BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 9VII-10R
         (542 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|346685|pir||JC1349 developmentally-regulated GTP-binding prot...    78  7e-26
gi|4127988|emb|CAA06775| (AJ005940) GTP-binding protein [Homo sa...    78  7e-26
gi|416914|sp|P32233|DRG_MOUSE DEVELOPMENTALLY REGULATED GTP-BIND...    78  7e-26
gi|416555|sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422...    78  3e-25
gi|1169421|sp|P43690|DRG_XENLA DEVELOPMENTALLY REGULATED GTP-BIN...    75  3e-25
gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN P...    82  3e-22
gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis deve...    80  5e-20
gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana] >...    68  6e-19
gi|2345148|gb|AAB67829| (AF014821) developmentally regulated GTP...    66  3e-17
gi|4557537|oth|NP_001379|PDRG2 developmentally regulated GTP-bin...    56  8e-15
gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family  [Met...    55  1e-14
gi|1723727|sp|P53295|YG3Y_YEAST HYPOTHETICAL 41.0 KD PROTEIN IN ...    53  3e-14
gi|465736|sp|P34280|YKK3_CAEEL HYPOTHETICAL 64.3 KD GTP-BINDING ...    55  5e-14
gi|2950451|emb|CAA17801| (AL022071) gtp-binding protein 1 [Schiz...    57  9e-14
gi|2654192 (AF035177) GTP-binding protein [Oncorhynchus tshawytsha]    54  1e-13
gi|417095|sp|P32235|GTP1_SCHPO GTP-BINDING PROTEIN 1 >gi|419815|...    56  1e-13
gi|2648391 (AE000956) GTP-binding protein [Archaeoglobus fulgidus]     55  2e-11
gi|2120160|pir||E64465 GTP-binding protein - Methanococcus janna...    48  6e-11
gi|3136028|emb|CAA19048| (AL023587) hypothetical protein [Schizo...    57  3e-09
gi|3258101|dbj|BAA30784| (AP000006) 387aa long hypothetical deve...    42  2e-08
gi|141353|sp|P17103|YRB1_HALCU HYPOTHETICAL 40 KD GTP-BINDING PR...    39  1e-07
gi|1698846 (U72850) GTP-binding protein [Thermoplasma acidophilum]     45  2e-05
gi|2494088|sp|Q57695|DAPA_METJA DIHYDRODIPICOLINATE SYNTHASE (DH...    34  0.77
gi|4155783 (AE001545) NADH oxidoreductase I [Helicobacter pylori...    31  5.1
gi|2735936 (AF015193) NADH dehydrogenase subunit 4 [Onchocerca v...    31  5.1
gi|2314437|gb|AAD08316| (AE000631) NADH-ubiquinone oxidoreductas...    31  6.7


>gi|346685|pir||JC1349 developmentally-regulated GTP-binding protein - mouse Length = 367 Score = 78.4 bits (190), Expect(2) = 7e-26 Identities = 34/74 (45%), Positives = 49/74 (65%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 +P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + TV+ C Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCM 323 Query: 183 IIHKSIIEKXKYAL 224 IHK++I++ KYAL Sbjct: 324 KIHKNLIKEFKYAL 337 Score = 59.7 bits (142), Expect(2) = 7e-26 Identities = 26/30 (86%), Positives = 27/30 (89%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG SVKHNPQKVGKDH L DEDV+QIVKK Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>gi|4127988|emb|CAA06775| (AJ005940) GTP-binding protein [Homo sapiens] >gi|4218945 (AF078103) developmentally regulated GTP-binding protein [Homo sapiens] Length = 367 Score = 78.4 bits (190), Expect(2) = 7e-26 Identities = 34/74 (45%), Positives = 49/74 (65%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 +P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + TV+ C Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCM 323 Query: 183 IIHKSIIEKXKYAL 224 IHK++I++ KYAL Sbjct: 324 KIHKNLIKEFKYAL 337 Score = 59.7 bits (142), Expect(2) = 7e-26 Identities = 26/30 (86%), Positives = 27/30 (89%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG SVKHNPQKVGKDH L DEDV+QIVKK Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>gi|416914|sp|P32233|DRG_MOUSE DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG (NEDD3 PROTEIN) >gi|220507|dbj|BAA01555| (D10715) GTP-binding protein [Mus musculus] Length = 367 Score = 78.4 bits (190), Expect(2) = 7e-26 Identities = 34/74 (45%), Positives = 49/74 (65%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 +P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + TV+ C Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCM 323 Query: 183 IIHKSIIEKXKYAL 224 IHK++I++ KYAL Sbjct: 324 KIHKNLIKEFKYAL 337 Score = 59.7 bits (142), Expect(2) = 7e-26 Identities = 26/30 (86%), Positives = 27/30 (89%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG SVKHNPQKVGKDH L DEDV+QIVKK Sbjct: 338 VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367
>gi|416555|sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP >gi|422452|pir||S33467 GTP-binding protein 128up - fruit fly (Drosophila melanogaster) >gi|630861|pir||S42582 GTP-binding protein - fruit fly (Drosophila melanogaster) >gi|311343|emb|CAA50701| (X71866) GTP-binding protein [Drosophila melanogaster] Length = 368 Score = 77.6 bits (188), Expect(2) = 3e-25 Identities = 34/74 (45%), Positives = 47/74 (62%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 IP+ VPI AH WN D LLE MW + L RIY KPKG P+V+ ++ +++ CN Sbjct: 264 IPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVVLHNERTSIEDFCN 323 Query: 183 IIHKSIIEKXKYAL 224 +H+SI ++ KYAL Sbjct: 324 KLHRSIAKEFKYAL 337 Score = 58.6 bits (139), Expect(2) = 3e-25 Identities = 26/31 (83%), Positives = 28/31 (89%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKKI 316 VWGSSVKH PQKVG +H LNDEDVVQIVKK+ Sbjct: 338 VWGSSVKHQPQKVGIEHVLNDEDVVQIVKKV 368
>gi|1169421|sp|P43690|DRG_XENLA DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG (XDRG) >gi|2120159|pir||I51426 GTP-binding protein DRG - African clawed frog >gi|433422|dbj|BAA02978| (D13865) GTP-binding protein DRG [Xenopus laevis] Length = 367 Score = 74.5 bits (180), Expect(2) = 3e-25 Identities = 32/74 (43%), Positives = 46/74 (61%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 +P+ VPI AH WN D LLE +W+ ++L+RIY KPKG P+V+ + C Sbjct: 264 VPHCVPISAHHRWNFDDLLEKIWDYLQLVRIYTKPKGQLPDYTSPVVLPCSHTAAEDFCT 323 Query: 183 IIHKSIIEKXKYAL 224 IHK++I++ KYAL Sbjct: 324 KIHKNLIKEFKYAL 337 Score = 61.7 bits (147), Expect(2) = 3e-25 Identities = 27/30 (90%), Positives = 28/30 (93%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWGSSVKHNPQKVGKDH L DEDV+QIVKK Sbjct: 338 VWGSSVKHNPQKVGKDHVLEDEDVIQIVKK 367
>gi|731276|sp|P39729|YAD6_YEAST HYPOTHETICAL 40.7 KD PROTEIN IN PYK1-SNC1 INTERGENIC REGION >gi|1077475|pir||S51983 FUN11 protein - yeast (Saccharomyces cerevisiae) >gi|595548 (U12980) Fun11p [Saccharomyces cerevisiae] Length = 369 Score = 81.5 bits (198), Expect(2) = 3e-22 Identities = 36/76 (47%), Positives = 56/76 (73%), Gaps = 1/76 (1%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 IPN+VPI + ++WN+D+LL+ MW+ + L+RIY KPKG +P+V++ D+ +VK CN Sbjct: 266 IPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCN 325 Query: 183 IIHKSIIEKXKYAL-YG 230 IHKS+++ + AL YG Sbjct: 326 QIHKSLVDDFRNALVYG 342 Score = 44.5 bits (103), Expect(2) = 3e-22 Identities = 21/30 (70%), Positives = 23/30 (76%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 V+GSSVKH PQ VG H L DEDVV I+KK Sbjct: 340 VYGSSVKHQPQYVGLSHILEDEDVVTILKK 369
>gi|1749478|dbj|BAA13797| (D89135) similar to Xenopus laevis developing GTP-binding protein DRG, SWISS-PROT Accession Number P43690 [Schizosaccharomyces pombe] Length = 366 Score = 79.6 bits (193), Expect(2) = 5e-20 Identities = 32/73 (43%), Positives = 51/73 (69%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 IPN+VPIC ++ WNID+L E+MW+ + L+R+Y +P+G EP++++ +TV+ CN Sbjct: 263 IPNAVPICGNRGWNIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCN 322 Query: 183 IIHKSIIEKXKYA 221 IH SI + K+A Sbjct: 323 NIHSSIKSQFKHA 335 Score = 38.7 bits (88), Expect(2) = 5e-20 Identities = 18/31 (58%), Positives = 21/31 (67%) Query: 221 FVWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 +VWG SV + +VG H L DEDVV IVKK Sbjct: 336 YVWGKSVPYPGMRVGLSHVLLDEDVVTIVKK 366
>gi|2058456 (U66408) GTP-binding protein [Arabidopsis thaliana] >gi|2345150|gb|AAB67830| (AF014822) developmentally regulated GTP binding protein [Arabidopsis thaliana] Length = 399 Score = 67.9 bits (163), Expect(2) = 6e-19 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKN--TVKHLC 179 PNS+ I + + N+D+LL MW+ M L+R+Y KP+G +EP V+ D+ TV+ C Sbjct: 263 PNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQPDFDEPFVLSSDRGGCTVEDFC 322 Query: 180 NIIHKSIIEKXKYAL 224 N +H+++++ KYAL Sbjct: 323 NHVHRTLVKDMKYAL 337 Score = 46.9 bits (109), Expect(2) = 6e-19 Identities = 20/30 (66%), Positives = 22/30 (72%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG+S +HNPQ G L DEDVVQIVKK Sbjct: 338 VWGTSTRHNPQNCGLSQHLEDEDVVQIVKK 367
>gi|2345148|gb|AAB67829| (AF014821) developmentally regulated GTP binding protein [Pisum sativum] Length = 399 Score = 66.3 bits (159), Expect(2) = 3e-17 Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKN--TVKHLC 179 PNSV I + + N+D+LL MW+ M L+R+Y KP+G +P+V+ D+ +V+ C Sbjct: 263 PNSVVISCNLKLNLDRLLSRMWDEMGLVRVYTKPQGQQPDFSDPVVLSADRGGCSVEDFC 322 Query: 180 NIIHKSIIEKXKYAL 224 N IH+S+++ KY L Sbjct: 323 NHIHRSLVKDVKYVL 337 Score = 42.6 bits (98), Expect(2) = 3e-17 Identities = 19/30 (63%), Positives = 20/30 (66%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG +H PQ G H L DEDVVQIVKK Sbjct: 338 VWGIMARHYPQHCGLSHVLRDEDVVQIVKK 367
>gi|4557537|oth|NP_001379|PDRG2 developmentally regulated GTP-binding protein 2 >gi|1706518|sp|P55039|DRG_HUMAN DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN DRG >gi|1082424|pir||A55014 GTP-binding protein - human >gi|577779|emb|CAA56730| (X80754) GTP-binding protein [Homo sapiens] Length = 364 Score = 55.8 bits (132), Expect(2) = 8e-15 Identities = 30/73 (41%), Positives = 43/73 (58%) Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185 PNSV I + N+D LLE +W + L IY K K G + D +I R +V+H+C+ Sbjct: 263 PNSVVISCGMKLNLDYLLEMLWEYLALTCIYTK-KRGQRPDFTDAIILRKGASVEHVCHR 321 Query: 186 IHKSIIEKXKYAL 224 IH+S+ + KYAL Sbjct: 322 IHRSLASQFKYAL 334 Score = 44.9 bits (104), Expect(2) = 8e-15 Identities = 18/30 (60%), Positives = 24/30 (80%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG+S K++PQ+VG H + EDV+QIVKK Sbjct: 335 VWGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364
>gi|2622747 (AE000921) GTP-binding protein, GTP1/OBG family [Methanobacterium thermoautotrophicum] Length = 380 Score = 55.4 bits (131), Expect(2) = 1e-14 Identities = 27/72 (37%), Positives = 47/72 (64%) Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185 P ++ I A ++ NID+L E ++N + LIRIY KP+G +EP++I R+ +TV +C Sbjct: 278 PEALFISADRDINIDELREEIFNRLGLIRIYLKPQGKKADYDEPLII-REGSTVGDVCQK 336 Query: 186 IHKSIIEKXKYA 221 +H+ + K ++A Sbjct: 337 LHRDFVRKFRHA 348 Score = 44.9 bits (104), Expect(2) = 1e-14 Identities = 20/30 (66%), Positives = 25/30 (82%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWGSSVK + QKVG +H LNDEDV++I+ K Sbjct: 350 VWGSSVKFDGQKVGLEHVLNDEDVLRIIIK 379
>gi|1723727|sp|P53295|YG3Y_YEAST HYPOTHETICAL 41.0 KD PROTEIN IN YIP1-CBP4 INTERGENIC REGION >gi|2120158|pir||S64487 hypothetical protein YGR173w - yeast (Saccharomyces cerevisiae) >gi|1323306|emb|CAA97199| (Z72958) ORF YGR173w [Saccharomyces cerevisiae] Length = 368 Score = 53.5 bits (126), Expect(2) = 3e-14 Identities = 23/73 (31%), Positives = 44/73 (59%) Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185 PN+V + + + ++E +W + L R+Y K +G + ++P+V+ R+ +T+ LC+ Sbjct: 267 PNTVVMSCEMDLGLQDVVEEIWYQLNLSRVYTKKRGVRPVFDDPLVV-RNNSTIGDLCHG 325 Query: 186 IHKSIIEKXKYAL 224 IH+ +K KYAL Sbjct: 326 IHRDFKDKFKYAL 338 Score = 45.3 bits (105), Expect(2) = 3e-14 Identities = 18/30 (60%), Positives = 23/30 (76%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWGSS KH+PQK G +H ++DEDVV + K Sbjct: 339 VWGSSAKHSPQKCGLNHRIDDEDVVSLFAK 368
>gi|465736|sp|P34280|YKK3_CAEEL HYPOTHETICAL 64.3 KD GTP-BINDING PROTEIN C02F5.3 IN CHROMOSOME III >gi|630509|pir||S44605 C02F5.3 protein - Caenorhabditis elegans >gi|289610 (L14745) homology with GTP binding protein; putative [Caenorhabditis elegans] Length = 573 Score = 55.0 bits (130), Expect(2) = 5e-14 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKID--EEPIVIKRDKNTVKHL 176 +P+ V I N+D LLE MW + L+R+Y K K GN D E +I R T++H Sbjct: 262 MPHHVVISCEMNLNMDYLLEKMWEYLALVRVYTK-KPGNAPDLGPEDGIILRGGATIEHC 320 Query: 177 CNIIHKSIIEKXKYAL 224 C+ +H+SI + +YA+ Sbjct: 321 CHALHRSIAAQLRYAI 336 Score = 43.0 bits (99), Expect(2) = 5e-14 Identities = 16/31 (51%), Positives = 26/31 (83%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKKI 316 VWG+S K +PQ+VG H+L+ EDV+QI++++ Sbjct: 337 VWGTSTKFSPQRVGLHHKLDHEDVIQIMRRL 367
>gi|2950451|emb|CAA17801| (AL022071) gtp-binding protein 1 [Schizosaccharomyces pombe] Length = 135 Score = 56.6 bits (134), Expect(2) = 9e-14 Identities = 27/74 (36%), Positives = 46/74 (61%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 +P SV I + + N+D L E +W + L RIY K KG E +++++ +T++ +CN Sbjct: 33 LPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALIVRKG-STIEQVCN 91 Query: 183 IIHKSIIEKXKYAL 224 IH+++ E+ KYAL Sbjct: 92 RIHRTLAEQLKYAL 105 Score = 40.6 bits (93), Expect(2) = 9e-14 Identities = 17/30 (56%), Positives = 22/30 (72%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG+S KH+PQ VG +H + + DVV IV K Sbjct: 106 VWGTSAKHSPQVVGLNHRVEEGDVVTIVTK 135
>gi|2654192 (AF035177) GTP-binding protein [Oncorhynchus tshawytsha] Length = 364 Score = 53.9 bits (127), Expect(2) = 1e-13 Identities = 28/73 (38%), Positives = 44/73 (59%) Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNI 185 P+SV I + N+D LLE +W + LI +Y K K G + D +I R +V+H+C+ Sbjct: 263 PHSVVISCGMKLNLDFLLERLWEYLALICLYTK-KRGERPDFSDAIIMRRGASVEHVCHR 321 Query: 186 IHKSIIEKXKYAL 224 IH+++ + KYAL Sbjct: 322 IHRTLASQFKYAL 334 Score = 43.0 bits (99), Expect(2) = 1e-13 Identities = 18/30 (60%), Positives = 23/30 (76%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG+S K +PQ+VG H + EDV+QIVKK Sbjct: 335 VWGTSTKFDPQRVGLTHIMEHEDVIQIVKK 364
>gi|417095|sp|P32235|GTP1_SCHPO GTP-BINDING PROTEIN 1 >gi|419815|pir||JT0741 GTP-binding protein 1 - fission yeast (Schizosaccharomyces pombe) >gi|173396 (L00671) GTP-binding protein [Schizosaccharomyces pombe] Length = 364 Score = 55.8 bits (132), Expect(2) = 1e-13 Identities = 28/74 (37%), Positives = 45/74 (59%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 +P SV I + + N+D L E +W + L RIY K KG E ++I + +T++ +CN Sbjct: 262 LPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALIIHKG-STIEQVCN 320 Query: 183 IIHKSIIEKXKYAL 224 IH+++ E+ KYAL Sbjct: 321 RIHRTLAEQLKYAL 334 Score = 40.6 bits (93), Expect(2) = 1e-13 Identities = 17/30 (56%), Positives = 22/30 (72%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG+S KH+PQ VG +H + + DVV IV K Sbjct: 335 VWGTSAKHSPQVVGLNHRVEEGDVVTIVTK 364
>gi|2648391 (AE000956) GTP-binding protein [Archaeoglobus fulgidus] Length = 355 Score = 55.4 bits (131), Expect(2) = 2e-11 Identities = 24/73 (32%), Positives = 44/73 (59%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 + +++ + A K N+D L E ++ +E IR+Y KP GG EP++++R TV+ +C Sbjct: 254 VADAIKVSAEKGINLDLLKEQIYRKLEFIRVYLKPPGGKVDFSEPMILRRGA-TVEDICR 312 Query: 183 IIHKSIIEKXKYA 221 +H+ +E +YA Sbjct: 313 KLHRDFVENFRYA 325 Score = 33.6 bits (75), Expect(2) = 2e-11 Identities = 13/27 (48%), Positives = 19/27 (70%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQI 304 VWG SVK + Q+VG +H + D D++ I Sbjct: 327 VWGKSVKFDGQRVGLEHVVEDGDIITI 353
>gi|2120160|pir||E64465 GTP-binding protein - Methanococcus jannaschii >gi|1591967 (U67573) GTP-binding protein, member of GTP1/OBG-family [Methanococcus jannaschii] Length = 391 Score = 47.6 bits (111), Expect(2) = 6e-11 Identities = 22/67 (32%), Positives = 39/67 (57%) Query: 21 ICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNIIHKSI 200 + +K N+D L E ++ + I+IY KP+G +EP++++R TVK +C +HK Sbjct: 294 VSGNKGINLDLLKEKIYEKLGFIKIYLKPQGKKPDFDEPLIMRRGA-TVKDVCEKLHKDF 352 Query: 201 IEKXKYA 221 + +YA Sbjct: 353 VRNFRYA 359 Score = 39.9 bits (91), Expect(2) = 6e-11 Identities = 17/30 (56%), Positives = 21/30 (69%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG S KH Q+VG DH+L D D++ IV K Sbjct: 361 VWGKSAKHPGQRVGLDHKLEDGDILTIVIK 390
>gi|3136028|emb|CAA19048| (AL023587) hypothetical protein [Schizosaccharomyces pombe] Length = 347 Score = 56.6 bits (134), Expect(2) = 3e-09 Identities = 27/74 (36%), Positives = 46/74 (61%) Query: 3 IPNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCN 182 +P SV I + + N+D L E +W + L RIY K KG E +++++ +T++ +CN Sbjct: 261 LPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEMPDFSEALIVRKG-STIEQVCN 319 Query: 183 IIHKSIIEKXKYAL 224 IH+++ E+ KYAL Sbjct: 320 RIHRTLAEQLKYAL 333 Score = 25.4 bits (54), Expect(2) = 3e-09 Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 224 VWGSSVKHNPQKV 262 VWG+S KH+PQ V Sbjct: 334 VWGTSAKHSPQVV 346
>gi|3258101|dbj|BAA30784| (AP000006) 387aa long hypothetical developmentally regulated GTP-binding protein [Pyrococcus horikoshii] Length = 387 Score = 41.8 bits (96), Expect(2) = 2e-08 Identities = 22/69 (31%), Positives = 41/69 (58%) Query: 15 VPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNIIHK 194 VP+ A K N++ + E+++++ E+IR++ K G + PI +KR TV + IHK Sbjct: 290 VPVSAKKRINLEAVKEAIYDVAEIIRVFTK-SPGEEPAYPPIALKRGA-TVMDVAERIHK 347 Query: 195 SIIEKXKYA 221 +++ +YA Sbjct: 348 DLVKNFRYA 356 Score = 37.5 bits (85), Expect(2) = 2e-08 Identities = 17/30 (56%), Positives = 20/30 (66%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 VWG SVK Q+VG DH L D D+V+I K Sbjct: 358 VWGKSVKFPGQRVGPDHVLEDGDIVEIHAK 387
>gi|141353|sp|P17103|YRB1_HALCU HYPOTHETICAL 40 KD GTP-BINDING PROTEIN IN RIBOSOMAL PROTEIN GENE CLUSTER 5'REGION >gi|76329|pir||QQHS4C hypothetical protein, 40K - Halobacterium cutirubrum >gi|43450|emb|CAA33176| (X15078) ORF protein [Halobacterium cutirubrum] Length = 370 Score = 38.7 bits (88), Expect(2) = 1e-07 Identities = 23/71 (32%), Positives = 39/71 (54%) Query: 9 NSVPICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNII 188 +++ I A +E +D L E MW + LIRIY G EEP++I+R + TV + Sbjct: 269 DAIFISAAEEKGLDVLKERMWRALGLIRIYMDKPGRGVDREEPLIIRRGE-TVDDAVQKL 327 Query: 189 HKSIIEKXKYA 221 ++ E+ ++A Sbjct: 328 GGTLDERFRFA 338 Score = 37.5 bits (85), Expect(2) = 1e-07 Identities = 15/30 (50%), Positives = 23/30 (76%) Query: 224 VWGSSVKHNPQKVGKDHELNDEDVVQIVKK 313 V G S +H+ Q+VG+DH L DEDV+++V + Sbjct: 340 VTGPSAQHDDQQVGRDHVLEDEDVLRVVAR 369
>gi|1698846 (U72850) GTP-binding protein [Thermoplasma acidophilum] Length = 360 Score = 44.5 bits (103), Expect(2) = 2e-05 Identities = 21/68 (30%), Positives = 43/68 (62%) Query: 21 ICAHKEWNIDKLLESMWNMMELIRIYPKPKGGNKIDEEPIVIKRDKNTVKHLCNIIHKSI 200 + A + I++L E ++ + LIRIY + K G ++P+++ R+ TV+ +C I++S+ Sbjct: 263 VSAKTGYGIEELKEGIFRSLNLIRIYLRNKAGVVDFQKPLIV-REGTTVREVCRKINRSM 321 Query: 201 IEKXKYAL 224 I+ +YA+ Sbjct: 322 IDSFRYAI 329 Score = 23.9 bits (50), Expect(2) = 2e-05 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 257 KVGKDHELNDEDVVQIVKK 313 +VG D+ L DED+V I+ + Sbjct: 341 RVGIDYPLMDEDIVTIISR 359
>gi|2494088|sp|Q57695|DAPA_METJA DIHYDRODIPICOLINATE SYNTHASE (DHDPS) >gi|2127847|pir||E64330 dihydrodipicolinate synthase (EC 4.2.1.52) - Methanococcus jannaschii >gi|1590977 (U67480) dihydrodipicolinate synthase (dapA) [Methanococcus jannaschii] Length = 289 Score = 34.0 bits (76), Expect = 0.77 Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%) Query: 6 PNSVPICAHKEWNIDKLLESMWNMMELIRIYPKPK----GGNKIDEEPIVIKRDKNTVKH 173 P +V + A + NI + E+ N+ ++ + K GN PI+ K + Sbjct: 144 PKTVKLLAEEYSNISAVKEANPNLSQVSELIHDAKITVLSGNDELTLPIIALGGKGVISV 203 Query: 174 LCNIIHKSIIEKXKYALYGD 233 + NI+ K +E YAL GD Sbjct: 204 VANIVPKEFVEMVNYALEGD 223
>gi|4155783 (AE001545) NADH oxidoreductase I [Helicobacter pylori J99] Length = 512 Score = 31.3 bits (69), Expect = 5.1 Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 12/45 (26%) Query: 227 IQSIFXFFYYTFMNNIT*MFYCIFISFDY------------NWFFINFISSFGFWIY 93 I S FF YTF+ ++ + ++I +DY +W+ +NF S W++ Sbjct: 156 IYSGMKFFLYTFLASLCMLLGILYIGYDYANNYGMMSFDILDWYQLNFSSGIKTWLF 212
>gi|2735936 (AF015193) NADH dehydrogenase subunit 4 [Onchocerca volvulus] Length = 410 Score = 31.3 bits (69), Expect = 5.1 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 218 IFXFFYYTFMNNIT*MFYCIFISFDYNWF-FINFISSFGF 102 + FF+ F+ + MF+ ++ FDY+WF + F SF F Sbjct: 9 VLLFFFSPFLFFVFFMFFVLYGFFDYSWFGCLFFFDSFNF 48
>gi|2314437|gb|AAD08316| (AE000631) NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) [Helicobacter pylori 26695] Length = 512 Score = 30.9 bits (68), Expect = 6.7 Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 12/45 (26%) Query: 227 IQSIFXFFYYTFMNNIT*MFYCIFISFDY------------NWFFINFISSFGFWIY 93 I S FF YTF+ ++ + ++I +DY +W+ +NF S W++ Sbjct: 156 IYSGMKFFLYTFLASLCMLLGILYIGYDYANNYGMMSFDILDWYQLNFSSGVKTWLF 212 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 17, 1999 5:33 AM Number of letters in database: 113,023,754 Number of sequences in database: 369,800 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82384738 Number of Sequences: 369800 Number of extensions: 1294141 Number of successful extensions: 3122 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 3068 Number of HSP's gapped (non-prelim): 48 length of query: 180 length of database: 113,023,754 effective HSP length: 52 effective length of query: 128 effective length of database: 93794154 effective search space: 12005651712 effective search space used: 12005651712 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 67 (30.5 bits)