwood, S. Stickel and M.L. Sogin: Primary structure of the Leishmania donovani small subunit ribosomal RNA coding region, Nucleic Acids Res, 16:7198 (1988).

Lynn, D.H. and M.L. Sogin: Assessment of phylogenetic relationships among ciliated protists using partial ribosomal RNA sequences derived from reverse transcripts, BioSystems, 21:249-254 (1988).

McCutchan, T.F., V.F. de la Cruz, A.A. Lal, J.H. Gunderson, H.J. Elwood and M.L. Sogin: Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum, Mol. and Biochem. Parasito., 28:63-68 (1988).

Medlin, L., H.J. Elwood, S. Stickel and M.L. Sogin: The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding regions, Gene, 71:491-499 (1988).

Cummings, D.J., J. Domenico, J. Nelson and M.L. Sogin: DNA Sequence, Structure and Phylogenetic Relationship of the Small Subunit rRNA coding Region of Mitochondrial DNA from Podospora anserine, J. Mol. Evol., 28:232-241 (1989).

Edman, J.C., J.A. Kovacs, H. Masur, D.V. Santi, H.J. Elwood and M.L. Sogin: Ribosomal RNA Genes of Pneumocystis carinii, J. Protozool., 36:18S-20S (1989).

Huss, V.A.R. and M.L. Sogin: Primary structure of the Chlorella vulgaris small subunit ribosomal RNA coding region, Nucleic Acids Res, 17:1255 (1989).

Sogin, M.L: Evolution of Eukaryotic Microorganisms and their Small Subunit Ribosomal RNAs, Amer. Zool., 29:487-499 (1989).

Sogin, M.L. and J.C. Edman: A self-splicing intron in the small subunit rRNA gene of Pneumocystis carinii, Nucleic Acids Res, 17:5349-5359 (1989).

Sogin, M.L., J.H. Gunderson, H.J. Elwood, R.A. Alonso and D.A. Peattie: Phylogenetic Meaning of the Kingdom Concept: An Unusual Ribosomal RNA from Giardia lamblia., Science, 243:75-77 (1989).

Sogin, M.L., U. Edman and H.J. Elwood: A single kingdom of eukaryotes, in The Hierarchy of Life, ed. B.Fernholm, K. Bremer, H. Jornvall, Elsevier Science Publisher, Amsterdam, 133-143 (1989).

Bhattacharya, D., H.J. Elwood, L.J., Goff and M.L. Sogin: The Phylogeny of Gracilaria lemaneiformis (Rhodophyta) Based on Sequence Analysis of its Small Subunit Ribosomal RNA Coding Region, J. Phycol., 26:181-186 (1990).

Forster, H., H.J. Elwood, M.D. Coffey and M.L. Sogin: Sequence Analysis of the Small Subunit Ribosomal RNAs of Three Zoosporic Fungi And Implications For Fungal Evolution, Mycologia, 82:306-312 (1990).

Huss, V.A.R., and M.L. Sogin: Phylogenetic Position of Some Chlorella Species within the Chlorococcales based upon Complete Small-Subunit Ribosomal RNA Sequences, J. Mol. Evol., 31:432-442 (1990).

Sogin, M.L.: Amplification of Ribosomal RNA Genes for Molecular Evolution Studies, in PCR Protocols: A Guide to Methods and Applications, ed. M. Innis, D. Gelfland, J. Sninsky and T. White, Elsevier Scientific, Amsterdam, 307 (1990). Link >>

Wit, D.D., L. Steyn, S. Shoemaker and M.L. Sogin: Direct Detection of Mycobacterium tuberculosis in Clinical Specimens, J. Clin. Microbiol., 28:2437-2441 (1990).

Ariztia, E.V., R.A. Andersen and M.L. Sogin: A New Phylogeny for Chromophyte Algae Using 16S-like RRNA Sequences from Mallomonas papillosa (Synurophyceae) and Tribonema aequale (Xanthophyceae, J. Phycol., 27:428-436 (1991).

Barns, S.M., D.J. Lane, M.L. Sogin, C. Bibeau and W.G. Weisburg: Evolutionary Relationships among Pathogenic Candida Species and Relatives, J. Bact, 173:2250-2255 (1991).

Bhattacharya, D., S.K. Stickel and M.L. Sogin: Molecular Phylogenetic Analysis of Actin Genic Regions from Achlya bisexualis (Oomycota) and Costaria costata (Chromophyta, J. Mol. Evol, 33:4275-4286 (1991).

Davila-Aponte, JA., VAR. Huss, M.L. Sogin and T.R. Cech: A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus, Nucl. Acids. Res, 19:4429-4436 (1991).

Gajadhar, A.A., W.C. Marquardt, R. Hall, J. Gunderson, E.V.A. Carmona and M.L. Sogin: Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata, and Crypthecodinium cohnii.reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates, Molecular and Biochemical Parasitology, 45:147-154 (1991).

Greenwood, S.J., M. Schlegel, M.L. Sogin and D.H. Lynn: Phylogenetic Relationships of Blepharisma americanum and Colpoda inflata Within the Phylum Ciliophora Inferred from Complete Small Subnit rRNA Gene Sequences, J. Protoozool., 38:1-6 (1991).

Greenwood, S.J., M.L. Sogin and D.H. Lynn: Phylogenetic Relationships within the Class Oligohymenophorea, Phylum Ciliophora Inferred from the Complete Small Subunit rRNA Gene Sequences of Colpidium campylum, Glaucoma Chattoni and Opisthonecta henneguyi, J. Mol. Evol., 33:163-174 (1991).

Illingworth, C.A., J.H. Andrews, C. Bibeau and M.L. Sogin: Phylogenetic Placement of Athelia bombacina, Aureobasidium pullulans and Colletotrichum gloeosporioides Inferred from Sequence Comparisons of Small Subunit Ribosomal RNAs, Experimental Mycology, 15:65-75 (1991).

Medlin, L.K., H.J. Elwood, S. Stickel and M.L. Sogin: Morphological and Genetic Variation within the Diatom Skeletonema costatum (Bacillariophyta): Evidence for a New Species, Skeletonema pseudocostatum, J. Phycol., 27:514-524 (1991).

Schlegel, M., H.J. Elwood and M.L. Sogin: Molecular Evolution in Hypotrichous Ciliates: Sequence of the Small Subunit Ribosomal RNA Genes from Onychodromus quadricornutus and Oxytricha granulifera, J. Mol. Evol., 32:64-69 (1991).

Sogin, M.L.: Early Evolution and the Origin of Eukaryotes, Current Opinion in Genetics and Development, 1:457-463 (1991).

Sogin, M.L.: The Phylogenetic Significance of Sequence Diversity and Length Variations in Eukaryotic Small Subunit Ribosomal RNA Coding Regions, in New Perspectives on Evolution, ed. Warren L, Koprowski, H., Wiley Liss, New York, NY, 175-188 (1991).

Bhattacharya, D., Medlin, L., Wainright, P.O., Ariztia, E.V., Bibeau C., Stickel, S.K. and Sogin, M.L: Algae Containing Chlorophyll a+c are Paraphyletic: Molecular Evolutionary Analysis of the Chromophyta, Evolution, 46:1801-1817 (1992).

Burns, T.D., Vilgalys, R., Barns, S.M., Gonzalez, D., Hibbett, D.S., Lane, D.J., Simon, L., Stickel, S., Szaro, T.M., Weisburg, W.G. and Sogin, M.L: Evolutionary relationships within the Fungi: analyses of nuclear small subunit rRNA sequences, Molecular Phylogenetics and Evolution, 1:231-241 (1992).

Patterson, D.J. and Sogin, M.L.: Eukaryote origins and protistan diversity, in The Origin and Evolution of Prokaryotic and Eukaryotic Cells, ed. H. Hartman and K. Matsuno, World Scientific Pub, New Jersey, 13-46 (1992).

Bhattacharya, D., Stickel, S. and Sogin M.L: Isolation and Molecular Phylogenetic Analysis of Actin Coding Regions from Emiliania huxleyi, a Prymnesiophyte Alga, using Reverse Transcriptase and PCR Methods, Mol. Biol. Evol, 10:689-703 (1993).

Fong, D., Rodriguez, K.K., Sun, J., Sogin, M.L., Bushek, D., Littlewood, D.T.J. and Ford, S.E: Small subunit ribosomal RNA gene sequence of the oyster parasite Perkinsus marinus, Molecular Marine Biology and Biotechnology, 2:346-350 (1993).

Gagnon, S., R. C. Levesque, M. L. Sogin, and A. A. Gajadhar: Molecular Cloning, Complete Sequence of the Small subunit Ribosomal RNA Coding Region and Phylogeny of Toxoplasma gondii, Molecular and Biochemical Parasitology, 60:145-148 (1993).

Hinkle, G. and M.L. Sogin: The Evolution of the Vahlkampfiidae as Deduced from 16S-like Ribosomal RNA Analysis, J. Eukaryotic Micro., 40:599-603 (1993).

Leipe, D.D., Gunderson, J.H., Nerad, T.A., and Sogin, M.L: Small subunit Ribosomal RNA of Hexamita inflata and the quest for the first branch in the eukaryotic tree, Molecular and Biochemical Parasitology, 59:41-48 (1993).

Scholin, C.A., D. M. Anderson and M.L. Sogin: The Existence of Two Distinct Small-Subunit rRNA Genes in the North American Toxic Dinoflagellate Alexandrium fundyense(Dinophyceae), J. Phycology, 29:209-216 (1993).

Sogin, M.L: Microbiology - Giants Among the Prokaryotes, Nature, 362:207 (1993).

Sogin, M.L.: Molecular Biology and Protoctist Phylogeny, in Illustrated Glossary of Protoctista, ed. L. Margulis, H. McKhann and L. Olendzenski, Jones and Bartlett Publishers, Boston, xlv-xlvii (1993).

Sogin, M.L., Hinkle, G. and Leipe, D.D.: Universal Tree of Life, Nature, 362:795 (1993).

Wainright, P.O., Hinkle, G., Sogin, M.L. and Stickel, S.K: The Monophyletic Origins of the Metazoa; An unexpected evolutionary link with Fungi, Science, 260:340-243 (1993).

Bennett, M.V.L., Zheng, X., and Sogin, M.L: The Connexins and Their Family Tree, in Molecular Evolution of Physiological Processes". 47th Symposium Society of General Physiologists, ed. D.M. Fambrough, The Rockefeller University Press, 223-233 (1994).

Edman JC, Sogin ML.: Molecular phylogeny of Pneumocystis carinii, in Pneumocystis carinii Pneumonia, ed. Walzer PD, Marcel Dekker, Inc., New York, NY, 91-105 (1994).

Gunderson, J.H., Goss, S.J. and Sogin, M.L.: The Sequence of the Hartmanella vermiformis Small Subunit rRNA Coding Region, J. Euk. Microbiol., 41:481-482 (1994).

Hinkle, G., Leipe, D.D., Nerad, T.A., and Sogin, M.L.: The Unusually Long Small Subunit Ribosomal RNA of Phreatamoeba balamuthi, Nucleic Acids Res., 22:465-469 (1994).

Hinkle, G., Wetterer, J.K., Schultz, T. and Sogin, M.L.: Phylogeny of the Attine Ant Fungi Based on Analysis of Small Subunit Ribosomal RNA Gene Sequences, Science, 266:1695-1697 (1994).

Leipe, D.D., Bernhard, D., Schlegel, M. and Sogin, M.L.: Evolution of 16S-like ribosomal RNA genes in the ciliophoran taxa Litostomatea and Phyllopharyngea, European Journal of Protistology, 30:354-361 (1994).

Leipe, D.D., Wainright, P.O., Gunderson, J.H., Porter, D., Patterson, D.J.,Valois, F., Himmerich, S. and Sogin, M.L: The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis, Phycologia, 33:369-377 (1994).

Scholin, C.A., M. Herzog, M.L. Sogin and D.M. Anderson: Identification of group and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae) II. Sequence analysis of a fragement of the LSU rRNA gene, J. Phycology, 30:999-1011 (1994).

Sogin, M.L.: The Origin of Eukaryotes and Evolution into Major Kingdoms, in Early Life on Earth. Nobel Symposium No.84, ed. S. Bengtson, Columbia University Press, New York, NY, 181-192 (1994).

Wainright, P.O., Patterson, D.J., and Sogin, M.L.: Monophyletic Origin of Animals: A Shared Ancestry with the Fungi, in Molecular Evolution of Physiological Processes". 47th Symposium Society of General Physiologists, ed. D.M. Fambrough, The Rockefeller University Press, 39-54 (1994).

Bernhard, D., Leipe, D. Sogin, M.L. and Schlegel, M.: Phylogenetic relationships of the Nassulida within the phylum Ciliophora inferred from the complete small subunit rRNA gene sequences of Furgasonia blochmanni, Obertrumia georgiana, and Pseudomicrothorax dubius, J. Euk. Microbiol., 42:126-131 (1995).

Gunderson, J., Hinkle, G., Leipe, D., Morrison, H.G., Stickel, S.K., Odelson, D.A., Breznak, J.A., Nerad, T.A., Muller, M., and Sogin, M.L: Phylogeny of Trichomonads Inferred from Small-Subunit rRNA Sequences, J. Euk. Microbiol., 42:411-415 (1995).

Kerk, D., Gee, A., Wainright, P.O., Drum, A.S., Elston, R.A. and Sogin, M.L: The Rosette Agent of Chinook Salmon (Oncorhyhnchus tshawytscha) is Closely Related to Choanoflagellates, as Determined by the Phylogenetic Analyses of its Small Ribosomal Subunit RNA, Marine Biology, 122:187-192 (1995).

Morrison, H.G., Oleksiak, M.F., Sogin, M.L. and Stegeman, J.J.: Identification of Cytochrome P450 1A Genes from two Teleost fish, Toadfish (Opsanus tau) and Scup (Stenotomus chrysops), and Phylogenetic Analysis of CYP1A Genes, Biochem. J., 308:97-104 (1995).

Bahr, M., J.E. Hobbie and M.L. Sogin: Bacterial diversity in an arctic lake: a freshwater SAR11 cluster, Aquatic Microbial Ecology, 11:271-277 (1996).

Hammerschmidt, B., M. Schlegel, D.H. Lynn, D.D. Leipe, M.L. Sogin and I.B. Raikov: Insights into the Evolution of Nuclear Dualism in the Ciliates Revealed by Phylogenetic Analysis of rRNA Sequence, J. Euk. Microbiol., 3:225-230 (1996).

Leipe, D., S.B. Tong, C.L. Goggin, S.B. Slemenda, N.J. Pieniazek and M.L. Sogin: 16S-like rDNA sequences from Developayella elegans, Labyrinthuloides haliotidis and Proteromonas lacertae confirm that the stramenopiles are a primarily heterotrophic group, Europ. J. Protistology, 32:449-458 (1996).

Relman, D.A., T.M. Schmidt, A. Gajadhar, M.L. Sogin, J.Cross, K. Yoder, O Sethabutr and P. Echeverria: Molecular phylogenetic analysis of Cyclospora, the human intestinal pathogen, suggests that it is closely related to Eimeria species, Journal of Infectious Diseases, 173:440-445 (1996).

Santamaria-Fries, M., Fajardo, L.F., Sogin, M.L., Olson, P.D. and Relman, D.A.: Lethal infection by a previously-unrecognised metazoan parasite, Lancet, 347:1797-1801 (1996).

Schlegel, M., J. Lom, A. Stechmann, D. Bernhard, D. Leipe, I. Dykova and M.L. Sogin: Phylogenetic Analysis of Complete Small Subunit Ribosomal RNA Coding Region of Myxidium lieberkuehni: Evidence that Myxozoa are Metazoa and Related to the Bilateria, Arch. Protistenkd, 147:1-9 (1996).

Silberman, J.D., C. G. Clark and M.L. Sogin: Dientamoeba fragilis shares a recent common evolutionary history with the Trichomonads; Evidence from 16s-like rRNA sequence comparisons, Mol. Biochem. Parasitol., 76:311-314 (1996).

Silberman, J.D., M.L. Sogin, D.D. Leipe, C.G. Clark: Blastocystis hominis: a human parasite finds a taxonomic home, Nature, 380:398 (1996).

Sogin, M., J. Silberman, G. Hinkle, and H. Morrison: Problems with molecular diversity in the Eukarya, in Society of General Microbiology Symposium: Evolution of microbial Life, ed. Roberts, D.M., Sharp, P., Alderson, G. & Collins, M.A., Cambridge University Press, Cambridge, 167-184 (1996).

Sogin, M.L. and Hinkle, G.: Common Measures for Studies of Biodiversity: Molecular phylogeny in the eukaryotic microbial world, in Biodiversity II: Understanding and Protecting Our Biological Resources, ed. M.L. Reaka-Kudla, D.E. Wilson, and E.O. Wilson, Joseph Henry Press, Washington, DC, 109-122 (1996). Link >>

Sogin, M.L., H.G. Morrison, G. Hinkle and J.D. Silberman: Ancestral Relationships of the Major Eukaryotic Lineages, Microbiologia SEM, 12:17-28 (1996).

Sogin, M.L., Silberman, J.D., Hinkle, G. and Morrison, H. G.: Problems with Molecular Diversity in the Eukarya, in Society for General Microbiology Symposium 54: Evolution of Microbial Life, ed. D. McL. Roberts, P. Sharp, G. Alderson and M.A. Collins, Cambridge University Press, Cambridge, MA, 167-184 (1996).

Amaral Zettler, L., M.L. Sogin and D.A. Caron: Phylogenetic relationships between the Acantharea and the Polycystinea: A molecular perspective on Haeckel’s Radiolaria, Proc. Natl. Acad. Sci., 94:11411-11416 (1997).

Hinkle, G., H.G. Morrison and M.L. Sogin: Genes coding for reverse transcriptase, DNA-directed RNA polymerase and chitin synthase from the microsporidian Spraguea lophii, Biol. Bull, 193:250-251 (1997).

Sogin, M.L.: History assignment: when was the mitochondrion founded?, Current Opinions in Genetics & Development, 7:792-799 (1997).

Sogin, M.L.: Organelle origins: Energy-producing symbionts in early eukaryotes?, Current Biology, 7:R315-R317 (1997).

Zhou, Q., G. Hinkle, M. L. Sogin, and V. E. Dionne: Phylogenetic Analysis of Olfactory Receptor Genes from Mudpuppy (Necturus maculosus, Biol. Bull, 193:248-250 (1997).

Clark, C.G., J.D. Silberman, L.S. Diamond and M.L. Sogin: Molecular systematics of the intestinal amoebae, in Evolutionary Relationships Among Protozoa, ed. G. H. Coombs, K. Vickerman, M. A. Sleigh and A. Warren, Chapman & Hall, 169-180 (1998).

Edgcomb, V., E. Viscogliosi, A.G.B. Simpson, P. Delgado-Viscogliosi, A.J. Roger, and M.L. Sogin: New Insights Into the Phylogeny of Trichomonads Inferred From Small Subunit rRNA Sequences, Protist, 149:359-366 (1998).

Henze, K., H.G. Morrison, M.L. Sogin, and M. Müller: Sequence and phylogenetic position of a class II aldolase gene in the amitochondriate protist, Giardia lamblia, Gene, 222:163-168 (1998).

Morrison, H.G., E.J. Weil, S.I. Karchner, M.L. Sogin, and J.J. Stegeman: Molecular Cloning of CYP1A from the Estuarine Fish Fundulus heteroclitus and Phylogenetic Analysis of CYP1 Genes: Update With New Sequences, Comp. Biochem. Physiol. Part C, 121:231-240 (1998).

Roger, A.J., S.G. Svard, J. Tovar, C. Graham Clark, M.W. Smith, F.D. Gillin and M.L. Sogin: A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria, Proc. Natl. Acad. Sci., 95:229-234 (1998).

Smith, M.W., S.B. Aley, M.L. Sogin, F.D. Gillin and G.A. Evans: Sequence survey of the Giardia lamblia genome, Molecular and Biochemical Parasitology, 95:267-280 (1998).

Sogin, M.L. and J.D. Silberman: Evolution of the Protists and Protistan Parasites from the perspective of molecular systematics, International Journal of Parasitology, 28:11-20 (1998).

Orgel, L., M.A. Hearn, J. Bada, J. Baross, C. Chapman, M. Drake, J. Kerridge, M. Race, M. Sogin, S. Squyres: Sample return from small solar system bodies, Adv. Space Res., 25:239-248 (1999).

Roger, A.J., H.G. Morrison, and M.L. Sogin: Primary structure and phylogenetic relationships of a malate dehydrogenase gene from Giardia lamblia, Journal of Molecular Evolution, 48:750-755 (1999).

Sanchez, L.B., H.G. Morrison, M.L. Sogin and M. Muller: Cloning and sequencing of a putative acetyl-CoA synthetase (ADP-forming) gene from the amitochondriate protist, Giardia lamblia, Gene, 233:225-231 (1999).

Silberman, J.D., C.R. Clark, L.S. Diamond and M. L. Sogin: Phylogeny of the genera Entamoeba and Endolimax as deduced from small subunit ribosomal RNA sequences, Mole. Biol. Evol, 16:1740-1751 (1999).

Sogin, M.L: Evolution: A molecular point of view (introductory and concluding remarks, Biol. Bull, 196:415-416 (1999).

Teske, A., M.L. Sogin, L.P. Nielsen and H.W. Jannasch: Phylogenetic Relationships of a Large Marine Beggiatoa, System. Appl. Microbiol., 22:39-44 (1999).

Zaman, V., M. Zaki, J. Howe, M. Ng, D.D. Leipe, M.L. Sogin, and J.D. Silberman: Hyperamoeba isolated from Human Feces: Description and Phylogenetic Affinity, Europ. J. Protistol., 35:197-207 (1999).

Amaral Zettler, L.A., O.R. Anderson, T.A. Nerad and M.L. Sogin: The phylogenetic position of Comandonia operculata and its implications for the taxonomy of the genus Acanthamoeba, in IXth International Meeting on the Biology and Pathogenicity of Free-Living Amoebae Proceedings, ed. S. Billot-Bonef, P.A. Cabanes, F. Marciano-Cabral, P. Pernin, E. Pringuez, John Libbey Eurotext, Paris, France, 235-242 (2000).

Amaral Zettler, L.A., T.A. Nerad, C.J. O’Kelly, M.T. Peglar, P.M. Gillevet, J.D. Silberman, and M.L. Sogin: A molecular reassessment of the Leptomyxid amoebae, Protist, 151:275-282 (2000).

Bouzat, J.L., L.K. McNeil, H.M. Robertson, L.F. Solter, J. Nixon, J.E. Beever, H.R. Gaskins, G. Olsen, S. Subramaniam, M.L. Sogin, and H.A. Lewin: Phylogenomic analysis of the proteasome gene family from early-diverging eukaryotes, Journal of Molecular Evolution, 51:532-543 (2000).

Delgado-Viscogliosi, P., E.Viscogliosi, D. Gerbod, J. Kulda, M.L. Sogin and V.P. Edgcomb: Molecular phylogeny of Parabasalids based on small subunit rRNA Sequences, with Emphasis on the Trichomonadinae Subfamily, J. Euk. Microbiol., 471:70-75 (2000).

McArthur, A.G., H.G. Morrison, J.E.J. Nixon, N.Q.E. Passamaneck, U. Kim, G. Hinkle, M.K. Crocker, M.E. Holder, R. Farr, C.I. Reich, G.J. Olsen, S.B. Aley, R. Adam, F.D. Gillin, and M.L. Sogin: The Giardia genome project database, FEMS Microbiology Letters, 189:271-273 (2000).

Sogin, M.L.: Evolution of Eukaryotic Ribosomal RNA Genes, in McGraw-Hill Yearbook of Science and Technology, ed. S. Parker, McGraw-Hill, New York, NY, 260-262 (2000).

Wu, G., A.G. McArthur, A. Fiser, A.Sali, M.L. Sogin and M. Muller: Core Histones of the Amitochondria Protist, Giardia lamblia, Mol. Biol. Evol, 17:1156-1163 (2000).

Amaral Zettler, L.A., T.A. Nerad, C.J. O’Kelly and M.L. Sogin: The nucleariid amoebae: More protists at the animal-fungal boundary, J. Euk. Microbiol, 48:293-297 (2001).

Barbieri, E., B.J. Paster, D. Hughes, L. Zurek, D.P Moser, A. Teske and M.L. Sogin: Phylogenetic Characterization of Epibiotic Bacteria in the Accessory Nidamental Gland and in the Egg Capsules of the Squid Loligo Pealei Cephalopoda: Loliginidae, Environmental Microbiology, 3:151-167 (2001).

Edgcomb, V.P., A. Roger, A.G.B. Simpson, D. Kysela, and M.L. Sogin: Evolutionary Relationships Among "Jakobid" Flagellates as Indicated by Alpha- and Beta-Tubulin Phylogenies, Mol. Biol. Evol, 18:514-522 (2001).

Gerbod, D., V.P. Edgcomb, C. Noel, L. Zenner, R. Wintjens, P. Delgado-Viscogliosi, M.E. Holder, M.L. Sogin and E. Viscogliosi: Phylogenetic Position of the Trichomonad Parasite of Turkeys, Histomonas meleagridis (Smith) Tyzzer, Inferred from Small Subunit rRNA Sequence, J. Euk. Microbiol., 48:498-504 (2001).

Gerbod, D., V.P. Edgcomb, C. Noël, S. Vanacova, R. Wintjens, J. Tachezy, M.L. Sogin and E. Viscogliosi: Phylogenetic relationships of Class II fumarase genes from Trichomonad species, Mol. Biol. Evol, 18:1574-1584 (2001).

Karpov, S.A., M.L. Sogin and J.D. Silberman: Rootlet homology, taxonomy, and phylogeny of bicosoecids based on 18S rRNA gene sequences, Protistology, 21:34-47 (2001).

McArthur, A.G., L.A. Knodler, J.D. Silberman, B.J. Davids, F.D. Gillin, and M.L. Sogin: The evolutionary origins of eukaryotic protein disulfide isomerase domains: New evidence from the amitochondriate protist Giardia lamblia, Mol. Biol. Evol, 18:1455-1463 (2001).

Medina, M., A. Collins, J.D. Silberman, and M.L. Sogin: Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA, PNAS, 9817:9707-9712 (2001).

Morrison, H.G., A.J. Roger, T.G. Nystul, F.D. Gillin, and M.L. Sogin: Giardia lamblia expresses a proteobacterial-like DnaK homolog, Mol. Biol. Evol, 18:530-541 (2001).

Podar, M., S.H.D. Haddock, M.L. Sogin, and G. R. Harbison: A Molecular Phylogenetic Framework for the Phylum Ctenophora Using 18S rRNA Genes, Molecular Phylogenetics and Evolution, 21:218-230 (2001).

Walker, G., A.G.B. Simpson, V.P. Edgcomb, M.L. Sogin, and D.J. Patterson: Ultrastructural identities of Mastigamoeba punctachora, Mastigamoeba simplex, and Mastigella commutans and assessment of hypotheses of relatedness of the pelobionts Protista, Europ. J. Protistol., 37:25-49 (2001).

Amaral Zettler, L.A., F. Gomez, E. Zettler, B.G. Keenan, R. Amils and M.L. Sogin: Heavy-metal, acid-loving eukaryotes from Spain’s “River of Fire”, Nature, 417:137 (2002).

Edgcomb, V.P., A.G.B. Simpson, L. A. Amaral Zettler, T.A. Nerad, D. J. Patterson, M.E. Holder and M.L. Sogin: Pelobionts are Degenerate Protists: Insights from Molecules and Morphology, Mol. Biol. Evol, 19:978-982 (2002).

Edgcomb, V.P., D.T. Kysela, A. Teske, A. de Vera Gomez, and M.L. Sogin: Benthic eukaryotic diversity in a hydrothermal vent, Proc. Natl. Acad. Sci., 9911:7658-7662 (2002).

Gerbod, D., C. Noël, M. F. Dolan, V. P. Edgcomb, O. Kitade, S. Noda, F. Dufernez, M. Ohkuma, T. Kudo, M. Capron, M. L. Sogin, and E. Viscogliosi: Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Devescovinidae and Calonymphidae (Trichomonadea), Molecular Phylogenetics and Evolution, 25:545-556 (2002).

Langford, T.D., J.D. Silberman, M.E-L. Weiland, S.G. Svärd, J.M.McCaffery, M.L. Sogin and F.D. Gillin: Giardia lamblia: Identification and characterization of Rab and GDI proteins in a genome survey of the ER to Golgi endomembrane system, Experimental Parasitology, 101:13-24 (2002).

Morrison, H.G., G. Zamora, R.K. Campbell and M.L. Sogin: Inferring protein function from genomic sequence: Giardia lamblia expresses a phosphatidylinositol kinase-related kinase similar to yeast and mammalian TOR, Comparative Biochemistry and Physiology, Part B, 133:477-491 (2002).

Nixon, J.E.J., A. Wang, H.G. Morrison, A.G. McArthur, M.L. Sogin, B.J. Loftus and J. Samuelson: A spliceosomal intron in Giardia lamblia, PNAS, 99:3701-3705 (2002).

Nixon, J.E.J., A. Wang, J. Field, H.G. Morrison, A.G. McArthur, M.L. Sogin, B.J. Loftus and J. Samuelson: Evidence for Lateral Transfer of Genes Encoding Ferredoxins, Nitroreductases, NADH Oxidase, and Alcohol Dehydrogenase 3 from Anaerobic Prokaryotes to Giardia lamblia and Entamoeba histolytica, Eukaryotic Cell, 1:181-190 (2002).

Podar, M., L. Mullineaux, H-R Huang, P. S. Perlman and M.L. Sogin: Bacterial Group II Introns in a Deep-sea Hydrothermal Vent Environment, Applied and Environmental Microbiology, 6812:6392-6398 (2002).

Simpson, A.G.B., A.J. Roger, J.D. Silberman, D.D. Leipe, V.P. Edgcomb, L.S. Jermiin, D.J. Patterson and M.L. Sogin: Evolutionary history of early diverging eukaryotes: The excavate taxon Carpediemonas is a close relative of Giardia, Mol. Biol. Evol, 1910:1782-1791 (2002).

Teske, A., K-U. Hinrichs, V. Edgcomb, A. de Vera Gomez, D. Kysela, S.P. Sylva, M.L. Sogin & H.W. Jannasch: Microbial Diversity of Hydrothermal Sediments in the Guaymas Basin: Evidence for Anaerobic Methanotrophic Communities, Applied and Environmental Microbiology, 68:1994-2007 (2002).

Amaral Zettler, L.A., M.A. Messerli, A.D. Laatsch, P.J.S. Smith, and M. L. Sogin: From Genes to Genomes: Beyond biodiversity in Spain’s Rio Tinto, Biol. Bull., 204:205-209 (2003).

Dhillon, A., A. Teske, J. Dillon, D.A. Stahl and M.L. Sogin: Molecular Characterization of Sulfate Reducing Bacteria in the Guaymas Basin, Applied and Environmental Microbiology, 69:2765-2772 (2003).

Medina, M., A.G. Collins, J.W. Taylor, J. W. Valentine, J.H. Lipps, L. Amaral Zettler, & M. L. Sogin: Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa, International Journal of Astrobiology, 2:203-211 (2003).

Nixon, J.E.J., J. Field, A.G. McArthur, M.L. Sogin, N. Yarlett, B.J. Loftus, and J. Samuelson: Iron-Dependent Hydrogenases of Entamoeba histolytica and Giardia lamblia: Activity of the Recombinant Entamoebic Enzyme and Evidence for Lateral Gene Transfer, Biol. Bull., 204:1-9 (2003).

Noël, C., C. Peyronnet, D. Gerbod, V. P. Edgcomb, P. Delgado-Viscogliosi, M. L. Sogin, M. Capron, E. Viscogliosi, and L. Zenner: Phylogenetic analysis of Blastocystis isolates from different hosts based n the comparison of small-subunit rRNA gene sequences, Molecular & Biochemical Parasitology, 126:119-123 (2003).

O'Kelly, C. J., J. D. Silberman, L. A. Amaral Zettler, T. A. Nerad, & M. L. Sogin: Monopylocystis visvesvarai and Sawyeria marylandensis: Two New Amitochondrial Heterolobosean Amoebae from Anoxic Environments, Protist, 154:281-290 (2003).

Peglar, M.T., L.A. Amaral Zettler, O.R. Anderson, T.A. Nerad, P.M. Gillevet, T.E. Mullen, S. Frasca, Jr., J.D. Silberman, C.J. O’Kelly and M. Sogin: Two New Small-Subunit Ribosomal RNA Gene Lineages within the Subclass Gymnamoebia, J. Eukaryot. Microbiol., 50:224-232 (2003).

Seshadri, V., A.G. McArthur, M.L. Sogin, R.D. Adam: Giardia lamblia RNA polymerase II: Amanitin-Resistant Transcription, J. Biol. Chem., 278:27804-27810 (2003).

Sogin, M. and D. E. Jennings: Introduction, Biol. Bull., 204:159 (2003).

Teske, A., A. Dhillon and M. L. Sogin: Genomic markers of ancient anaerobic microbial pathways: Sulfate reduction, methanogenesis and methane oxidation, Biol. Bull., 204:186-191 (2003).

Walker, G., J.D. Silberman, S.A. Karpov, A. Preisfeld, P. Foster, A.Ol Frolov, Y. Novozhilov and M.L. Sogin: An ultrastructural and molecular study of Hyperamoeba dachnyaya,n. sp., and its relationship to the mycetozoan slime moulds, European Journal of Protistology, 39:319-336 (2003).

Best, A.A, H.G. Morrison, A.G. McArthur, M.L. Sogin & G.J. Olsen: Evolution of eukaryotic transcriptions: Insights from the genome of Giardia Lamblia, Genome Research, 14:1537-1547 (2004).

Crump, B., C.S. Hopkinson, M.L. Sogin, and J.E. Hobbie: Microbial Biogeography along an Estuarine Salinity Gradient: Combined Influences of Bacterial Growth and Residence Time, Applied and Environmental Microbiology, 70:1494-1505 (2004).

Kysela, D.T., C. Palacios and M.L. Sogin: Serial Analysis of V6-ribosomal sequence tags (SARST-V6): A method for efficient, high-throughput analysis of microbial community composition, Environmental Microbiology, In press (2004).

Noel , C., F. Dufernez, D. Gerbod, V. P. Edgcomb, P. Delgado-Viscogliosi, L. Ho, M. Singh, R. Wintjens, M.L. Sogin, M. Capron, R. Pierce, L. Zenner, and E. Viscogliosi: Molecular Phylogenies of Blastocystis Isolates from Different Hosts: Implications for Genetic Diversity, Speciation, and Zoonosis, J. Clin. Microbiol., In press (2004).

Bahr, M., B.C. Crump, V. Kelpac-Ceraj, A.P. Teske, M.L. Sogin, and J.E. Hobbie: Molecular characterization of sulfate-reducing bacteria in a New England salt marsh, Environmental Microbiology, 7:1175-1185 (2005).

Dhillon, A., S. Goswami, M. Riley, A. Teske, and M.L. Sogin: Domain Evolution and Functional Diversification of Sulfite Reductases, Astrobiology , 5(1):18-29 (2005).

Dhillon, A., Lever, M., Loyd, K., Albert, D.B., Sogin, M.L., Teske, A.: Methanogen Diversity Based on Molecular Characterization of Methyl Coenzyme M Reductase A (mcrA) Genes in Hydrothermal Sediments of the Guaymas Basin, Appl Env. Microbiology, 71: 4592-4601 (2005).

Messerli, M. A., Amaral Zettler, L. A., Zettler, E. Jung, S-K, Smith, P. J. S. & M. L. Sogin.: Life at acidic pH imposes an increased energetic cost for a Eukaryotic Acidophile. , Journal of Experimental Biology, 208(13):2569-2579 (2005).

Sogin, M.L., D.J. Patterson, & A.G. McArthur: Molecular and traditional approaches in the study of diversity and diversification of eukaryotes, in Planets & Life: The Emerging Science of Astrobiology, ed. J. Barros & W. Sullivan, Cambridge University Press, in press (2005).

Weiland, M.E-L., A.G. McArthur, H.G. Morrison, M.L. Sogin, & S.V. Svard: Annexin-like alpha giardins: a new cytoskeletal gene family in Giardia lamblia, International Journal for Parasitology, 35:617-626 (2005).

Bach, W., K.J. Edwards, J.M. Hayes, J.A. Huber, S.M. Sievert and M.L. Sogin. Energy in the Dark: Fuel for Life in the Deep Ocean and Beyond. Eos 87(7): 73, 78 (2006).

Biddle, J.F., J.S. Lipp, M.A. Lever, K.G. Lloyd, K.B. Sørensen, R. Anderson, H.F. Fredricks, M. Elvert, T.J. Kelly, D.P. Schrag, M.L. Sogin, J.E. Brenchley, A. Teske, C.H. House and K.-U. Hinrichs. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc. Natl. Acad. Sci. USA 103(10): 3846-3851 (2006).

Ley, R.E., J.K. Harris, J. Wilcox, J.R. Spear, S.R. Miller, B.M. Bebout, J.A. Maresca, D.A. Bryant, M.L. Sogin, and N.R. Pace. Unexpected diversity and complexity from the Guerrero Negro hypersaline microbial mat. Applied and Environmental Microbiology 72: 3685-3695 (2006).

Sogin, M.L., H.G. Morrison, J.A. Huber, D Mark Welch, S.M. Huse, P.R. Neal, J.M. Arrieta, and G.J. Herndl. (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc. Natl Acad. Sci. 103: 12115—12120.

D’Andrea, W. J., Lage, M., Martiny, J. B. H,. Laatsch, A.D., Amaral-Zettler, L. A., Sogin, M.L., and Y. Huang. 2006. Alkenone producers inferred from well-preserved 18S rDNA in Greenland lake sediments. J. Geophys. Res. 111, G03013, doi:10.1029/2005JG000121.