BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2X-1R
         (624 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2739289|emb|CAA71196| (Y10108) cytochrome b558/566, subunit B...    32  2.7


>gi|2739289|emb|CAA71196| (Y10108) cytochrome b558/566, subunit B [Sulfolobus acidocaldarius]
           Length = 310
           
 Score = 32.5 bits (72), Expect = 2.7
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 266 LKLCINFILPSTLGVKIFRIMHVTIL 189
           L++ +N ILPSTLG+ ++   H+T+L
Sbjct: 212 LEILMNMILPSTLGIDLYNPYHITLL 237


  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  Apr 17, 1999  5:33 AM
  Number of letters in database: 113,023,754
  Number of sequences in database:  369,800
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97189714
Number of Sequences: 369800
Number of extensions: 1527653
Number of successful extensions: 1683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1682
Number of HSP's gapped (non-prelim): 1
length of query: 208
length of database: 113023754
effective HSP length: 53
effective length of query: 154
effective length of database: 93424354
effective search space: 14387350516
effective search space used: 14387350516
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)