BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII36R
         (680 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1082407|pir||A55314 glycine--tRNA ligase (EC 6.1.1.14) precur...   141  3e-33
gi|493066 (U09510) glycyl-tRNA synthetase [Homo sapiens]              141  3e-33
gi|730868|sp|P41250|SYG_HUMAN GLYCYL-TRNA SYNTHETASE (GLYCINE--T...   141  3e-33
gi|2132408|pir||S69067 probable glycine--tRNA ligase (EC 6.1.1.1...   137  9e-32
gi|1351154|sp|Q10039|SYG_CAEEL PROBABLE GLYCYL-TRNA SYNTHETASE (...   129  1e-29
gi|586057|sp|P38088|SYG_YEAST GLYCYL-TRNA SYNTHETASE (GLYCINE--T...   129  2e-29
gi|1351153|sp|Q04451|SYG_BOMMO GLYCYL-TRNA SYNTHETASE (GLYCINE--...   127  6e-29
gi|3334349|sp|O23627|SYG_ARATH GLYCYL-TRNA SYNTHETASE (GLYCINE--...   125  3e-28
gi|422391|pir||A46636 glycine--tRNA ligase (EC 6.1.1.14) - silkworm   122  2e-27
gi|1711632|sp|Q10179|SYG_SCHPO PUTATIVE GLYCYL-TRNA SYNTHETASE (...   122  3e-27
gi|2500998|sp|Q57681|SYG_METJA PROBABLE GLYCYL-TRNA SYNTHETASE (...   120  1e-26
gi|3258043|dbj|BAA30726| (AP000006) 570aa long hypothetical glyc...   118  3e-26
gi|3334352|sp|O27874|SYG_METTH PROBABLE GLYCYL-TRNA SYNTHETASE (...   110  8e-24
gi|3242765 (AC005154) glycyl-tRNA synthetase; similar to protein...   106  1e-22
gi|3334354|sp|O29346|SYG_ARCFU PROBABLE GLYCYL-TRNA SYNTHETASE (...    92  3e-18
gi|2078043|emb|CAB08466| (Z95208) glyS [Mycobacterium tuberculosis]    81  7e-15
gi|2147427|pir||S58522 glycyl-tRNA synthetase - Thermus thermoph...    78  4e-14
gi|2392169|pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna ...    77  1e-13
gi|2500997|sp|P75425|SYG_MYCPN GLYCYL-TRNA SYNTHETASE (GLYCINE--...    77  1e-13
gi|2829475|sp|P56206|SYG_THETH GLYCYL-TRNA SYNTHETASE (GLYCINE--...    77  1e-13
gi|2688266 (AE001142) glycyl-tRNA synthetase (glyS) # [Borrelia ...    71  7e-12
gi|1351155|sp|P47493|SYG_MYCGE GLYCYL-TRNA SYNTHETASE (GLYCINE--...    71  7e-12
gi|3322974 (AE001241) glycyl-tRNA synthetase (glyS) [Treponema p...    70  1e-11
gi|2664208|emb|CAA10903| (AJ222643) Glycyl-tRNA synthetase [Ther...    68  5e-11
gi|4388929|pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Therm...    64  1e-09
gi|2392770 (AC002534) similar to glycyl tRNA synthetase [Arabido...    40  0.014
gi|1169007|sp|Q03727|COMA_STRPN TRANSPORT ATP-BINDING PROTEIN CO...    31  9.0
gi|98020|pir||A39203 comA protein - Streptococcus pneumoniae           31  9.0


>gi|1082407|pir||A55314 glycine--tRNA ligase (EC 6.1.1.14) precursor - human >gi|1311463|dbj|BAA06338| (D30658) glycyl tRNA synthetase [Homo sapiens] Length = 739 Score = 141 bits (353), Expect = 3e-33 Identities = 78/182 (42%), Positives = 112/182 (60%), Gaps = 11/182 (6%) Query: 548 RRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCKD--LFEIESTI 375 + E L++R F +F+IYGGVSGLYD GP+G +LKN I++ +R F ++ + EI+ T+ Sbjct: 123 KMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTM 182 Query: 374 LTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXX--------XXXXXXEIDKM 219 LTP VLK SGH+DKF D ++ D NGEC+RADH E++ + Sbjct: 183 LTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESV 242 Query: 218 IEKLECMSLEEIDKVVEDYKILSK-XKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQ 42 + +L+ +E+ + +Y + S N LS FNLMF+TF+GP Y RPETAQ Sbjct: 243 LAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQ 302 Query: 41 GQFVNXXXVYELN 3 G F+N + E N Sbjct: 303 GIFLNFKRLLEFN 315
>gi|493066 (U09510) glycyl-tRNA synthetase [Homo sapiens] Length = 685 Score = 141 bits (353), Expect = 3e-33 Identities = 78/182 (42%), Positives = 112/182 (60%), Gaps = 11/182 (6%) Query: 548 RRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCKD--LFEIESTI 375 + E L++R F +F+IYGGVSGLYD GP+G +LKN I++ +R F ++ + EI+ T+ Sbjct: 69 KMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTM 128 Query: 374 LTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXX--------XXXXXXEIDKM 219 LTP VLK SGH+DKF D ++ D NGEC+RADH E++ + Sbjct: 129 LTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESV 188 Query: 218 IEKLECMSLEEIDKVVEDYKILSK-XKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQ 42 + +L+ +E+ + +Y + S N LS FNLMF+TF+GP Y RPETAQ Sbjct: 189 LAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQ 248 Query: 41 GQFVNXXXVYELN 3 G F+N + E N Sbjct: 249 GIFLNFKRLLEFN 261
>gi|730868|sp|P41250|SYG_HUMAN GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|600727 (U09587) glycyl-tRNA synthetase [Homo sapiens] Length = 685 Score = 141 bits (353), Expect = 3e-33 Identities = 78/182 (42%), Positives = 112/182 (60%), Gaps = 11/182 (6%) Query: 548 RRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCKD--LFEIESTI 375 + E L++R F +F+IYGGVSGLYD GP+G +LKN I++ +R F ++ + EI+ T+ Sbjct: 69 KMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTM 128 Query: 374 LTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXX--------XXXXXXEIDKM 219 LTP VLK SGH+DKF D ++ D NGEC+RADH E++ + Sbjct: 129 LTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESV 188 Query: 218 IEKLECMSLEEIDKVVEDYKILSK-XKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQ 42 + +L+ +E+ + +Y + S N LS FNLMF+TF+GP Y RPETAQ Sbjct: 189 LAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQ 248 Query: 41 GQFVNXXXVYELN 3 G F+N + E N Sbjct: 249 GIFLNFKRLLEFN 261
>gi|2132408|pir||S69067 probable glycine--tRNA ligase (EC 6.1.1.14) - yeast (Saccharomyces cerevisiae) >gi|1230687 (U51033) Highly similar to Glycyl-tRNA synthetase (Swiss Prot. accession numbers P41250 and P38088) [Saccharomyces cerevisiae] Length = 618 Score = 137 bits (341), Expect = 9e-32 Identities = 74/186 (39%), Positives = 115/186 (61%), Gaps = 11/186 (5%) Query: 560 NKAERRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLFEI 387 ++ ++ E+ LR+R F SF IYGGVSGL+DLGP G L+N ++R++R+ F +++ ++ Sbjct: 7 SERDKLESTLRRRFFYTPSFEIYGGVSGLFDLGPPGCQLQNNLIRLWREHFIMEENMLQV 66 Query: 386 ESTILTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEI------- 228 + +LTPY VLK SGH+DKF D + + GE YRADH ++ Sbjct: 67 DGPMLTPYDVLKTSGHVDKFTDWMCRNPKTGEYYRADHLIEQTLKKRLLDKDVNPQDMKN 126 Query: 227 -DKMIEKLECMSLEEIDKVVEDYKILSKXKN-TLSKSQRFNLMFETFVGPKKKNXIYXRP 54 +K++ ++ S E++ V+++Y I N L FNLMFET +G + + RP Sbjct: 127 MEKILTTIDGFSGPELNLVMQEYNINDPVTNDVLDALTSFNLMFETKIGASGQLKAFLRP 186 Query: 53 ETAQGQFVNXXXVYELN 3 ETAQGQF+N + E+N Sbjct: 187 ETAQGQFLNFNKLLEIN 203
>gi|1351154|sp|Q10039|SYG_CAEEL PROBABLE GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|727447 (U23412) coded for by C. elegans cDNA yk46g2.5; coded for by C. elegans cDNA yk46g2.3; similar to glycyl-tRNA synthetase [Caenorhabditis elegans] Length = 746 Score = 129 bits (322), Expect = 1e-29 Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 11/180 (6%) Query: 542 ETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCKD--LFEIESTILT 369 E +L++R F SF+IYGGV+GLYD GP+G SLK +L+ +R F + + E++ T LT Sbjct: 139 EDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCSLKANMLQEWRKHFILEEGMLEVDCTSLT 198 Query: 368 PYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXX--------XXXXXXXXEIDKMIE 213 P VLKASGH+D+F D ++ D NGEC+RADH + ++ Sbjct: 199 PEPVLKASGHVDRFADWMVKDMKNGECFRADHLIKNSIEKLLNDKKTSAAVKQDGQDVLA 258 Query: 212 KLECMSLEEIDKVVEDYKILSK-XKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQ 36 +LE +++ +V+ + S N L++ FNLMF T +GP + RPETAQG Sbjct: 259 RLEGFDNKDMHEVITRFNFKSPITGNDLTEPIAFNLMFPTQIGPTGDFKAFLRPETAQGI 318 Query: 35 FVNXXXVYELN 3 FVN + E N Sbjct: 319 FVNFKRLLEFN 329
>gi|586057|sp|P38088|SYG_YEAST GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|1078212|pir||S48285 probable glycine--tRNA ligase (EC 6.1.1.14) GRS1 - yeast (Saccharomyces cerevisiae) >gi|536402|emb|CAA85078| (Z35990) ORF YBR121c [Saccharomyces cerevisiae] >gi|565058|emb|CAA55623| (X78993) probable transfer RNA-Gly synthetase [Saccharomyces cerevisiae] Length = 667 Score = 129 bits (321), Expect = 2e-29 Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 46/188 (24%) Query: 566 PMNKAERRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLF 393 P N+ E+ E++LR R F A +F +YGGVSGLYD GP G + +N I+ +R F +D+ Sbjct: 14 PFNR-EQLESVLRGRFFYAPAFDLYGGVSGLYDYGPPGCAFQNNIIDAWRKHFILEEDML 72 Query: 392 EIESTILTPYQVLKASGHIDKFCDILLFDSVNGECYRADHY------------------- 270 E++ T+LTPY+VLK SGH+DKF D + D GE +RADH Sbjct: 73 EVDCTMLTPYEVLKTSGHVDKFSDWMCRDLKTGEIFRADHLVEEVLEARLKGDQEARGLV 132 Query: 269 --XXXXXXXXXXXXEIDKMIEKLECMSLEEIDKVVEDY-KILSK---------------- 147 + K +++++ + L+ D VV++Y +IL+K Sbjct: 133 EDANAAAKDDAEKKKRKKKVKQIKAVKLD--DDVVKEYEEILAKIDGYSGPELGELMEKY 190 Query: 146 ------XKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQFVNXXXVYELN 3 TL + FNLMFET +GP + Y RPETAQGQF+N + E N Sbjct: 191 DIGNPVTGETLESPRAFNLMFETAIGPSGQLKGYLRPETAQGQFLNFNKLLEFN 244
>gi|1351153|sp|Q04451|SYG_BOMMO GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|665680 (L08106) glycyl-tRNA synthetase [Bombyx mori] Length = 680 Score = 127 bits (317), Expect = 6e-29 Identities = 68/182 (37%), Positives = 112/182 (61%), Gaps = 11/182 (6%) Query: 548 RRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLFEIESTI 375 + E ++++R F SF+IYGG++G +D GP+G +LK+ ++ +++ F + + E+E +I Sbjct: 69 KMEDLIKRRFFYDQSFAIYGGITGQFDFGPMGCALKSNMIHLWKKFFILQEQMLEVECSI 128 Query: 374 LTPYQVLKASGHIDKFCDILLFDSVNGECYRADH--------YXXXXXXXXXXXXEIDKM 219 LTP VLKASGH+++F D++ D GEC+R DH EI+ + Sbjct: 129 LTPEPVLKASGHVERFADLMTKDIKTGECFRLDHLIKGHLEKIKSDKNTKIELKAEIEDI 188 Query: 218 IEKLECMSLEEIDKVVEDYKILSKXK-NTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQ 42 + KL+ M+ +E+ +++ +++ S N L+ FNLMF T +GP + RPETAQ Sbjct: 189 LIKLDGMNADEMSALMKRFEMKSPISGNDLTPPIEFNLMFNTQIGPSGLVKGFLRPETAQ 248 Query: 41 GQFVNXXXVYELN 3 G FVN + E N Sbjct: 249 GIFVNFKRLLEFN 261
>gi|3334349|sp|O23627|SYG_ARATH GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|2564215|emb|CAA05162| (AJ002062) glycyl-tRNA synthetase [Arabidopsis thaliana] Length = 729 Score = 125 bits (311), Expect = 3e-28 Identities = 72/177 (40%), Positives = 102/177 (56%), Gaps = 12/177 (6%) Query: 533 LRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLFEIESTILTPYQ 360 L +R F SF IY GV+GL+D GP G ++K+ +L +R F +++ E++ +TP Sbjct: 124 LERRLFYIPSFKIYSGVAGLFDYGPPGCAIKSNVLSFWRQHFILEENMLEVDCPCVTPEV 183 Query: 359 VLKASGHIDKFCDILLFDSVNGECYRADH---------YXXXXXXXXXXXXEIDKMIEKL 207 VLKASGH+DKF D+++ D G CYRADH E+ ++ + Sbjct: 184 VLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDYCTEKLEKDLTISAEKAAELKDVLAVM 243 Query: 206 ECMSLEEIDKVVEDYKILS-KXKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQFV 30 E S E++ + +Y I + KN LS FNLMF+T +GP Y RPETAQG FV Sbjct: 244 EDFSPEQLGAKIREYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFV 303 Query: 29 NXXXVYELN 3 N +Y N Sbjct: 304 NFKDLYYYN 312
>gi|422391|pir||A46636 glycine--tRNA ligase (EC 6.1.1.14) - silkworm Length = 687 Score = 122 bits (303), Expect = 2e-27 Identities = 69/182 (37%), Positives = 112/182 (60%), Gaps = 17/182 (9%) Query: 548 RRETMLRKRXFIASSFS------IYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLF 393 + E ++++R F SFS IYGG++G +D GP+G +LK+ ++ +++ F + + Sbjct: 69 KMEDLIKRRFFYDQSFSMTSRFAIYGGITGQFDFGPMGCALKSNMIHLWKKFFILQEQML 128 Query: 392 EIESTILTPYQVLKASGHIDKFCDILLFDSVNGECYRADH--------YXXXXXXXXXXX 237 E+E +ILTP VLKASGH+++F D++ D GEC+R DH Sbjct: 129 EVECSILTPEPVLKASGHVERFADLMTKDIKTGECFRLDHLIKGHLEKIKSDKNTKIELK 188 Query: 236 XEIDKMIEKLECMSLEEIDKVVEDYKILSKXK-NTLSKSQRFNLMFETFVGPKKKNXIYX 60 EI+ ++ KL+ M+ +E+ +++ +++ S N L+ FNLMF T +GP + Sbjct: 189 AEIEDILIKLDGMNADEMSALMKRFEMKSPISGNDLTPPIEFNLMFNTQIGPSGLVKGFL 248 Query: 59 RPETAQGQFVNXXXVYELN 3 RPETAQG FVN + E N Sbjct: 249 RPETAQGIFVNFKRLLEFN 267
>gi|1711632|sp|Q10179|SYG_SCHPO PUTATIVE GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|1182050|emb|CAA93301.1| (Z69369) glycyl tRNA synthetase [Schizosaccharomyces pombe] Length = 652 Score = 122 bits (302), Expect = 3e-27 Identities = 75/180 (41%), Positives = 114/180 (62%), Gaps = 44/180 (24%) Query: 542 ETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLFEIESTILT 369 E +++KR F + SF IYGG+SGLYD GP G++L++ ++ ++R F + + E++ ++LT Sbjct: 16 EELMKKRFFFSPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEVDCSMLT 75 Query: 368 PYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXX-------------------X 246 P++VLK SGH+DKF D + D GE +RADH Sbjct: 76 PHEVLKTSGHVDKFADWMCKDPATGEIFRADHLVEEVLEARLKGDKEARGQNSNDQPEES 135 Query: 245 XXXXEIDKMIEKLECMSLEEIDKVVEDYK-ILSKXKN----------------------T 135 + K ++++ L+ DK VE+Y+ IL++ N Sbjct: 136 DDKKKRKKKVKEIRATRLD--DKTVEEYEFILAQIDNYDGDQLGELMKKYDIRNPATNGE 193 Query: 134 LSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQFVNXXXVYELN 3 L ++FNLMFET +GP Y RPETAQGQF+N + E N Sbjct: 194 LETPRQFNLMFETQIGPSGGLKGYLRPETAQGQFLNFSRLLEFN 237
>gi|2500998|sp|Q57681|SYG_METJA PROBABLE GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|2127942|pir||E64328 glycine--tRNA ligase (EC 6.1.1.14) - Methanococcus jannaschii >gi|1499005 (U67478) glycyl-tRNA synthetase (glyS) [Methanococcus jannaschii] Length = 577 Score = 120 bits (297), Expect = 1e-26 Identities = 70/174 (40%), Positives = 104/174 (59%), Gaps = 4/174 (2%) Query: 551 ERRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRD--IFCKDLFEIEST 378 E+ + ++R ++ SSF IYGG++G D GPLG LKN I+ FR+ I + +EIES Sbjct: 7 EKIMDLAKRRGYLWSSFEIYGGIAGFVDYGPLGCLLKNNIISKFREQYIIKEGFYEIESP 66 Query: 377 ILTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIE-KLEC 201 +TPY+VLKASGH+D F D ++ E +RADH I++ ++ E Sbjct: 67 TVTPYEVLKASGHVDNFTDPIVECKNCLESFRADH-------------LIEEFVDVDTEG 113 Query: 200 MSLEEIDKVVEDYKI-LSKXKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQFV 30 +L+E+D+++ + I K L + ++FNLMF T +GP K Y RPETAQG F+ Sbjct: 114 KTLKELDELIRKHNIRCPKCGGELGEVKKFNLMFVTSIGPGGKRTGYMRPETAQGIFI 171
>gi|3258043|dbj|BAA30726| (AP000006) 570aa long hypothetical glycyl-tRNA synthetase [Pyrococcus horikoshii] Length = 570 Score = 118 bits (294), Expect = 3e-26 Identities = 71/178 (39%), Positives = 103/178 (56%), Gaps = 3/178 (1%) Query: 560 NKAERRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCKD-LFEIE 384 +K E + ++R+R F SF IYGG G YD GPLG ++K +I R R+ F ++ FEIE Sbjct: 6 DKYEYLQDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFIREGFFEIE 65 Query: 383 STILTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIE-KL 207 + +TP QV ASGH++KF D ++ G +RADH I++ + + Sbjct: 66 TPDITPEQVFIASGHVEKFVDPVVECKKCGMRFRADH-------------LIEEFLGIDV 112 Query: 206 ECMSLEEIDKVVEDYKI-LSKXKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQFV 30 E S EE+ +++ ++ + + LS FNLMFET++GP K Y RPETAQG FV Sbjct: 113 EGKSAEEMSRIIREHGLKCPECGGELSDVFYFNLMFETYIGPYKDKKAYLRPETAQGIFV 172 Query: 29 N 27 N Sbjct: 173 N 173
>gi|3334352|sp|O27874|SYG_METTH PROBABLE GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|2622981 (AE000937) glycyl-tRNA synthetase [Methanobacterium thermoautotrophicum] Length = 565 Score = 110 bits (273), Expect = 8e-24 Identities = 66/174 (37%), Positives = 96/174 (54%), Gaps = 3/174 (1%) Query: 551 ERRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLFEIEST 378 ER T+ RKR F+ SSF IY GV+G D GPLG +LKN+I+ +R+ + + +EIES Sbjct: 7 ERTMTVARKRGFLWSSFEIYSGVAGFVDYGPLGATLKNKIMNRWREFYVVREGFYEIESP 66 Query: 377 ILTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECM 198 + P + LKASGH+D F D + + YRADH D +E + Sbjct: 67 TIMPEEALKASGHVDHFNDPMTQCKECMDVYRADHIIE------------DATGRDVEGL 114 Query: 197 SLEEIDKVVEDYKI-LSKXKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQFV 30 +E+ +++ D I + L+ +NLMF+T +G + K Y RPETAQG F+ Sbjct: 115 ENQELTEIISDEGIRCPRCGGHLTHVWSYNLMFQTLIGARGKKTGYLRPETAQGIFI 171
>gi|3242765 (AC005154) glycyl-tRNA synthetase; similar to protein A55314 (PID:g1082407) [Homo sapiens] Length = 245 Score = 106 bits (263), Expect = 1e-22 Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 2/92 (2%) Query: 548 RRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCKD--LFEIESTI 375 + E L++R F +F+IYGGVSGLYD GP+G +LKN I++ +R F ++ + EI+ T+ Sbjct: 123 KMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTM 182 Query: 374 LTPYQVLKASGHIDKFCDILLFDSVNGECYRADH 273 LTP VLK SGH+DKF D ++ D NGEC+RADH Sbjct: 183 LTPEPVLKTSGHVDKFADFMVKDVKNGECFRADH 216
>gi|3334354|sp|O29346|SYG_ARCFU PROBABLE GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|2649683 (AE001040) glycyl-tRNA synthetase (glyS) [Archaeoglobus fulgidus] Length = 570 Score = 92.1 bits (225), Expect = 3e-18 Identities = 58/170 (34%), Positives = 85/170 (49%), Gaps = 2/170 (1%) Query: 536 MLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC--KDLFEIESTILTPY 363 ML +R F+ SF IYGG++G D PLG +L+ +I ++R F + EI++ + Sbjct: 9 MLIRRGFLWQSFEIYGGMAGFIDYAPLGNNLRRKIENIWRKYFVINERAAEIDTPTIGIE 68 Query: 362 QVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECMSLEEI 183 +V ASGH F D+ + G YRADHY +D+ +E ++ Sbjct: 69 EVFIASGHATSFTDVAIECENCGRVYRADHYVKEKLGIE-----VDETVEAVK------- 116 Query: 182 DKVVEDYKILSKXKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQGQFVN 27 +V+E Y + + NLMF T +GP K Y RPETAQG FV+ Sbjct: 117 -EVMEVYDLKCECGGRFKDPAPMNLMFSTTIGPGKGKKGYLRPETAQGMFVD 167
>gi|2078043|emb|CAB08466| (Z95208) glyS [Mycobacterium tuberculosis] Length = 463 Score = 81.1 bits (197), Expect = 7e-15 Identities = 58/174 (33%), Positives = 87/174 (49%), Gaps = 6/174 (3%) Query: 536 MLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVF-RDIFC--KDLFEIESTILTP 366 + ++R F+ S IYGG +D GPLG LK I R + R + D+ I+S+I+ P Sbjct: 15 LAKRRGFVYPSGEIYGGTKSAWDYGPLGVELKENIKRQWWRSVVTGRDDVVGIDSSIILP 74 Query: 365 YQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECMSLEE 186 +V ASGH+D F D L+ + + YRADH +IE E Sbjct: 75 REVWVASGHVDVFHDPLVESLITHKRYRADH-----------------LIEAYEAKHGHP 117 Query: 185 IDKVVEDYKILSKXK-NTLSKSQRFNLMFETFVGP--KKKNXIYXRPETAQGQFVNXXXV 15 + D + + ++ + FN+M +T++GP ++ Y RPETAQG FVN V Sbjct: 118 PPNGLADIRDPETGEPGQWTQPREFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANV 177
>gi|2147427|pir||S58522 glycyl-tRNA synthetase - Thermus thermophilus Length = 506 Score = 78.4 bits (190), Expect = 4e-14 Identities = 59/186 (31%), Positives = 93/186 (49%), Gaps = 18/186 (9%) Query: 566 PMNKAERRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVF--RDIFCKDLF 393 P + + + ++R FI S IYGG+ G+YD GPLG LKN + + + R+++ +D Sbjct: 2 PASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDM 61 Query: 392 E-IESTILTPYQVLKASGHIDKFCDILLFDSVNGECYRADH-------------YXXXXX 255 E +++++LT VL SGH F D ++ + + + YR DH Y Sbjct: 62 EGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEV 121 Query: 254 XXXXXXXEIDKMIEKLECMSLEEIDKVVEDYKILSKXKNTLSKSQRFNLMFETFVGPKKK 75 + M++ E V D S + + FN+MF+ GP+ Sbjct: 122 EEENLHALVQAMMQAPERAGGAMTAAGVLD--PASGEPGDWTPPRYFNMMFQDLRGPRGG 179 Query: 74 NXI--YXRPETAQGQFVNXXXVYE 9 + Y RPETAQG FVN V + Sbjct: 180 RGLLAYLRPETAQGIFVNFKNVLD 203
>gi|2392169|pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus >gi|2392170|pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus Length = 505 Score = 76.9 bits (186), Expect = 1e-13 Identities = 58/176 (32%), Positives = 90/176 (50%), Gaps = 18/176 (10%) Query: 536 MLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVF--RDIFCKDLFE-IESTILTP 366 + ++R FI S IYGG+ G+YD GPLG LKN + + + R+++ +D E +++++LT Sbjct: 11 LCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTH 70 Query: 365 YQVLKASGHIDKFCDILLFDSVNGECYRADH-------------YXXXXXXXXXXXXEID 225 VL SGH F D ++ + + + YR DH Y + Sbjct: 71 RLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQ 130 Query: 224 KMIEKLECMSLEEIDKVVEDYKILSKXKNTLSKSQRFNLMFETFVGPKKKNXI--YXRPE 51 M++ E V D S + + FN+MF+ GP+ + Y RPE Sbjct: 131 AMMQAPERAGGAMTAAGVLD--PASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPE 188 Query: 50 TAQGQFVNXXXVYE 9 TAQG FVN V + Sbjct: 189 TAQGIFVNFKNVLD 202
>gi|2500997|sp|P75425|SYG_MYCPN GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|2146142|pir||S73808 glycine--tRNA ligase (EC 6.1.1.14) grs1 - Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1674173 (AE000047) Mycoplasma pneumoniae, glycyl-tRNA synthetase; similar to Swiss-Prot Accession Number P38088, from S. cerevisiae [Mycoplasma pneumoniae] Length = 449 Score = 76.9 bits (186), Expect = 1e-13 Identities = 53/176 (30%), Positives = 88/176 (49%), Gaps = 5/176 (2%) Query: 533 LRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCK---DLFEIESTILTPY 363 L++ F+ S +Y G++ +D GPLG LK QI + F K D+ I++ I+ Sbjct: 14 LKRYGFVFQSSELYNGLANSWDFGPLGAVLKQQIKTALYNFFIKNKRDVLLIDTPIILNE 73 Query: 362 QVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECMSLEEI 183 Q+ KASGH+ F D L+ +R DH +D+ I+ + +++ Sbjct: 74 QIWKASGHLANFTDALVDCKSCKLRFRVDH--------------LDEQIKSATQWNPKQV 119 Query: 182 DKVVEDYKILSKXKNTLSKSQRFNLMFETFVG--PKKKNXIYXRPETAQGQFVNXXXVYE 9 + + N S+ + FNL+F+T +G +K +Y RPETAQG F+N + + Sbjct: 120 N-------CPNCKANNWSEVRDFNLLFQTEIGVVNSEKRLVYLRPETAQGIFINFKQLLQ 172 Query: 8 L 6 L Sbjct: 173 L 173
>gi|2829475|sp|P56206|SYG_THETH GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) Length = 506 Score = 76.9 bits (186), Expect = 1e-13 Identities = 58/176 (32%), Positives = 90/176 (50%), Gaps = 18/176 (10%) Query: 536 MLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVF--RDIFCKDLFE-IESTILTP 366 + ++R FI S IYGG+ G+YD GPLG LKN + + + R+++ +D E +++++LT Sbjct: 12 LCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTH 71 Query: 365 YQVLKASGHIDKFCDILLFDSVNGECYRADH-------------YXXXXXXXXXXXXEID 225 VL SGH F D ++ + + + YR DH Y + Sbjct: 72 RLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQ 131 Query: 224 KMIEKLECMSLEEIDKVVEDYKILSKXKNTLSKSQRFNLMFETFVGPKKKNXI--YXRPE 51 M++ E V D S + + FN+MF+ GP+ + Y RPE Sbjct: 132 AMMQAPERAGGAMTAAGVLD--PASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPE 189 Query: 50 TAQGQFVNXXXVYE 9 TAQG FVN V + Sbjct: 190 TAQGIFVNFKNVLD 203
>gi|2688266 (AE001142) glycyl-tRNA synthetase (glyS) # [Borrelia burgdorferi] Length = 445 Score = 71.0 bits (171), Expect = 7e-12 Identities = 51/177 (28%), Positives = 81/177 (44%), Gaps = 5/177 (2%) Query: 539 TMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFC---KDLFEIESTILT 369 ++ +++ F+ S +YGG+SG +D GPLG LK I + + +++ ++S I Sbjct: 9 SLAKRKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMVYLHENIVGLDSAIFM 68 Query: 368 PYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECMSLE 189 ++ +ASGH+D F D ++ +RAD ID C Sbjct: 69 RPEIWRASGHVDGFSDSMVDCKDCKSRFRAD--------------FIDLSKNCPNC---- 110 Query: 188 EIDKVVEDYKILSKXKNTLSKSQRFNLMFETFVG--PKKKNXIYXRPETAQGQFVNXXXV 15 K N + + FNLMF+T +G + +Y RPETAQG FVN V Sbjct: 111 -------------KVGNNFTSPRSFNLMFKTHIGVVEDSSSEVYLRPETAQGIFVNFRNV 157 Query: 14 YE 9 + Sbjct: 158 LD 159
>gi|1351155|sp|P47493|SYG_MYCGE GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) >gi|1361523|pir||G64227 glycine--tRNA ligase (EC 6.1.1.14) - Mycoplasma genitalium (SGC3) >gi|3844849 (U39704) glycyl-tRNA synthetase [Mycoplasma genitalium] Length = 446 Score = 71.0 bits (171), Expect = 7e-12 Identities = 50/175 (28%), Positives = 79/175 (44%), Gaps = 5/175 (2%) Query: 533 LRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCK---DLFEIESTILTPY 363 L++ F+ S IY G++ +D GPLG LK QI + + F K D+ +E+ I+ Sbjct: 14 LKQHGFVFQSSEIYNGLNNSWDFGPLGAVLKQQIKQALYNFFIKNKADVLLVETPIILSE 73 Query: 362 QVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECMSLEEI 183 V KASGH+ F D L+ +C + + D K+ C + Sbjct: 74 LVWKASGHLANFVDTLV------DCKSCKYRFRVDQINAEIKAKKDWNSFKVNCPNCH-- 125 Query: 182 DKVVEDYKILSKXKNTLSKSQRFNLMFETFVG--PKKKNXIYXRPETAQGQFVNXXXVYE 9 S+ + FNL+F+T +G K ++ RPETAQG F+N + + Sbjct: 126 -------------NQNWSEVRDFNLLFQTEIGVVNNDKRLVFLRPETAQGSFINFKNILQ 172
>gi|3322974 (AE001241) glycyl-tRNA synthetase (glyS) [Treponema pallidum] Length = 462 Score = 70.2 bits (169), Expect = 1e-11 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 536 MLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVFRDIFCK---DLFEIESTILTP 366 + ++R F+ S IYGG G++D GP+G +LKN I + + + +++ IL Sbjct: 7 LCKRRGFVFPSSEIYGGQGGVWDYGPMGIALKNNIAHAWWQDMTRLHDHIVGLDAAILMH 66 Query: 365 YQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECMSLEE 186 V + SGH+D F D L+ +V +RAD Sbjct: 67 PNVWRTSGHVDHFSDPLVDCTVCKSRFRADQVAVPSAGGP-------------------- 106 Query: 185 IDKVVEDYKILSKXKNTLSKSQRFNLMFETFVGP--KKKNXIYXRPETAQGQFVNXXXVY 12 + L+ + FNLMF T +GP ++ + +Y RPETAQG +VN V Sbjct: 107 ----------CPQCGGALTGVRNFNLMFSTHMGPTDERASLLYLRPETAQGIYVNYKNVL 156 Query: 11 E 9 + Sbjct: 157 Q 157
>gi|2664208|emb|CAA10903| (AJ222643) Glycyl-tRNA synthetase [Thermus thermophilus] Length = 506 Score = 68.3 bits (164), Expect = 5e-11 Identities = 52/175 (29%), Positives = 88/175 (49%), Gaps = 16/175 (9%) Query: 566 PMNKAERRETMLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVF--RDIFCKDLF 393 P + + + ++R FI S IYGG+ G+YD GPLG LKN + + + R+++ +D Sbjct: 2 PASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDM 61 Query: 392 E-IESTILTPYQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMI 216 E +++++LT VL SGH F D ++ + + + YR DH + Sbjct: 62 EGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLTGPWRV 121 Query: 215 EKLECMSL--------EEIDKVVEDYKIL---SKXKNTLSKSQRFNLMFETFVGPKKKNX 69 E+ +L E + +L S + + FN+MF+ GP+ Sbjct: 122 EEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRG 181 Query: 68 I--YXRPETAQ 42 + Y RPETA+ Sbjct: 182 LLAYLRPETAR 192
>gi|4388929|pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Atp >gi|4388930|pdb|1B76|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Atp >gi|4388931|pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Glycyl-Adenylate >gi|4388932|pdb|1GGM|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Glycyl-Adenylate Length = 442 Score = 63.6 bits (152), Expect = 1e-09 Identities = 50/176 (28%), Positives = 76/176 (42%), Gaps = 5/176 (2%) Query: 536 MLRKRXFIASSFSIYGGVSGLYDLGPLGTSLKNQILRVF--RDIFCKDLFE-IESTILTP 366 + ++R FI S IYGG+ G+YD GPLG LKN + + + R+++ +D E +++++LT Sbjct: 11 LCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTH 70 Query: 365 YQVLKASGHIDKFCDILLFDSVNGECYRADHYXXXXXXXXXXXXEIDKMIEKLECMSLEE 186 VL SGH F D ++ D+ + Y Sbjct: 71 RLVLHYSGHEATFADPMV-DNAKARYWTPPRY---------------------------- 101 Query: 185 IDKVVEDYKILSKXKNTLSKSQRFNLMFETFVGPKKKNXI--YXRPETAQGQFVNXXXVY 12 FN+MF+ GP+ + Y RPETAQG FVN V Sbjct: 102 -----------------------FNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVL 138 Query: 11 E 9 + Sbjct: 139 D 139
>gi|2392770 (AC002534) similar to glycyl tRNA synthetase [Arabidopsis thaliana] Length = 291 Score = 40.2 bits (92), Expect = 0.014 Identities = 17/46 (36%), Positives = 34/46 (72%), Gaps = 2/46 (4%) Query: 449 SLKNQILRVFRDIFC--KDLFEIESTILTPYQVLKASGHIDKFCDILL 312 ++K+ +L +R F ++++E++ +TP VLKASGH+D+F D+++ Sbjct: 39 AVKSNVLSFWRQHFILKENMYEVDCPCVTPEVVLKASGHVDQFTDLMV 86
>gi|1169007|sp|Q03727|COMA_STRPN TRANSPORT ATP-BINDING PROTEIN COMA >gi|520738 (M36180) comA protein [Streptococcus pneumoniae] Length = 717 Score = 30.9 bits (68), Expect = 9.0 Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 176 VVEDYKILSKXKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQ 42 ++ED + K+ S+SQR+ + + FV KK+ Y R E+ Q Sbjct: 347 IIEDINGIETIKSLTSESQRYQKIDKEFVDYLKKSFTYSRAESQQ 391
>gi|98020|pir||A39203 comA protein - Streptococcus pneumoniae Length = 717 Score = 30.9 bits (68), Expect = 9.0 Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 176 VVEDYKILSKXKNTLSKSQRFNLMFETFVGPKKKNXIYXRPETAQ 42 ++ED + K+ S+SQR+ + + FV KK+ Y R E+ Q Sbjct: 347 IIEDINGIETIKSLTSESQRYQKIDKEFVDYLKKSFTYSRAESQQ 391 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 17, 1999 5:33 AM Number of letters in database: 113,023,754 Number of sequences in database: 369,800 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95588488 Number of Sequences: 369800 Number of extensions: 1580248 Number of successful extensions: 3284 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3203 Number of HSP's gapped (non-prelim): 38 length of query: 226 length of database: 113023754 effective HSP length: 53 effective length of query: 173 effective length of database: 93424354 effective search space: 16162413242 effective search space used: 16162413242 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 68 (30.9 bits)