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Liang P., M. H. Serres and M. Riley: Genes and Proteins of Escherichia coli K-12 (GenProtEC),
Nucl. Acids. Res., (2000).
Link >>
Riley, M. and M. Serres: Genomics and Metabolism in Escherichia coli, in
The Prokaryotes, Springer-Verlag, New York, (2000).
Link >>
Serres, M. and M. Riley: Interim report on genomics of E. coli,
Ann. Rev. Microbiol.,
54:341-411 (2000).
Serres, M. and M. Riley : MultiFun, a multifunctional classification scheme for Escherichia coli K-12,
Microbial and Comparative Genomics,
5(4):205-222 (2001).
Serres, M.H., M. Gopal, L. Nahum, T., P. Liang, T. Gaasterland and M. Riley : A functional update of the E. coli K-12 genome,
Genome Biology
,
2(9):research0035.1-0035.7. Data included in (2001).
Link >>
Serres M.H. and M. Riley: Structural domains, protein modules, and sequence similarities enrich our understanding of the Shewanella oneidensis MR-1 proteome,
OMICS,
8:306-321 (2004).
Serres M.H., S. Goswami and M. Riley: GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins,
Nucleic Acids Res.,
32:D300-2 (2004).
Kolker E, A.F. Picone, M.Y. Galperin, M.F. Romine, R. Higdon, K.S. Makarova, N. Kolker, G.A. Anderson, X. Qiu, K.J. Auberry, G. Babnigg, A.S. Beliaev, P. Edlefsen, D.A. Elias, Y.A. Gorby, T. Holzman, J.A. Klappenbach, K.T. Konstantinidis, M.L. Land, M.S. Lipton, L.A. McCue, M. Monroe, L. Pasa-Tolic, G. Pinchuk, S. Purvine, M.H. Serres, S. Tsapin, B.A. Zakrajsek, W. Zhu, J. Zhou, F.W. Larimer, C.E. Lawrence, M. Riley, F.R. Collart, J.R. Yates 3rd, R.D. Smith, C.S. Giometti, K.H. Nealson, J.K. Fredrickson, J.M. Tiedje: Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations,
Proc Natl Acad Sci USA,
102:2099-2104 (2005).
Serres, M.H. and M. Riley: Gene fusions and gene duplications: relevance to genomic annotation and functional analysis,
BMC Genomics,
6:33-40 (2005).
Serres MH, Riley M. Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1: Predictions versus experiments.
J Bacteriol.,
2006 Jul;188(13):4601-9.
Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.
Nucleic Acids Res.,
2006 Jan 5;34(1):1-9. Print 2006.
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