BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-9F
         (784 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|135997|sp|P08096|TOP2_SCHPO DNA TOPOISOMERASE II >gi|68490|pi...   240  7e-63
gi|3393015|emb|CAA20107| (AL031174) dna topoisomerase ii [Schizo...   240  7e-63
gi|2330651|emb|CAA74891| (Y14559) topoisomerase II [Pisum sativum]    240  1e-62
gi|267150|sp|Q01320|TP2A_MOUSE DNA TOPOISOMERASE II, ALPHA >gi|9...   239  1e-62
gi|3122958|sp|O42130|TP2A_CHICK DNA TOPOISOMERASE II, ALPHA ISOZ...   239  2e-62
gi|2909391|emb|CAA76312| (Y16594) DNA topoisomerase II alpha [Cr...   238  3e-62
gi|2909393|emb|CAA76313| (Y16595) DNA topoisomerase II alpha [Cr...   238  3e-62
gi|1174741|sp|P41515|TP2A_CRIGR DNA TOPOISOMERASE II, ALPHA ISOZ...   238  3e-62
gi|292830 (J04088) DNA topoisomerase II (EC 5.99.1.3) [Homo sapi...   236  1e-61
gi|3915886|sp|P11388|TP2A_HUMAN DNA TOPOISOMERASE II, ALPHA ISOZYME   236  1e-61
gi|3869316|gb|AAC77388| (AF071747) topoisomerase II alpha [Homo ...   236  1e-61
gi|3122959|sp|O42131|TP2B_CHICK DNA TOPOISOMERASE II, BETA ISOZY...   236  2e-61
gi|3878527|emb|CAA88867| (Z49069) similar to DNA topoisomerase I...   234  5e-61
gi|2668414|dbj|BAA23778| (AB009387) topoisomersae II [Sus scrofa]     234  5e-61
gi|1174740|sp|P30182|TOP2_ARATH DNA TOPOISOMERASE II >gi|2129576...   233  1e-60
gi|4218221|emb|CAA09762| (AJ011741) topoisomerase II alpha [Homo...   233  1e-60
gi|37231|emb|CAA48197| (X68060) DNA topoisomerase II [Homo sapiens]   232  2e-60
gi|288567|emb|CAA78815| (Z15111) DNA topoisomerase II [Homo sapi...   232  2e-60
gi|418123|sp|Q02880|TP2B_HUMAN DNA TOPOISOMERASE II, BETA ISOZYM...   232  2e-60
gi|135995|sp|P15348|TOP2_DROME DNA TOPOISOMERASE II >gi|84930|pi...   232  2e-60
gi|3869382 (AF087160) DNA topoisomerase II beta [Homo sapiens]        232  2e-60
gi|3024753|sp|Q64399|TP2B_CRILO DNA TOPOISOMERASE II, BETA ISOZY...   232  2e-60
gi|3024754|sp|Q64511|TP2B_MOUSE DNA TOPOISOMERASE II, BETA ISOZY...   232  2e-60
gi|484370|pir||JN0598 DNA topoisomerase (ATP-hydrolyzing) (EC 5....   230  1e-59
gi|1174742|sp|P41516|TP2A_RAT DNA TOPOISOMERASE II, ALPHA >gi|58...   230  1e-59
gi|105857|pir||A40493 DNA topoisomerase (ATP-hydrolyzing) (EC 5....   227  8e-59
gi|3980316|emb|CAA55900| (X79345) DNA topoisomerase (ATP-hydroly...   226  1e-58
gi|730968|sp|P41001|TOP2_PLAFK DNA TOPOISOMERASE II                   226  1e-58
gi|2338552 (AF013277) topoisomerase II [Bombyx mori]                  225  2e-58
gi|3786306|dbj|BAA33955| (AB010644) TopoisomeraseII [Candida gla...   222  2e-57
gi|2501297|sp|P87078|TOP2_CANAL DNA TOPOISOMERASE II >gi|2113829...   219  2e-56
gi|1351262|sp|P06786|TOP2_YEAST DNA TOPOISOMERASE II >gi|2144547...   215  2e-55
gi|172998 (M13814) Saccharomyces cerevisiae topoisomerase II [Sa...   211  5e-54
gi|464906|sp|P34534|TOP2_CAEEL PROBABLE DNA TOPOISOMERASE II          210  7e-54
gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis eleg...   210  7e-54
gi|3876589|emb|CAB04227| (Z81521) similar to DNA topoisomerase I...   209  2e-53
gi|1834317|dbj|BAA11510| (D82024) DNA topoisomerase II [Dictyost...   197  7e-50
gi|3172113|dbj|BAA28664| (AB014886) typeII DNA topoisomerase [Em...   193  1e-48
gi|2447074 (U42580) PBCV-1 DNA topoisomerase II [Paramecium burs...   171  6e-42
gi|3876590|emb|CAB04228| (Z81521) similar to DNA topoisomerase I...   165  3e-40
gi|135994|sp|P27570|TOP2_CRIFA DNA TOPOISOMERASE II >gi|323027|p...   139  2e-32
gi|135998|sp|P12531|TOP2_TRYBB DNA TOPOISOMERASE II >gi|320898|p...   136  1e-31
gi|267151|sp|P30190|TOP2_TRYCR DNA TOPOISOMERASE II >gi|477245|p...   135  3e-31
gi|2944450 (AF051307) DNA topoisomerase II [Leishmania chagasi]       125  3e-28
gi|4234943 (AF098113) DNA topoisomerase II [Trypanosoma cruzi] >...   118  3e-26
gi|1280159 (U55856) similar to DNA topoisomerase II; most likely...   118  3e-26
gi|339810 (M27504) topoisomerase II [Homo sapiens]                    109  3e-23
gi|68493|pir||ISBPT4 DNA topoisomerase (ATP-hydrolyzing) (EC 5.9...    92  5e-18
gi|1351264|sp|P09176|TOPL_BPT4 DNA TOPOISOMERASE LARGE SUBUNIT (...    92  5e-18
gi|267149|sp|Q00942|TOP2_ASFB7 DNA TOPOISOMERASE II >gi|319869|p...    78  9e-14
gi|464905|sp|P34203|TOP2_ASFM2 DNA TOPOISOMERASE II >gi|321343|p...    77  1e-13
gi|262135|bbs|120969 type II DNA topoisomerase homolog [African ...    74  1e-12
gi|4154989 (AE001479) DNA GYRASE SUBUNIT B [Helicobacter pylori ...    68  6e-11
gi|2501294|sp|P55992|GYRB_HELPY DNA GYRASE SUBUNIT B >gi|2313611...    68  8e-11
gi|3861127|emb|CAA15027| (AJ235272) DNA GYRASE SUBUNIT B  (gyrB2...    65  7e-10
gi|462227|sp|P34031|GYRB_SPICI DNA GYRASE SUBUNIT B >gi|421668|p...    62  6e-09
gi|4099111 (U83665) topoisomerase II ParE [Mycoplasma arthritidis]     61  8e-09
gi|3695371 (AF093760) DNA gyrase subunit B [Campylobacter jejuni]      61  1e-08
gi|2338752 (AF017075) DNA gyrase subunit B [Borrelia burgdorferi]      60  2e-08
gi|1708093|sp|P50028|GYRB_MYCCA DNA GYRASE SUBUNIT B                   60  2e-08
gi|3915725|sp|P33769|GYRB_BORBU DNA GYRASE SUBUNIT B >gi|2688337...    60  2e-08
gi|1170146|sp|P43053|GYRB_MYCHO DNA GYRASE SUBUNIT B >gi|453419|...    60  2e-08
gi|1346242|sp|P47249|GYRB_MYCGE DNA GYRASE SUBUNIT B >gi|1361486...    59  3e-08
gi|4033400|sp|O87545|GYRB_TREDE DNA GYRASE SUBUNIT B >gi|3676691...    59  3e-08
gi|2827016 (AF008210) DNA gyrase subunit B [Buchnera aphidicola]       59  3e-08
gi|121890|sp|P22447|GYRB_MYCPN DNA GYRASE SUBUNIT B >gi|68492|pi...    59  4e-08
gi|4099106 (U83664) gyrase B [Mycoplasma arthritidis]                  59  4e-08
gi|2127614|pir||S62834 gyrase B - Mycoplasma pneumoniae (SGC3) (...    59  4e-08
gi|4376548|gb|AAD18424| (AE001612) DNA Gyrase Subunit B [Chlamyd...    59  5e-08
gi|121893|sp|P13364|GYRB_PSEPU DNA GYRASE SUBUNIT B >gi|94906|pi...    59  5e-08
gi|4033398|sp|O67137|GYRB_AQUAE DNA GYRASE SUBUNIT B >gi|2983522...    59  5e-08
gi|3510605 (AF044267) gyrase subunit B [Chlamydia trachomatis]         58  7e-08
gi|2501299|sp|P78016|PARE_MYCPN TOPOISOMERASE IV SUBUNIT B >gi|2...    58  7e-08
gi|3913790|sp|O08399|GYRB_TREPA DNA GYRASE SUBUNIT B >gi|2102700...    58  7e-08
gi|3328595 (AE001292) DNA Gyrase Subunit B [Chlamydia trachomatis]     58  7e-08
gi|2118337|pir||JC4960 DNA topoisomerase (ATP-hydrolyzing) (EC 5...    58  9e-08
gi|454038 (U04527) DNA gyrase b subunit [Borrelia burgdorferi]         58  9e-08
gi|3859564 (AF098862) DNA gyrase subunit B [Borrelia hermsii]          58  9e-08
gi|1170145|sp|P43701|GYRB_HAEIN DNA GYRASE SUBUNIT B >gi|1074019...    58  9e-08
gi|121887|sp|P05652|GYRB_BACSU DNA GYRASE SUBUNIT B >gi|80348|pi...    57  1e-07
gi|1352716|sp|P47445|PARE_MYCGE TOPOISOMERASE IV SUBUNIT B >gi|1...    57  2e-07
gi|4033396|sp|O50627|GYRB_BACS5 DNA GYRASE SUBUNIT B >gi|2760177...    57  2e-07
gi|4033401|sp|P94281|GYRB_BARBA DNA GYRASE SUBUNIT B >gi|1766064...    57  2e-07
gi|290547 (L10328) DNA gyrase, subunit B [Escherichia coli]            56  3e-07
gi|121888|sp|P06982|GYRB_ECOLI DNA GYRASE SUBUNIT B >gi|68491|pi...    56  3e-07
gi|1790134 (AE000447) DNA gyrase subunit B, type II topoisomeras...    56  3e-07
gi|2160009|dbj|BAA20341| (D87842) DNA gyrase subunit B [Escheric...    56  3e-07
gi|529464 (L35044) topoisomerase II subunit B [Mycoplasma gallis...    55  4e-07
gi|3212436|pdb|1AJ6|   Novobiocin-Resistant Mutant (R136h) Of Th...    55  4e-07
gi|2501295|sp|Q60008|GYRB_SALTY DNA GYRASE SUBUNIT B >gi|1546916...    55  6e-07
gi|1617217|emb|CAA69665| (Y08383) subunit B of DNA gyrase [Salmo...    55  6e-07
gi|121892|sp|P22840|GYRB_PROMI DNA GYRASE SUBUNIT B >gi|96641|pi...    55  6e-07
gi|1777317|dbj|BAA11084| (D67074) DNA topoisomerase IV GrlB subu...    55  7e-07
gi|1709584|sp|P50072|PARE_STAAU TOPOISOMERASE IV SUBUNIT B >gi|2...    54  1e-06
gi|1346241|sp|P47720|GYRB_MYCGA DNA GYRASE SUBUNIT B >gi|603237 ...    53  3e-06
gi|1346240|sp|P48197|GYRB_CAUCR DNA GYRASE SUBUNIT B >gi|1049326...    52  4e-06
gi|121891|sp|P22118|GYRB_NEIGO DNA GYRASE SUBUNIT B >gi|150257 (...    52  4e-06
gi|482597|pir||A49794 DNA topoisomerase (ATP-hydrolyzing) (EC 5....    52  4e-06
gi|121889|sp|P21558|GYRB_HALSQ DNA GYRASE SUBUNIT B >gi|99223|pi...    52  5e-06
gi|3980296|emb|CAA50726| (X71911) topoisomerase IIb [Homo sapiens]     52  6e-06
gi|538664|pir||C49347 DNA topoisomerase (ATP-hydrolyzing) (EC 5....    50  1e-05
gi|4033402|sp|P94604|GYRB_CLOAB DNA GYRASE SUBUNIT B >gi|1790875...    50  1e-05
gi|3513506 (AF036961) topoisomerase IV subunit [Mycoplasma hominis]    50  1e-05
gi|3128305 (AF010496) DNA gyrase subunit b [Rhodobacter capsulatus]    50  1e-05
gi|4033395|sp|O33367|GYRB_MYXXA DNA GYRASE SUBUNIT B >gi|2578422...    50  1e-05
gi|1490397|emb|CAA91553| (Z67740) DNA gyrase [Streptococcus pneu...    50  2e-05
gi|2501296|sp|P77966|GYRB_SYNY3 DNA GYRASE SUBUNIT B >gi|1652801...    50  2e-05
gi|392774 (U00592) DNA gyrase B subunit [Caulobacter crescentus]       50  2e-05
gi|1346245|sp|P48373|GYRB_STRPN DNA GYRASE SUBUNIT B >gi|1052804...    49  3e-05
gi|3914289|sp|Q59192|PARE_BACSU TOPOISOMERASE IV SUBUNIT B >gi|2...    49  4e-05
gi|1346244|sp|P20832|GYRB_STAAU DNA GYRASE SUBUNIT B >gi|538882|...    49  4e-05
gi|3914288|sp|Q59189|PARE_BORBU TOPOISOMERASE IV SUBUNIT B >gi|2...    49  4e-05
gi|153085 (M86227) DNA gyrase B subunit [Staphylococcus aureus]        48  6e-05
gi|629198|pir||S44198 DNA topoisomerase (ATP-hydrolyzing) (EC 5....    47  1e-04
gi|1708095|sp|P41514|GYRB_MYCTU DNA GYRASE SUBUNIT B >gi|1107468...    47  1e-04
gi|1708094|sp|P48355|GYRB_MYCSM DNA GYRASE SUBUNIT B >gi|1213062...    47  1e-04
gi|1226021|emb|CAA58884| (X84077) DNA topoisomerase (ATP-hydroly...    47  1e-04
gi|1321898|emb|CAA63253| (X92503) gyrB [Mycobacterium smegmatis]       47  1e-04
gi|3860790|emb|CAA14690| (AJ235271) DNA GYRASE SUBUNIT B  (gyrB1...    46  2e-04
gi|1078799|pir||S47661 topoisomerase II - Plasmodium falciparum        46  3e-04
gi|3550425 (AF085684) DNA gyrase B subunit [Methylovorus sp. str...    45  5e-04
gi|1405461|emb|CAA97606| (Z73234) GrlB [Bacillus subtilis] >gi|2...    45  6e-04
gi|3914290|sp|Q59961|PARE_STRPN TOPOISOMERASE IV SUBUNIT B >gi|1...    45  8e-04
gi|938029|dbj|BAA05969| (D28808) DNA gyrase subunit B [Mycoplasm...    43  0.002
gi|400731|sp|P31598|PARE_SALTY TOPOISOMERASE IV SUBUNIT B >gi|42...    42  0.006
gi|1708089|sp|P50074|GYBR_STRSH DNA GYRASE SUBUNIT B, NOVOBIOCIN...    42  0.006
gi|4176381|dbj|BAA37153| (AB003429) topoisomerase IV subunit [Ps...    42  0.006
gi|322319|pir||S29682 DNA gyrase B, novobiocin-resistant - Strep...    42  0.006
gi|3914277|sp|O54479|PARE_CAUCR TOPOISOMERASE IV SUBUNIT B >gi|2...    41  0.007
gi|1172018|sp|P43703|PARE_HAEIN TOPOISOMERASE IV SUBUNIT B >gi|1...    41  0.007
gi|1708090|sp|P50075|GYBS_STRSH DNA GYRASE SUBUNIT B, NOVOBIOCIN...    41  0.009
gi|96261|pir||B36075 parE protein - Escherichia coli >gi|147108 ...    41  0.012
gi|436027 (L27063) DNA gyrase [Streptomyces coelicolor] >gi|1093...    41  0.012
gi|464346|sp|P20083|PARE_ECOLI TOPOISOMERASE IV SUBUNIT B >gi|88...    41  0.012
gi|544466|sp|P35886|GYRB_STRCO DNA GYRASE SUBUNIT B                    41  0.012
gi|4033404|sp|Q59533|GYRB_MYCLE DNA GYRASE SUBUNIT B >gi|1262356...    40  0.021
gi|3036887|emb|CAA18520| (AL022374) putative DNA gyrase subunit ...    39  0.028
gi|2267074 (AF007282) gyrase B subunit [Pseudoalteromonas rubra]       35  0.71
gi|2267078 (AF007284) gyrase B subunit [Pseudoalteromonas undina]      35  0.71
gi|2649399 (AE001022) signal-transducing histidine kinase [Archa...    35  0.71
gi|2267070 (AF007280) gyrase B subunit [Pseudoalteromonas luteov...    35  0.71
gi|3758853|emb|CAB11138| (Z98551) predicted using hexExon; MAL3P...    34  0.93
gi|2267056 (AF007273) gyrase B subunit [Marinomonas communis]          34  0.93
gi|2267060 (AF007275) gyrase B subunit [Pseudoalteromonas aurantia]    34  0.93
gi|2267080 (AF007285) gyrase B subunit [Pseudoalteromonas peptid...    34  0.93
gi|2267062 (AF007276) gyrase B subunit [Pseudoalteromonas carrag...    34  1.2
gi|2267058 (AF007274) gyrase B subunit [Pseudoalteromonas atlant...    34  1.6
gi|2267066 (AF007278) gyrase B subunit [Pseudoalteromonas espeji...    34  1.6
gi|2267076 (AF007283) gyrase B subunit [Pseudoalteromonas halopl...    34  1.6
gi|232220|sp|P29435|GYRB_BUCAP DNA GYRASE SUBUNIT B >gi|551761 (...    34  1.6
gi|2267068 (AF007279) gyrase B subunit [Pseudoalteromonas halopl...    33  2.1
gi|2120436|pir||I40294 DNA topoisomerase (ATP-hydrolyzing) (EC 5...    33  2.1
gi|2196800 (AF005674) DNA gyrase beta-subunit [Shewanella putref...    33  2.1
gi|2267072 (AF007281) gyrase B subunit [Pseudoalteromonas nigrif...    33  2.7
gi|2196838 (AF005693) DNA gyrase beta-subunit [Shewanella hanedai]     33  2.7
gi|2353020 (AF014947) gyrase beta subunit [Shewanella frigidimar...    32  3.6
gi|2853303 (AF007287) gyrase B subunit [Vibrio parahaemolyticus]       32  3.6
gi|2196808 (AF005678) DNA gyrase beta-subunit [Shewanella putref...    32  4.7
gi|2196810 (AF005679) DNA gyrase beta-subunit [Shewanella putref...    32  4.7
gi|2196812 (AF005680) DNA gyrase beta-subunit [Shewanella putref...    32  4.7
gi|2353018 (AF014946) gyrase beta subunit [Shewanella gelidimarina]    32  4.7
gi|4262599|gb|AAD14723| (AF125956) similar to other C. elegans c...    32  4.7
gi|808838 (M23871) unknown protein [Saccharomyces cerevisiae]          32  4.7
gi|2267064 (AF007277) gyrase B subunit [Pseudoalteromonas citrea]      32  6.2
gi|2196790 (AF005669) DNA gyrase beta-subunit [Shewanella putref...    32  6.2
gi|2353022 (AF014948) gyrase beta subunit [Shewanella putrefaciens]    32  6.2
gi|2905602 (AF039057) gyrase subunit B [Shewanella putrefaciens]       32  6.2
gi|731615|sp|P38732|YHD9_YEAST HYPOTHETICAL 67.5 KD PROTEIN IN C...    31  8.1
gi|575306|emb|CAA80467| (Z22813) NisK [Lactococcus lactis]             31  8.1
gi|2196798 (AF005673) DNA gyrase beta-subunit [Shewanella putref...    31  8.1


>gi|135997|sp|P08096|TOP2_SCHPO DNA TOPOISOMERASE II >gi|68490|pir||ISZPT2 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - fission yeast (Schizosaccharomyces pombe) >gi|5121|emb|CAA27857| (X04326) TOP2 (aa 1-1431) [Schizosaccharomyces pombe] Length = 1431 Score = 240 bits (607), Expect = 7e-63 Identities = 115/180 (63%), Positives = 142/180 (78%), Gaps = 2/180 (1%) Query: 564 VEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSD--NKIVSKNITFVPGLYKIFDEI 391 V YQ+ TP EH+L RPDTYIGS+E M++ NK+ K +T+VPGLYKIFDEI Sbjct: 20 VSTQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEI 79 Query: 390 IVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTS 211 IVNAADNK+RD M+ +KV +D + VIS+YNNG+GIP++IH KEKIY+PELIFG LLTS Sbjct: 80 IVNAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTS 139 Query: 210 SNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKN 31 SNYDD++KKVTGGRNGYGAKLCNIFS EFVVET DK+ Y Q + NMS++ +PVI + Sbjct: 140 SNYDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITS 199 Query: 30 MK 25 +K Sbjct: 200 LK 201
>gi|3393015|emb|CAA20107| (AL031174) dna topoisomerase ii [Schizosaccharomyces pombe] Length = 1485 Score = 240 bits (607), Expect = 7e-63 Identities = 115/180 (63%), Positives = 142/180 (78%), Gaps = 2/180 (1%) Query: 564 VEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSD--NKIVSKNITFVPGLYKIFDEI 391 V YQ+ TP EH+L RPDTYIGS+E M++ NK+ K +T+VPGLYKIFDEI Sbjct: 74 VSTQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEI 133 Query: 390 IVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTS 211 IVNAADNK+RD M+ +KV +D + VIS+YNNG+GIP++IH KEKIY+PELIFG LLTS Sbjct: 134 IVNAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTS 193 Query: 210 SNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKN 31 SNYDD++KKVTGGRNGYGAKLCNIFS EFVVET DK+ Y Q + NMS++ +PVI + Sbjct: 194 SNYDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITS 253 Query: 30 MK 25 +K Sbjct: 254 LK 255
>gi|2330651|emb|CAA74891| (Y14559) topoisomerase II [Pisum sativum] Length = 1462 Score = 240 bits (605), Expect = 1e-62 Identities = 110/182 (60%), Positives = 143/182 (78%) Query: 570 KTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEI 391 KT+EE+YQKKT +EHILLRPDTY+GS+E +N+++ ++++V + +++VPGLYKIFDEI Sbjct: 17 KTIEEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVYENDEMVHRAVSYVPGLYKIFDEI 76 Query: 390 IVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTS 211 +VNAADNK RD M +KV ID + +SVYNNG+G+PV+IH +EK+YVPELIFG LLTS Sbjct: 77 LVNAADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIFGHLLTS 136 Query: 210 SNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKN 31 SNYDD+ KK TGGRNGYGAKL NIFS EF++ET D + Y Q F+ NM + +PVI Sbjct: 137 SNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGRRLKKYKQVFSNNMGTKCEPVITK 196 Query: 30 MK 25 K Sbjct: 197 CK 198
>gi|267150|sp|Q01320|TP2A_MOUSE DNA TOPOISOMERASE II, ALPHA >gi|90458|pir||JS0703 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - mouse >gi|220616|dbj|BAA02076| (D12513) DNA topoisomerase II [Mus musculus] Length = 1528 Score = 239 bits (604), Expect = 1e-62 Identities = 117/182 (64%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ ++E +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 24 KKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 83 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N VIS++NNG+GIPV H EKIYVP LIFGQ Sbjct: 84 FDEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIFGQ 143 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET + K + Q + NM + D Sbjct: 144 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASRAYKKMFKQTWMDNMGRAGDM 203 Query: 42 VIK 34 +K Sbjct: 204 ELK 206
>gi|3122958|sp|O42130|TP2A_CHICK DNA TOPOISOMERASE II, ALPHA ISOZYME >gi|2463527|dbj|BAA22539| (AB007445) DNA topoisomeraseII_alpha [Gallus gallus] Length = 1552 Score = 239 bits (603), Expect = 2e-62 Identities = 117/183 (63%), Positives = 145/183 (78%), Gaps = 1/183 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 +K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ +++TFVPGLYKI Sbjct: 26 QKRLSVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVGLNCRDVTFVPGLYKI 85 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD MSCIKV ID +N ISV+NNG+GIPV H EK+YVP LIFGQ Sbjct: 86 FDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQ 145 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q +T NM K + Sbjct: 146 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEM 205 Query: 42 VIKN 31 +K+ Sbjct: 206 TLKH 209
>gi|2909391|emb|CAA76312| (Y16594) DNA topoisomerase II alpha [Cricetulus longicaudatus] Length = 1526 Score = 238 bits (602), Expect = 3e-62 Identities = 116/182 (63%), Positives = 143/182 (77%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ ++E +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 24 KKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 83 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 84 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 143 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS F VET K+ K + Q + NM + D Sbjct: 144 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDM 203 Query: 42 VIK 34 +K Sbjct: 204 ELK 206
>gi|2909393|emb|CAA76313| (Y16595) DNA topoisomerase II alpha [Cricetulus longicaudatus] Length = 1526 Score = 238 bits (602), Expect = 3e-62 Identities = 116/182 (63%), Positives = 143/182 (77%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ ++E +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 24 KKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 83 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 84 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 143 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS F VET K+ K + Q + NM + D Sbjct: 144 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDM 203 Query: 42 VIK 34 +K Sbjct: 204 ELK 206
>gi|1174741|sp|P41515|TP2A_CRIGR DNA TOPOISOMERASE II, ALPHA ISOZYME >gi|346624|pir||A44406 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Chinese hamster >gi|191218 (L04607) DNA topoisomerase II [Cricetulus griseus] Length = 1526 Score = 238 bits (602), Expect = 3e-62 Identities = 116/182 (63%), Positives = 143/182 (77%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ ++E +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 24 KKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 83 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 84 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 143 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS F VET K+ K + Q + NM + D Sbjct: 144 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDM 203 Query: 42 VIK 34 +K Sbjct: 204 ELK 206
>gi|292830 (J04088) DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens] >gi|4507633|ref|NP_001058.1|pTOP2A| topoisomerase (DNA) II alpha (170kD) Length = 1531 Score = 236 bits (597), Expect = 1e-61 Identities = 115/182 (63%), Positives = 144/182 (78%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 25 KKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 84 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 85 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 144 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q + NM + + Sbjct: 145 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEM 204 Query: 42 VIK 34 +K Sbjct: 205 ELK 207
>gi|3915886|sp|P11388|TP2A_HUMAN DNA TOPOISOMERASE II, ALPHA ISOZYME Length = 1531 Score = 236 bits (597), Expect = 1e-61 Identities = 115/182 (63%), Positives = 144/182 (78%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 25 KKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 84 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 85 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 144 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q + NM + + Sbjct: 145 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEM 204 Query: 42 VIK 34 +K Sbjct: 205 ELK 207
>gi|3869316|gb|AAC77388| (AF071747) topoisomerase II alpha [Homo sapiens] Length = 1531 Score = 236 bits (597), Expect = 1e-61 Identities = 115/182 (63%), Positives = 144/182 (78%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 25 KKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 84 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 85 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 144 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q + NM + + Sbjct: 145 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEM 204 Query: 42 VIK 34 +K Sbjct: 205 ELK 207
>gi|3122959|sp|O42131|TP2B_CHICK DNA TOPOISOMERASE II, BETA ISOZYME >gi|2463529|dbj|BAA22540| (AB007446) DNA topoisomeraseII_beta [Gallus gallus] Length = 1627 Score = 236 bits (595), Expect = 2e-61 Identities = 115/184 (62%), Positives = 145/184 (78%), Gaps = 1/184 (0%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKIF 400 K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKIF Sbjct: 52 KKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIF 111 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 DEI+VNAADNK RD M+CIK+ ID ++ +IS++NNG+GIPV H EK+YVP LIFGQL Sbjct: 112 DEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQL 171 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 LTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K + Q + NM K +P Sbjct: 172 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPK 231 Query: 39 IKNMK 25 IK+ + Sbjct: 232 IKHFE 236
>gi|3878527|emb|CAA88867| (Z49069) similar to DNA topoisomerase II; cDNA EST EMBL:D35600 comes from this gene; cDNA EST EMBL:D76143 comes from this gene; cDNA EST EMBL:D74849 comes from this gene; cDNA EST EMBL:D76369 comes from this gene; cDNA EST EMBL... >gi|3881920|emb|CAA94177| (Z70213) similar to DNA topoisomerase II; cDNA EST EMBL:D35600 comes from this gene; cDNA EST EMBL:D76143 comes from this gene; cDNA EST EMBL:D74849 comes from this gene; cDNA EST EMBL:D76369 comes from this gene; cDNA EST EMBL... Length = 1520 Score = 234 bits (591), Expect = 5e-61 Identities = 114/185 (61%), Positives = 146/185 (78%), Gaps = 3/185 (1%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKN---MYILSDNKIVSKNITFVPGLYK 406 KQ +E++YQKK+ +EHILLRPDTYIGSVE EK +Y + ++K+ ++I++VPGLYK Sbjct: 59 KQMAIEDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISYVPGLYK 118 Query: 405 IFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFG 226 I+DEI+VNAADNK RD KM+ IK+ I+++ ISVYNNG+GIPV H EK+YVPELIFG Sbjct: 119 IYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYVPELIFG 178 Query: 225 QLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKRED 46 LLTSSNY+DDEKKVTGGRNGYGAKLCNIFS +F +ET + K + Q + KNM++ E+ Sbjct: 179 TLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSRDYKSAFKQTWIKNMTRDEE 238 Query: 45 PVIKNMKD 22 P I D Sbjct: 239 PKIVKSTD 246
>gi|2668414|dbj|BAA23778| (AB009387) topoisomersae II [Sus scrofa] Length = 1533 Score = 234 bits (591), Expect = 5e-61 Identities = 113/182 (62%), Positives = 144/182 (79%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ ++E +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 25 KKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDIGINYREVTFVPGLYKI 84 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 85 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 144 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDD+EKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q + NM + + Sbjct: 145 LLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEM 204 Query: 42 VIK 34 +K Sbjct: 205 ELK 207
>gi|1174740|sp|P30182|TOP2_ARATH DNA TOPOISOMERASE II >gi|2129576|pir||S53599 DNA topoisomerase II - Arabidopsis thaliana >gi|474890 (L21015) topoisomerase II [Arabidopsis thaliana] Length = 1473 Score = 233 bits (587), Expect = 1e-60 Identities = 109/178 (61%), Positives = 140/178 (78%) Query: 570 KTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEI 391 KT+EE+YQKK+ +EHILLRPDTYIGS+E + +++ +++V + +T+VPGLYKIFDEI Sbjct: 29 KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEI 88 Query: 390 IVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTS 211 +VNAADNK RD+KM ++V ID + +ISV N+G G+PV+IH +E IYVPE+IFG LLTS Sbjct: 89 LVNAADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTS 148 Query: 210 SNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVI 37 SNYDD+ KK TGGRNGYGAKL NIFS EF++ET D K Y Q F NM K+ +PVI Sbjct: 149 SNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVI 206
>gi|4218221|emb|CAA09762| (AJ011741) topoisomerase II alpha [Homo sapiens] Length = 1531 Score = 233 bits (587), Expect = 1e-60 Identities = 113/182 (62%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 25 KKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 84 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V ID +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 85 FDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 144 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNY DDEKKVTGGRNGYGAKLCNIFS +F V+T ++ K + Q + NM + + Sbjct: 145 LLTSSNYHDDEKKVTGGRNGYGAKLCNIFSTKFTVQTASREYKKMFKQTWMDNMGRAGEM 204 Query: 42 VIK 34 +K Sbjct: 205 ELK 207
>gi|37231|emb|CAA48197| (X68060) DNA topoisomerase II [Homo sapiens] Length = 1621 Score = 232 bits (586), Expect = 2e-60 Identities = 115/182 (63%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKIF 400 K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKIF Sbjct: 42 KKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIF 101 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 DEI+VNAADNK RD M+CIKV ID ++ +IS++NNG+GIPV H EK+YVP LIFGQL Sbjct: 102 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQL 161 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 LTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K + Q + NM K + Sbjct: 162 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAK 221 Query: 39 IKN 31 IK+ Sbjct: 222 IKH 224
>gi|288567|emb|CAA78815| (Z15111) DNA topoisomerase II [Homo sapiens] Length = 400 Score = 232 bits (586), Expect = 2e-60 Identities = 115/182 (63%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKIF 400 K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKIF Sbjct: 42 KKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIF 101 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 DEI+VNAADNK RD M+CIKV ID ++ +IS++NNG+GIPV H EK+YVP LIFGQL Sbjct: 102 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQL 161 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 LTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K + Q + NM K + Sbjct: 162 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAK 221 Query: 39 IKN 31 IK+ Sbjct: 222 IKH 224
>gi|418123|sp|Q02880|TP2B_HUMAN DNA TOPOISOMERASE II, BETA ISOZYME >gi|2118336|pir||A39242 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) beta, splice form 2 - human Length = 1626 Score = 232 bits (586), Expect = 2e-60 Identities = 115/182 (63%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKIF 400 K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKIF Sbjct: 47 KKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIF 106 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 DEI+VNAADNK RD M+CIKV ID ++ +IS++NNG+GIPV H EK+YVP LIFGQL Sbjct: 107 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQL 166 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 LTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K + Q + NM K + Sbjct: 167 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAK 226 Query: 39 IKN 31 IK+ Sbjct: 227 IKH 229
>gi|135995|sp|P15348|TOP2_DROME DNA TOPOISOMERASE II >gi|84930|pir||S02160 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - fruit fly (Drosophila melanogaster) >gi|8711|emb|CAA43523| (X61209) DNA topoisomerase type II [Drosophila melanogaster] Length = 1447 Score = 232 bits (586), Expect = 2e-60 Identities = 111/182 (60%), Positives = 144/182 (78%), Gaps = 2/182 (1%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYIL--SDNKIVSKNITFVPGLYKI 403 K ++E++YQKK+ +EHILLRPD+YIGSVE ++ M++ S N++V K I+FVPGLYKI Sbjct: 6 KALSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKI 65 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD M+ IK+DID + ++SV+NNG+GIPV +H ++K+YVP +IFG Sbjct: 66 FDEILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKEQKMYVPTMIFGH 125 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNY+DDEKKVTGGRNGYGAKLCNIFS F VET ++ K + Q + NM K D Sbjct: 126 LLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGNNMGKASDV 185 Query: 42 VIKN 31 IK+ Sbjct: 186 QIKD 189
>gi|3869382 (AF087160) DNA topoisomerase II beta [Homo sapiens] Length = 1598 Score = 232 bits (586), Expect = 2e-60 Identities = 115/182 (63%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKIF 400 K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKIF Sbjct: 19 KKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIF 78 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 DEI+VNAADNK RD M+CIKV ID ++ +IS++NNG+GIPV H EK+YVP LIFGQL Sbjct: 79 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQL 138 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 LTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K + Q + NM K + Sbjct: 139 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAK 198 Query: 39 IKN 31 IK+ Sbjct: 199 IKH 201
>gi|3024753|sp|Q64399|TP2B_CRILO DNA TOPOISOMERASE II, BETA ISOZYME >gi|1085488|pir||S54154 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - long-tailed hamster >gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta - Chinese hamster >gi|790988|emb|CAA60173| (X86455) DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus] Length = 1612 Score = 232 bits (586), Expect = 2e-60 Identities = 115/182 (63%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKIF 400 K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKIF Sbjct: 35 KKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIF 94 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 DEI+VNAADNK RD M+CIKV ID ++ +IS++NNG+GIPV H EK+YVP LIFGQL Sbjct: 95 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQL 154 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 LTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K + Q + NM K + Sbjct: 155 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAK 214 Query: 39 IKN 31 IK+ Sbjct: 215 IKH 217
>gi|3024754|sp|Q64511|TP2B_MOUSE DNA TOPOISOMERASE II, BETA ISOZYME >gi|1066004|dbj|BAA07236| (D38046) typr II DNA topoisomerase beta isoform [Mus musculus] Length = 1612 Score = 232 bits (586), Expect = 2e-60 Identities = 115/182 (63%), Positives = 143/182 (78%), Gaps = 1/182 (0%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKIF 400 K+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKIF Sbjct: 35 KKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIF 94 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 DEI+VNAADNK RD M+CIKV ID ++ +IS++NNG+GIPV H EK+YVP LIFGQL Sbjct: 95 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQL 154 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 LTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K + Q + NM K + Sbjct: 155 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAK 214 Query: 39 IKN 31 IK+ Sbjct: 215 IKH 217
>gi|484370|pir||JN0598 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - rat >gi|57964|emb|CAA79611| (Z19552) DNA topoisomerase II [Rattus norvegicus] Length = 1526 Score = 230 bits (580), Expect = 1e-59 Identities = 114/182 (62%), Positives = 143/182 (77%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 24 KKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 83 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V + +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 84 FDEILVNAADNKQRDPKMSCIRVTM-MRNNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 142 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q + NM + D Sbjct: 143 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDM 202 Query: 42 VIK 34 +K Sbjct: 203 ELK 205
>gi|1174742|sp|P41516|TP2A_RAT DNA TOPOISOMERASE II, ALPHA >gi|587515|emb|CAA86496| (Z46372) DNA topoisomerase II [Rattus norvegicus] Length = 1526 Score = 230 bits (580), Expect = 1e-59 Identities = 114/182 (62%), Positives = 143/182 (77%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 24 KKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 83 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V + +N +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 84 FDEILVNAADNKQRDPKMSCIRVTM-MRNNLISIWNNGKGIPVVEHKVEKMYVPALIFGQ 142 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q + NM + D Sbjct: 143 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDM 202 Query: 42 VIK 34 +K Sbjct: 203 ELK 205
>gi|105857|pir||A40493 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) alpha - human Length = 1530 Score = 227 bits (572), Expect = 8e-59 Identities = 113/182 (62%), Positives = 142/182 (77%), Gaps = 1/182 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVS-KNITFVPGLYKI 403 KK+ +VE +YQKKT +EHILLRPDTYIGSVE + M++ ++ ++ + +TFVPGLYKI Sbjct: 25 KKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKI 84 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 FDEI+VNAADNK RD KMSCI+V + K +IS++NNG+GIPV H EK+YVP LIFGQ Sbjct: 85 FDEILVNAADNKQRDPKMSCIRVTMIRKQ-LISIWNNGKGIPVVEHKVEKMYVPALIFGQ 143 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET ++ K + Q + NM + + Sbjct: 144 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEM 203 Query: 42 VIK 34 +K Sbjct: 204 ELK 206
>gi|3980316|emb|CAA55900| (X79345) DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum] Length = 1397 Score = 226 bits (570), Expect = 1e-58 Identities = 113/184 (61%), Positives = 145/184 (78%), Gaps = 7/184 (3%) Query: 582 MKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSD--NKIVSKNITFVPGLY 409 M K KT+EE YQKK+ IEHILLRPDTYIGSVE + +++ + N++V KNIT+VPGLY Sbjct: 1 MAKNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLY 60 Query: 408 KIFDEIIVNAADNKIRDSK-----MSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYV 244 KIFDEIIVNAAD K R+ + M+CIK++I+++N ISVYN+GEGIPV IH + IYV Sbjct: 61 KIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYV 120 Query: 243 PELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKN 64 P +IFG+LLTS NYDD E ++TGGRNG+GAKL NIFS+EF+V+ D K + ++ N Sbjct: 121 PHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKMTWSDN 180 Query: 63 MSKREDPVIKN 31 MSK +P IKN Sbjct: 181 MSKFSEPHIKN 191
>gi|730968|sp|P41001|TOP2_PLAFK DNA TOPOISOMERASE II Length = 1398 Score = 226 bits (570), Expect = 1e-58 Identities = 113/184 (61%), Positives = 145/184 (78%), Gaps = 7/184 (3%) Query: 582 MKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSD--NKIVSKNITFVPGLY 409 M K KT+EE YQKK+ IEHILLRPDTYIGSVE + +++ + N++V KNIT+VPGLY Sbjct: 1 MAKNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLY 60 Query: 408 KIFDEIIVNAADNKIRDSK-----MSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYV 244 KIFDEIIVNAAD K R+ + M+CIK++I+++N ISVYN+GEGIPV IH + IYV Sbjct: 61 KIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYV 120 Query: 243 PELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKN 64 P +IFG+LLTS NYDD E ++TGGRNG+GAKL NIFS+EF+V+ D K + ++ N Sbjct: 121 PHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKMTWSDN 180 Query: 63 MSKREDPVIKN 31 MSK +P IKN Sbjct: 181 MSKFSEPHIKN 191
>gi|2338552 (AF013277) topoisomerase II [Bombyx mori] Length = 1547 Score = 225 bits (568), Expect = 2e-58 Identities = 113/196 (57%), Positives = 149/196 (75%), Gaps = 7/196 (3%) Query: 588 PSMKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVP- 418 P+ ++ +E++YQKK+ +EHILLRPDTYIGSVE + M++ K ++ K +T VP Sbjct: 24 PAKGQKGAIEKIYQKKSQLEHILLRPDTYIGSVERATETMWVYDKVKECMMQKELTSVPD 83 Query: 417 ----GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKI 250 GLYKI+DEI+VNAADNK RD KM IK+DI+++ ISVYNNG GIPV +H EK+ Sbjct: 84 CSFPGLYKIYDEILVNAADNKQRDPKMDVIKIDINQETNTISVYNNGSGIPVVMHKDEKM 143 Query: 249 YVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFT 70 YVP +IFG LLTSSNY+D+E+KVTGGRNGYGAKLCNIFS +F VET K+ K ++ Q + Sbjct: 144 YVPTMIFGHLLTSSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTVETASKQYKKHFKQTWG 203 Query: 69 KNMSKREDPVIKNMKDAGVKEEF 1 NM+K +P I KD+G ++F Sbjct: 204 SNMTKASEPKI---KDSGKDDDF 223
>gi|3786306|dbj|BAA33955| (AB010644) TopoisomeraseII [Candida glabrata] Length = 1406 Score = 222 bits (561), Expect = 2e-57 Identities = 110/186 (59%), Positives = 134/186 (71%), Gaps = 2/186 (1%) Query: 582 MKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVPGLY 409 M + KT E YQK + +EHIL RPDTYIGSVE +E+ +I + ++ K + VPGL+ Sbjct: 1 MSEPKTASERYQKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNIVPGLF 60 Query: 408 KIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIF 229 KIFDEI+VNAADNK+RD M I V I+ + I V N+G+GIP++IH KEKIY+PELIF Sbjct: 61 KIFDEILVNAADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEKEKIYIPELIF 120 Query: 228 GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKRE 49 G LLTSSNYDDDEKKVTGGRNGYGAKLCNIFS EF +ET D K Y Q + NM+ Sbjct: 121 GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNGRKYVQTWENNMNVCH 180 Query: 48 DPVIKNMK 25 P I + K Sbjct: 181 PPKITSYK 188
>gi|2501297|sp|P87078|TOP2_CANAL DNA TOPOISOMERASE II >gi|2113829|emb|CAA71405| (Y10377) topoisomerase II [Candida albicans] Length = 1461 Score = 219 bits (552), Expect = 2e-56 Identities = 109/187 (58%), Positives = 132/187 (70%), Gaps = 2/187 (1%) Query: 585 SMKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILS--DNKIVSKNITFVPGL 412 S K E YQK + +EHIL RPDTYIGSVE + M+ +V K +T VPGL Sbjct: 51 STPKPTNASETYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGL 110 Query: 411 YKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELI 232 YKIFDEI+VNAADNKIRD M I+V ID +N +I V N+G+GIP+++H KE +Y+PELI Sbjct: 111 YKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPELI 170 Query: 231 FGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKR 52 FG LLTSSNYDDD+KKVTGGRNG+GAKLCNIFS +F VET D Y Q +T NMS Sbjct: 171 FGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNNMSNV 230 Query: 51 EDPVIKNMK 25 P I ++ Sbjct: 231 SKPKITTLR 239
>gi|1351262|sp|P06786|TOP2_YEAST DNA TOPOISOMERASE II >gi|2144547|pir||ISBYT2 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - yeast (Saccharomyces cerevisiae) >gi|887623|emb|CAA61422| (X89016) ORF N2244 [Saccharomyces cerevisiae] >gi|1301989|emb|CAA95964| (Z71364) ORF YNL088w [Saccharomyces cerevisiae] Length = 1428 Score = 215 bits (543), Expect = 2e-55 Identities = 106/181 (58%), Positives = 133/181 (72%), Gaps = 2/181 (1%) Query: 567 TVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVPGLYKIFDE 394 + + YQK + +EHIL RPDTYIGSVE +E+ +I + ++ KN+T VPGL+KIFDE Sbjct: 7 SASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDE 66 Query: 393 IIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLT 214 I+VNAADNK+RD M I V+I + I V N+G+GIP++IH KE IY+PE+IFG LLT Sbjct: 67 ILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 126 Query: 213 SSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIK 34 SSNYDDDEKKVTGGRNGYGAKLCNIFS EF++ET D Y Q++ NMS P I Sbjct: 127 SSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKIT 186 Query: 33 NMK 25 + K Sbjct: 187 SYK 189
>gi|172998 (M13814) Saccharomyces cerevisiae topoisomerase II [Saccharomyces cerevisiae] Length = 1429 Score = 211 bits (531), Expect = 5e-54 Identities = 106/181 (58%), Positives = 133/181 (72%), Gaps = 3/181 (1%) Query: 567 TVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVPGLYKIFDE 394 + + YQK + +EHIL RPDTYIGSVE +E+ +I + ++ KN+T VPGL+KIFDE Sbjct: 7 SASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDE 66 Query: 393 IIVNAADN-KIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLL 217 I+VNAADN K+RD M I V+I + I V N+G+GIP++IH KE IY+PE+IFG LL Sbjct: 67 ILVNAADNNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLL 126 Query: 216 TSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVI 37 TSSNYDDDEKKVTGGRNGYGAKLCNIFS EF++ET D Y Q++ NMS P I Sbjct: 127 TSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKI 186 Query: 36 KNMK 25 + K Sbjct: 187 TSYK 190
>gi|464906|sp|P34534|TOP2_CAEEL PROBABLE DNA TOPOISOMERASE II Length = 1198 Score = 210 bits (530), Expect = 7e-54 Identities = 103/182 (56%), Positives = 133/182 (72%), Gaps = 3/182 (1%) Query: 552 YQKKTPIEHILLRPDTYIGSVECEEKNMYILSDN---KIVSKNITFVPGLYKIFDEIIVN 382 Y+KK+P EH+LLRPDTYIG V E + L D+ K+++K +T+ PGL KIFDEI+VN Sbjct: 63 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 122 Query: 381 AADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNY 202 AADNK RDS M+ ++V +D + ISV+NNG G+PV+IH E IYVP L+FG L TSSNY Sbjct: 123 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNY 182 Query: 201 DDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKD 22 DD E K GGRNGYGAKLCNIFS+EF+VETVD + K + Q++ NM K + + + D Sbjct: 183 DDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILD 242 Query: 21 AGVKE 7 VK+ Sbjct: 243 ETVKD 247
>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans >gi|156413 (L07144) DNA topoisomerase II [Caenorhabditis elegans] Length = 2434 Score = 210 bits (530), Expect = 7e-54 Identities = 103/182 (56%), Positives = 133/182 (72%), Gaps = 3/182 (1%) Query: 552 YQKKTPIEHILLRPDTYIGSVECEEKNMYILSDN---KIVSKNITFVPGLYKIFDEIIVN 382 Y+KK+P EH+LLRPDTYIG V E + L D+ K+++K +T+ PGL KIFDEI+VN Sbjct: 1299 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 1358 Query: 381 AADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNY 202 AADNK RDS M+ ++V +D + ISV+NNG G+PV+IH E IYVP L+FG L TSSNY Sbjct: 1359 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNY 1418 Query: 201 DDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKD 22 DD E K GGRNGYGAKLCNIFS+EF+VETVD + K + Q++ NM K + + + D Sbjct: 1419 DDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILD 1478 Query: 21 AGVKE 7 VK+ Sbjct: 1479 ETVKD 1483
>gi|3876589|emb|CAB04227| (Z81521) similar to DNA topoisomerase II (N-terminal region) [Caenorhabditis elegans] Length = 654 Score = 209 bits (526), Expect = 2e-53 Identities = 101/180 (56%), Positives = 137/180 (76%), Gaps = 3/180 (1%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKN---MYILSDNKIVSKNITFVPGLYK 406 KQ + ++YQKK+ +EHILLRPD+YIGS+E EK +Y + D+K+ ++I++VPGL+K Sbjct: 57 KQMAIVDIYQKKSQLEHILLRPDSYIGSIEHTEKKPMWVYNMEDSKLEQRDISYVPGLFK 116 Query: 405 IFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFG 226 I+DEI+VNAADNK RD KM+ I+V I++ ISVYNNG+GIPV H EK++VPELIFG Sbjct: 117 IYDEILVNAADNKQRDRKMNTIRVTINKAKNEISVYNNGKGIPVTQHKVEKVFVPELIFG 176 Query: 225 QLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKRED 46 LLTSSN+ ++K + GGRNGYGAKLCNIFS +F ET + K + Q + NM++ E+ Sbjct: 177 SLLTSSNFVGNQKAMIGGRNGYGAKLCNIFSTKFTCETSSRVYKSAFKQTWINNMTRDEE 236 Query: 45 PVI 37 P I Sbjct: 237 PTI 239
>gi|1834317|dbj|BAA11510| (D82024) DNA topoisomerase II [Dictyostelium discoideum] Length = 1282 Score = 197 bits (496), Expect = 7e-50 Identities = 101/178 (56%), Positives = 137/178 (76%), Gaps = 36/178 (20%) Query: 570 KTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSD-------------NKIVSKNI 430 + +E++YQKKTP EH+LLRPD+YIG++E E +M++LS+ N KN+ Sbjct: 85 RKIEDIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKEKKTIELNNDNNEKNV 144 Query: 429 -----------------------TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEK 319 T++PGL KI+DEI+VNAADNK RDSKMS IKV+I+ Sbjct: 145 ESTTTTTTKTNKKPLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPN 204 Query: 318 NGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNI 139 IS+ N+G+GIPV +H E YV E++ G L++ SN++D E KV GGRNG+GAKL NI Sbjct: 205 ENSISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNI 264 Query: 138 FSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVI 37 FS+EF VETVDK Y+QR++ NM R +P+I Sbjct: 265 FSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPII 298
>gi|3172113|dbj|BAA28664| (AB014886) typeII DNA topoisomerase [Emericella nidulans] Length = 1579 Score = 193 bits (486), Expect = 1e-48 Identities = 95/176 (53%), Positives = 125/176 (70%), Gaps = 2/176 (1%) Query: 552 YQKKTPIEHILLRPDTYIGSVECEEKNMYILSD--NKIVSKNITFVPGLYKIFDEIIVNA 379 YQK EHI +RPD+YIGSVE + M++ + + + + +++VPGLYKIFDEI+VNA Sbjct: 60 YQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNA 119 Query: 378 ADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYD 199 ADNK D M I+V + ISV+NNG+GIPV++H + +Y+P+LIFG LLTSSNYD Sbjct: 120 ADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSSNYD 179 Query: 198 DDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMK 25 D ++K+TGGRNG+GAKLCN+FS EF VET D K+K Y Q +T NM P I K Sbjct: 180 DAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTDNMQTVGKPKITAAK 237
>gi|2447074 (U42580) PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1] Length = 1061 Score = 171 bits (428), Expect = 6e-42 Identities = 91/184 (49%), Positives = 121/184 (65%), Gaps = 1/184 (0%) Query: 552 YQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAAD 373 YQK T EH+L RPDTYIGSV + KN ++ D KI+ K++T+ P L KIFDEII N+AD Sbjct: 4 YQKLTQREHVLARPDTYIGSVAPQTKNEWVYVDGKIIRKDVTYSPALLKIFDEIITNSAD 63 Query: 372 NKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDD 193 RD K++ +KV IDEK+ +SV+N+G IP++ H EK Y+PELIFG LL N+DD Sbjct: 64 CYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDVEKCYIPELIFGHLLAGENFDDT 121 Query: 192 EKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKN-MKDAG 16 E++ GRNG G+K NIFS++F VE D K+K Y Q + NMS P + KD+ Sbjct: 122 EQRTGAGRNGIGSKATNIFSKKFDVEICDGKKK--YKQSWENNMSVMSKPKVTTCSKDSY 179 Query: 15 VKEEF 1 + F Sbjct: 180 ITTTF 184
>gi|3876590|emb|CAB04228| (Z81521) similar to DNA topoisomerase II (N-terminal region) (2 domains) [Caenorhabditis elegans] Length = 263 Score = 165 bits (414), Expect = 3e-40 Identities = 88/176 (50%), Positives = 113/176 (64%), Gaps = 3/176 (1%) Query: 564 VEELYQKKTPIEHILLRPDTYIGSVECEEKN---MYILSDNKIVSKNITFVPGLYKIFDE 394 VE+ YQKK+ +EHILLRPD+YIGS+E EK +Y + D+K+ Sbjct: 51 VEDAYQKKSHLEHILLRPDSYIGSIEHNEKKPMWVYNMKDSKLEQ--------------- 95 Query: 393 IIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLT 214 RD KM+ IK+ I+ + ISVYNNG+GIPV H EK+YVPELIFG LLT Sbjct: 96 ----------RDPKMNTIKITINTEKNEISVYNNGKGIPVTQHKVEKVYVPELIFGALLT 145 Query: 213 SSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVI 37 S NY+DDEKK+TGGRNGYGAKLCN+FS + +ET K + Q + NM++ E+P I Sbjct: 146 SYNYNDDEKKLTGGRNGYGAKLCNLFSTKVTLETSSVDYKSAFKQTWINNMTRDEEPTI 204
>gi|135994|sp|P27570|TOP2_CRIFA DNA TOPOISOMERASE II >gi|323027|pir||A45648 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3), kinetoplast-associated - Crithidia fasciculata >gi|11001|emb|CAA42182| (X59623) kinetoplast-associated type II DNA topoisomerase (toptIImt) [Crithidia fasciculata] Length = 1239 Score = 139 bits (348), Expect = 2e-32 Identities = 74/175 (42%), Positives = 115/175 (65%), Gaps = 5/175 (2%) Query: 552 YQKKTPIEHILLRPDTYIGSVECEEKNMYIL--SDNKIVSKNITFVPGLYKIFDEIIVNA 379 YQK TPI+H+LLRP+ Y+GS+E + M++ + K+V +++ GL KI DEI++NA Sbjct: 7 YQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEILLNA 66 Query: 378 ADN---KIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSS 208 ADN +R ++M+ I + I + +G I V N+G G+P+ + K+Y+PE++FG LLTSS Sbjct: 67 ADNINNSVRGARMTYISIKISD-SGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLLTSS 125 Query: 207 NYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNM 28 NY++D T GR+GYGAKL NI S +F V V + ++ +T +M P + N+ Sbjct: 126 NYNNDASSTTAGRHGYGAKLTNILSTKFSV--VCRTAGREFHMSWTDHMRMATTPRVSNV 183
>gi|135998|sp|P12531|TOP2_TRYBB DNA TOPOISOMERASE II >gi|320898|pir||A44978 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Trypanosoma brucei >gi|162305 (M26803) DNA topoisomerase II [Trypanosoma brucei] Length = 1221 Score = 136 bits (340), Expect = 1e-31 Identities = 77/183 (42%), Positives = 114/183 (62%), Gaps = 3/183 (1%) Query: 552 YQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVPGLYKIFDEIIVNA 379 Y+K TPIEH+L RP+ YIGS++ M+I + K +V + + GL KI DEI++NA Sbjct: 7 YKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEILLNA 66 Query: 378 ADN-KIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNY 202 +DN R ++M+ I+V I + G I++ N+G GIP+ + K+Y+PE++FG LLTSSNY Sbjct: 67 SDNISNRSARMTYIRVTITD-TGEITIENDGAGIPIVRSREHKLYIPEMVFGHLLTSSNY 125 Query: 201 DDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKD 22 DDD + GR+GYGAKL NI S F V + ++ + +M K P + N+ Sbjct: 126 DDDNQNAVAGRHGYGAKLTNILSLSFSV--CCRTNGREFHMSWQDHMRKATAPRVSNV-- 181 Query: 21 AGVKEE 4 G KE+ Sbjct: 182 -GTKEK 186
>gi|267151|sp|P30190|TOP2_TRYCR DNA TOPOISOMERASE II >gi|477245|pir||A48446 DNA topoisomerase II - Trypanosoma cruzi >gi|162307 (M91165) DNA topoisomerase II [Trypanosoma cruzi] >gi|737876|prf||1923363A DNA topoisomerase II [Trypanosoma cruzi] Length = 1232 Score = 135 bits (337), Expect = 3e-31 Identities = 74/175 (42%), Positives = 112/175 (63%), Gaps = 8/175 (4%) Query: 552 YQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVPGLYKIFDEIIVNA 379 Y+K TPI+H+L+RP+ Y+GSV+ +M++ K +V +++ GL KI DEI++NA Sbjct: 7 YKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEILLNA 66 Query: 378 ADNKI-RDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNY 202 +DN + +M+ I+V I E G I++ N+G GIP+ + K+Y+PE++FG LLTSSNY Sbjct: 67 SDNIANKGGRMTYIRVHITEA-GEITIENDGAGIPIVRSKEHKLYIPEMVFGHLLTSSNY 125 Query: 201 DDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY-----YYQRFTKNMSKREDPVI 37 DD + GR+GYGAKL NI S F V K ++ + + +R T DP Sbjct: 126 DDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVDPKE 185 Query: 36 KNM 28 KN+ Sbjct: 186 KNL 188
>gi|2944450 (AF051307) DNA topoisomerase II [Leishmania chagasi] Length = 1240 Score = 125 bits (311), Expect = 3e-28 Identities = 77/180 (42%), Positives = 112/180 (61%), Gaps = 11/180 (6%) Query: 567 TVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVPGLYKIFDE 394 T Y+K TPI+H+LLRP+ Y+GS+E MYI K +V + + GL KI DE Sbjct: 2 TYASKYKKLTPIDHVLLRPELYVGSIETHPTPMYIFDPEKGRMVWETMRVNQGLLKIVDE 61 Query: 393 IIVNAADNKIRDSKMSC----IKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFG 226 ++NAADN I +SK S I + I + G I+V N+G G+P+ + K+Y+PE++F Sbjct: 62 NMLNAADN-INNSKGSVRQTYISIHISD-TGEITVENDGAGLPIVRTGEHKMYIPEMVFW 119 Query: 225 QLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEF--VVETVDKKEKLYYYQRFTKNMSKR 52 L+TSSNY++D T GR+GYGAKL NI S +F V T ++ + + ++R Sbjct: 120 HLVTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHIGMATTRR 179 Query: 51 E---DPVIKNM 28 E DP KN+ Sbjct: 180 ESIMDPKEKNV 190
>gi|4234943 (AF098113) DNA topoisomerase II [Trypanosoma cruzi] >gi|4234945 (AF098110) DNA topoisomerase II [Trypanosoma cruzi] >gi|4234947 (AF098111) DNA topoisomerase II [Trypanosoma cruzi] >gi|4234949 (AF098112) DNA topoisomerase II [Trypanosoma cruzi] Length = 141 Score = 118 bits (294), Expect = 3e-26 Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 3/138 (2%) Query: 531 EHILLRPDTYIGSVECEEKNMYILSDNK--IVSKNITFVPGLYKIFDEIIVNAADNKI-R 361 +H+L+RP+ Y+GSV+ +M++ K +V +++ GL KI DEI++ +DN + Sbjct: 1 DHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEILLKPSDNIANK 60 Query: 360 DSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKV 181 +M+ I+V I E G I++ N+G GIP+ + K+Y+PE++FG LLTSSNYDD + Sbjct: 61 GGRMTYIRVHITEA-GEITIENDGAGIPIVRSKEHKLYIPEMVFGHLLTSSNYDDTSQNA 119 Query: 180 TGGRNGYGAKLCNIFSEEFVV 118 GR+GYGAKL NI S F V Sbjct: 120 VAGRHGYGAKLTNILSHRFSV 140
>gi|1280159 (U55856) similar to DNA topoisomerase II; most likely a pseudogene because all of the homologous regions cannot be incorporated into the gene [Caenorhabditis elegans] Length = 270 Score = 118 bits (294), Expect = 3e-26 Identities = 57/91 (62%), Positives = 70/91 (76%) Query: 309 ISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE 130 ISVYNNG+GIPV H EK++VPELIFG LLTSSNY++DEKKV GGRNGY AKLCNIFS Sbjct: 21 ISVYNNGKGIPVTQHKVEKVFVPELIFGTLLTSSNYNNDEKKVAGGRNGYEAKLCNIFSN 80 Query: 129 EFVVETVDKKEKLYYYQRFTKNMSKREDPVI 37 +F +ET + K + Q + NM++ E+P I Sbjct: 81 KFTMETSFRDYKSAFKQTWINNMTRDEEPKI 111
>gi|339810 (M27504) topoisomerase II [Homo sapiens] Length = 886 Score = 109 bits (269), Expect = 3e-23 Identities = 53/79 (67%), Positives = 60/79 (75%) Query: 267 HAKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 H EK+YVP LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS +F VET K+ K Sbjct: 3 HKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHS 62 Query: 87 YYQRFTKNMSKREDPVIKN 31 + Q + NM K + IK+ Sbjct: 63 FKQTWMNNMMKTSEAKIKH 81
>gi|68493|pir||ISBPT4 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) large chain - phage T4 Length = 520 Score = 91.7 bits (224), Expect = 5e-18 Identities = 57/148 (38%), Positives = 80/148 (53%), Gaps = 3/148 (2%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 IEHI R YIGS E ++ +++ +VPGL K+ DEII N+ D IR Sbjct: 12 IEHIKKRSGMYIGSSANETHERFMFGK----WESVQYVPGLVKLIDEIIDNSVDEGIRTK 67 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIP---VKIHAKEKIYVPELIFGQLLTSSNYDDDEKK 184 K+++ KN ++V +NG GIP VK E+I P + N+ DD+++ Sbjct: 68 FKFANKINVTIKNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDDKER 127 Query: 183 VTGGRNGYGAKLCNIFSEEFVVETVDKKEKL 91 VTGG NG G+ L NIFS FV ET D + + Sbjct: 128 VTGGMNGVGSSLTNIFSVMFVGETGDGQNNI 158
>gi|1351264|sp|P09176|TOPL_BPT4 DNA TOPOISOMERASE LARGE SUBUNIT (PROTEIN GP39) >gi|728617|emb|CAA29569| (X06220) DNA topoisomerase large subunit [coliphage T4] Length = 516 Score = 91.7 bits (224), Expect = 5e-18 Identities = 57/148 (38%), Positives = 80/148 (53%), Gaps = 3/148 (2%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 IEHI R YIGS E ++ +++ +VPGL K+ DEII N+ D IR Sbjct: 12 IEHIKKRSGMYIGSSANETHERFMFGK----WESVQYVPGLVKLIDEIIDNSVDEGIRTK 67 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIP---VKIHAKEKIYVPELIFGQLLTSSNYDDDEKK 184 K+++ KN ++V +NG GIP VK E+I P + N+ DD+++ Sbjct: 68 FKFANKINVTIKNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDDKER 127 Query: 183 VTGGRNGYGAKLCNIFSEEFVVETVDKKEKL 91 VTGG NG G+ L NIFS FV ET D + + Sbjct: 128 VTGGMNGVGSSLTNIFSVMFVGETGDGQNNI 158
>gi|267149|sp|Q00942|TOP2_ASFB7 DNA TOPOISOMERASE II >gi|319869|pir||ISXFAS DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - African swine fever virus >gi|210654 (M88699) topoisomerase II [African swine fever virus] >gi|780481 (U18466) topoisomerase II [African swine fever virus] >gi|1097503|prf||2113434DU topoisomerase II [African swine fever virus] Length = 1192 Score = 77.6 bits (188), Expect = 9e-14 Identities = 49/128 (38%), Positives = 73/128 (56%), Gaps = 10/128 (7%) Query: 420 PGLYKIFDEIIVNAADNK----IRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIH---- 265 P L KIFDE+IVNA D++ + K++ IK+ D+ GV S N+G GIP+ H Sbjct: 52 PALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK--GVFSCENDGPGIPIAKHEQAS 109 Query: 264 --AKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKL 91 AK +YVPE+ L +N + + + GG NG G KL + S+ ++ T D +K Sbjct: 110 LIAKRDVYVPEVFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQK- 168 Query: 90 YYYQRFTKNMSKREDPVI 37 Y Q+ + + E P I Sbjct: 169 -YVQQINQRLDIIEPPTI 185
>gi|464905|sp|P34203|TOP2_ASFM2 DNA TOPOISOMERASE II >gi|321343|pir||S27329 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - African swine fever virus >gi|58648|emb|CAA78614| (Z14245) DNA topoisomerase type II [African swine fever virus] >gi|450712|emb|CAA50820| (X71982) DNA topoisomerase type II [African swine fever virus] Length = 1191 Score = 77.3 bits (187), Expect = 1e-13 Identities = 48/128 (37%), Positives = 72/128 (55%), Gaps = 10/128 (7%) Query: 420 PGLYKIFDEIIVNAADNK----IRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIH---- 265 P L KIFDE+IVNA D++ + K++ IK+ D+ GV + N+G GIP+ H Sbjct: 52 PALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK--GVFACENDGPGIPIAKHEQAS 109 Query: 264 --AKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKL 91 AK +YVPE+ L +N + + + GG NG G KL + S+ ++ T D +K Sbjct: 110 LIAKRDVYVPEVASCHFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQK- 168 Query: 90 YYYQRFTKNMSKREDPVI 37 Y Q + + E P I Sbjct: 169 -YVQHINQRLDIIEPPTI 185
>gi|262135|bbs|120969 type II DNA topoisomerase homolog [African swine fever virus ASFV, Malawi LIL20/1, Peptide, 1191 aa] Length = 1191 Score = 74.1 bits (179), Expect = 1e-12 Identities = 47/128 (36%), Positives = 71/128 (54%), Gaps = 10/128 (7%) Query: 420 PGLYKIFDEIIVNAADNK----IRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIH---- 265 P L KIFD +IVNA D++ + K++ IK+ D+ GV + N+G GIP+ H Sbjct: 52 PALLKIFDFLIVNATDHERACHSKTKKVTYIKISFDK--GVFACENDGPGIPIAKHEQAS 109 Query: 264 --AKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKL 91 AK +YVPE+ L +N + + + GG NG G KL + S+ ++ T D +K Sbjct: 110 LIAKRDVYVPEVASCHFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQK- 168 Query: 90 YYYQRFTKNMSKREDPVI 37 Y Q + + E P I Sbjct: 169 -YVQHINQRLDIIEPPTI 185
>gi|4154989 (AE001479) DNA GYRASE SUBUNIT B [Helicobacter pylori J99] Length = 773 Score = 68.3 bits (164), Expect = 6e-11 Identities = 48/143 (33%), Positives = 72/143 (49%), Gaps = 3/143 (2%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKI 250 T V GL+ + E++ NA D + I + + E+ I V +NG GIPV IH EKI Sbjct: 29 TNVGGLHHMVYEVVDNAVDESMAGF-CDTINITLTEEGSCI-VEDNGRGIPVDIHPTEKI 86 Query: 249 YVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFT 70 ++ L +D+D KV+GG +G G + N S+ ++ KKE Y Q F Sbjct: 87 PACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTI--KKEGQIYRQEFE 144 Query: 69 KNMSKREDPVI---KNMKDAGVKEEF 1 K + E +I K+ K++G EF Sbjct: 145 KGIPISELEIIGKTKSAKESGTTIEF 170
>gi|2501294|sp|P55992|GYRB_HELPY DNA GYRASE SUBUNIT B >gi|2313611|gb|AAD07566.1| (AE000564) DNA gyrase, sub B (gyrB) [Helicobacter pylori 26695] Length = 773 Score = 67.9 bits (163), Expect = 8e-11 Identities = 47/143 (32%), Positives = 72/143 (49%), Gaps = 3/143 (2%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKI 250 T V GL+ + E++ NA D + I + + ++ I V +NG GIPV IH EKI Sbjct: 29 TNVGGLHHMVYEVVDNAVDESMAGF-CDTINITLTDEGSCI-VEDNGRGIPVDIHPTEKI 86 Query: 249 YVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFT 70 ++ L +D+D KV+GG +G G + N S+ ++ KKE Y Q F Sbjct: 87 PACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTI--KKEGQIYRQEFE 144 Query: 69 KNMSKREDPVI---KNMKDAGVKEEF 1 K + E +I K+ K++G EF Sbjct: 145 KGIPTSELEIIGKTKSAKESGTTIEF 170
>gi|3861127|emb|CAA15027| (AJ235272) DNA GYRASE SUBUNIT B (gyrB2) [Rickettsia prowazekii] Length = 807 Score = 64.8 bits (155), Expect = 7e-10 Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 1/139 (0%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ N+ D + ++V ++ KNG ++V +NG GIPV+IH +E I E Sbjct: 43 GLHHMIYEVVDNSIDEALA-GYCDLVQVTLN-KNGSVTVSDNGRGIPVEIHEEEGISAAE 100 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMS 58 +I QL +D K++GG +G G + N SE + ++ Y+ RF ++ Sbjct: 101 VIMTQLHAGGKFDQQSYKISGGLHGVGVSVVNALSEWLELRIWRNNKE--YFIRFNNGIT 158 Query: 57 KREDPVIK-NMKDAGVKEEF 1 + ++K N+ G + F Sbjct: 159 EAPLSIVKENIDKKGTEVTF 178
>gi|462227|sp|P34031|GYRB_SPICI DNA GYRASE SUBUNIT B >gi|421668|pir||S35734 DNA gyrase chain B - Spiroplasma citri (SGC3) >gi|49348|emb|CAA79523| (Z19108) DNA gyrase subunit B [Spiroplasma citri] >gi|745458|prf||2016285C DNA gyrase:SUBUNIT=B [Spiroplasma citri] Length = 640 Score = 61.7 bits (147), Expect = 6e-09 Identities = 49/149 (32%), Positives = 73/149 (48%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E I RP YIG+ + + +IV +I DE++ N A NKI+ Sbjct: 16 LEAIRKRPGMYIGATNARGLHHLVW---EIVDNSI----------DEVLANFA-NKIK-- 59 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 I ++ DE I+V +NG GIP++IH K K+ E +F L +D + K++G Sbjct: 60 ----IILNKDES---ITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISG 112 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 G +G GA + N S+ VE V K K Y Sbjct: 113 GLHGVGASVVNALSKYLKVE-VRKNNKKY 140
>gi|4099111 (U83665) topoisomerase II ParE [Mycoplasma arthritidis] Length = 614 Score = 61.3 bits (146), Expect = 8e-09 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKI 250 T + GL+ + EI+ NA D + IKV + + + VI V +NG GIPV H K Sbjct: 6 TDITGLHHLVWEIVDNALDEALAGFATD-IKVTLKKDDSVI-VEDNGRGIPVSKHGSGKT 63 Query: 249 YVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETV-DKKE 97 V EL+F +L +D+ K +GG +G G+ + N SE+ +V+ DKKE Sbjct: 64 GV-ELVFTELHAGGKFDEGVYKTSGGLHGVGSSVVNALSEKLIVKVYRDKKE 114
>gi|3695371 (AF093760) DNA gyrase subunit B [Campylobacter jejuni] Length = 685 Score = 60.5 bits (144), Expect = 1e-08 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEK 253 T + GL+ + E++ N+ D + C +D++ G V +NG GIPV +H E Sbjct: 1 TNIGGLHHMIYEVVDNSIDEAMAGH---CDTIDVEITTEGSCIVSDNGRGIPVDMHPTEN 57 Query: 252 IYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRF 73 + ++ L +D D KV+GG +G G + N S++ +V TV++ ++ Y Q F Sbjct: 58 MPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKK-LVATVERNGEI-YRQEF 115 Query: 72 TKNMSKREDPVIKNMKDAGVKEEF 1 ++ E VI K G EF Sbjct: 116 SEGKVISEFGVIGKSKKTGTTIEF 139
>gi|2338752 (AF017075) DNA gyrase subunit B [Borrelia burgdorferi] Length = 634 Score = 60.1 bits (143), Expect = 2e-08 Identities = 48/178 (26%), Positives = 80/178 (43%), Gaps = 1/178 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGSV + GL+ + E++ N+ D + Sbjct: 14 LEAVRKRPGMYIGSVS---------------------INGLHHLVYEVVDNSIDEALAGF 52 Query: 354 KMSCIKVD-IDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C ++D I + I+V +NG GIP IH +E I EL+ +L + ++ KV+ Sbjct: 53 ---CDRIDVIINLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVS 109 Query: 177 GGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKDAGVKEEF 1 GG +G G + N S F+ V++ K+ + Q F+K + + V+ G K F Sbjct: 110 GGLHGVGISVVNALS-SFLEVYVNRDGKI-FRQTFSKGIPTSKVEVVGESSVTGTKVTF 166
>gi|1708093|sp|P50028|GYRB_MYCCA DNA GYRASE SUBUNIT B Length = 643 Score = 60.1 bits (143), Expect = 2e-08 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 1/180 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIF 400 + +K E Q +E + RP YIGS +DNK GL+ + Sbjct: 3 ENKKYDESAIQVLEGLEAVRKRPGMYIGS-----------TDNK----------GLHHLV 41 Query: 399 DEIIVNAADNKIRDSKMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 EI+ NA D + C ++D+ EK+ I+V +NG GIP +H K PE+IF Sbjct: 42 WEIVDNAIDEALAGY---CTQIDVILEKDNSITVIDNGRGIPTGMHKTGKP-TPEVIFSV 97 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 L + K +GG +G G+ + N S+ F + + ++K + F KN K E P Sbjct: 98 LHAGGKFXSTAYKSSGGLHGVGSSVTNALSKRF--KAIIYRDKKIHEIEF-KNGGKLEKP 154 Query: 42 V 40 + Sbjct: 155 L 155
>gi|3915725|sp|P33769|GYRB_BORBU DNA GYRASE SUBUNIT B >gi|2688337 (AE001148) DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi] Length = 639 Score = 60.1 bits (143), Expect = 2e-08 Identities = 48/178 (26%), Positives = 80/178 (43%), Gaps = 1/178 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGSV + GL+ + E++ N+ D + Sbjct: 19 LEAVRKRPGMYIGSVS---------------------INGLHHLVYEVVDNSIDEALAGF 57 Query: 354 KMSCIKVD-IDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C ++D I + I+V +NG GIP IH +E I EL+ +L + ++ KV+ Sbjct: 58 ---CDRIDVIINLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVS 114 Query: 177 GGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKDAGVKEEF 1 GG +G G + N S F+ V++ K+ + Q F+K + + V+ G K F Sbjct: 115 GGLHGVGISVVNALS-SFLEVYVNRDGKI-FRQTFSKGIPTSKVEVVGESSVTGTKVTF 171
>gi|1170146|sp|P43053|GYRB_MYCHO DNA GYRASE SUBUNIT B >gi|453419|emb|CAA54665| (X77529) gyrB [Mycoplasma hominis] Length = 648 Score = 59.7 bits (142), Expect = 2e-08 Identities = 47/152 (30%), Positives = 67/152 (43%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS+ + GL+ + EI+ N+ D + Sbjct: 21 LEAVRKRPGMYIGSIGFK---------------------GLHHLLWEIVDNSVDEAMAGF 59 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 IK+ + N VI V +NG G+P IH+ K E I L +D KV+G Sbjct: 60 ATE-IKIKL-YPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSG 117 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQ 79 G +G GA + N S EF V V + KL+Y Q Sbjct: 118 GLHGVGASVVNALSSEFEV-WVKRDGKLHYQQ 148
>gi|1346242|sp|P47249|GYRB_MYCGE DNA GYRASE SUBUNIT B >gi|1361486|pir||C64200 DNA gyrase chain B (gyrB) - Mycoplasma genitalium (SGC3) >gi|497647 (U09251) DNA gyrase subunit B [Mycoplasma genitalium] >gi|1045671 (U39679) DNA gyrase subunit B (gyrB) [Mycoplasma genitalium] Length = 650 Score = 59.3 bits (141), Expect = 3e-08 Identities = 44/149 (29%), Positives = 67/149 (44%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS E GL+ + EI+ N+ D + Sbjct: 21 LEAVRKRPGMYIGSTGEE---------------------GLHHMIWEIVDNSIDEAM-GG 58 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 S +K+ +++ N V V ++G GIPV IH K E +F L +D+D KV+G Sbjct: 59 FASFVKLTLED-NFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSG 117 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 G +G GA + N S F V + +K + Sbjct: 118 GLHGVGASVVNALSSSFKVWVFRQNKKYF 146
>gi|4033400|sp|O87545|GYRB_TREDE DNA GYRASE SUBUNIT B >gi|3676691 (AF083949) DNA gyrase subunit B; GyrB [Treponema denticola] Length = 638 Score = 59.3 bits (141), Expect = 3e-08 Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 1/156 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ N D + Sbjct: 17 LEAVRKRPGMYIGS---------------------TGPDGLHHLVYEVVDNCIDEAMAGF 55 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C K+ + E N ++ V +NG GIPV IH EKI EL+ +L +D KV+ Sbjct: 56 ---CDKILVVLEPNDIVRVEDNGRGIPVDIHPTEKISALELVLTRLHAGGKFDKGSYKVS 112 Query: 177 GGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTK 67 GG +G G + N S +E K+ +Y +F K Sbjct: 113 GGLHGVGVSVVNALS--VWMEAKVYKDGFEHYAKFEK 147
>gi|2827016 (AF008210) DNA gyrase subunit B [Buchnera aphidicola] Length = 803 Score = 59.3 bits (141), Expect = 3e-08 Identities = 39/115 (33%), Positives = 61/115 (52%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + EI+ N+ D + IKV I N V S+ ++G GIP IH +EKI E Sbjct: 35 GLHHMVFEIVDNSIDEALAGFCKE-IKVVIHSDNSV-SIKDDGRGIPTDIHPEEKISAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRF 73 +I L + +D+ K++GG +G G + N SE+ +E + K K Y Q++ Sbjct: 93 VIMTVLHSGGKFDNASYKISGGLHGVGISVVNALSEK--LELIIYKNKKKYRQQY 145
>gi|121890|sp|P22447|GYRB_MYCPN DNA GYRASE SUBUNIT B >gi|68492|pir||ISYMBP DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Mycoplasma pneumoniae (SGC3) >gi|2146112|pir||S73477 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) chain B - Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|44484|emb|CAA37622| (X53555) gyrase B subunit [Mycoplasma pneumoniae] >gi|1673811 (AE000016) Mycoplasma pneumoniae, DNA gyrase subunit B; similar to Swiss-Prot Accession Number P22447, from M. pneumoniae [Mycoplasma pneumoniae] Length = 650 Score = 58.9 bits (140), Expect = 4e-08 Identities = 54/178 (30%), Positives = 76/178 (42%), Gaps = 2/178 (1%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS E GL+ + EII N+ D + Sbjct: 21 LEAVRKRPGMYIGSTGEE---------------------GLHHMIWEIIDNSIDEAM-GG 58 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 S +K+ + + N V V ++G GIPV IH K E +F L +D+D KV+G Sbjct: 59 FASTVKLTLKD-NFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSG 117 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNM--KDAGVKEEF 1 G +G GA + N S F V +E Y+ F D V + K+ G K EF Sbjct: 118 GLHGVGASVVNALSSSFKVWVA--REHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEF 175
>gi|4099106 (U83664) gyrase B [Mycoplasma arthritidis] Length = 638 Score = 58.9 bits (140), Expect = 4e-08 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 7/170 (4%) Query: 582 MKKQKTVEELYQKKTP----IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPG 415 M KQ+ + + K +E + RP YIGS+ G Sbjct: 1 MSKQEEISKYGAKNIQFLEGLEAVRKRPGMYIGSIGFR---------------------G 39 Query: 414 LYKIFDEIIVNAADNKIRDSKMSCIKVDIDEK---NGVISVYNNGEGIPVKIHAKEKIYV 244 L+ + EI+ N+ D M+ +I+ K N I V +NG G+PV IH K Sbjct: 40 LHHLIWEIVDNSVDEA-----MAGFATNIEVKLHPNNEIEVIDNGRGMPVDIHPTTKKSA 94 Query: 243 PELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRF 73 E I L +D KV+GG +G G + N S+ F E K+ +YYQ++ Sbjct: 95 VETILTVLYAGGKFDSTNYKVSGGLHGVGVSVVNALSDSF--EVWVKRGGKFYYQKY 149
>gi|2127614|pir||S62834 gyrase B - Mycoplasma pneumoniae (SGC3) (fragment) >gi|1209515 (U34816) gyrase B [Mycoplasma pneumoniae] Length = 637 Score = 58.9 bits (140), Expect = 4e-08 Identities = 54/178 (30%), Positives = 76/178 (42%), Gaps = 2/178 (1%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS E GL+ + EII N+ D + Sbjct: 21 LEAVRKRPGMYIGSTGEE---------------------GLHHMIWEIIDNSIDEAM-GG 58 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 S +K+ + + N V V ++G GIPV IH K E +F L +D+D KV+G Sbjct: 59 FASTVKLTLKD-NFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSG 117 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNM--KDAGVKEEF 1 G +G GA + N S F V +E Y+ F D V + K+ G K EF Sbjct: 118 GLHGVGASVVNALSSSFKVWVA--REHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEF 175
>gi|4376548|gb|AAD18424| (AE001612) DNA Gyrase Subunit B [Chlamydia pneumoniae] Length = 805 Score = 58.6 bits (139), Expect = 5e-08 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKE-- 256 T + GL+ + E++ N+ D + S I V I E G++ V +NG GIP+++H +E Sbjct: 33 TGITGLHHLVYEVVDNSIDEAMA-GYCSRIDVRILEDGGIVIV-DNGRGIPIEVHERESA 90 Query: 255 ----KIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 ++ E++ L +D D KV+GG +G G N SE+ +V TV K +K Y Sbjct: 91 KQGREVSALEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEK-LVATVFKDKKCY 149
>gi|121893|sp|P13364|GYRB_PSEPU DNA GYRASE SUBUNIT B >gi|94906|pir||S12608 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Pseudomonas putida >gi|45694|emb|CAA38447| (X54631) DNA gyrase [Pseudomonas putida] Length = 806 Score = 58.6 bits (139), Expect = 5e-08 Identities = 36/110 (32%), Positives = 59/110 (52%), Gaps = 1/110 (0%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSC-IKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVP 241 GL+ + E++ N+ D + + + DE ISV +NG GIPV +H +E + Sbjct: 37 GLHHMVFEVVDNSIDEALAGHCDDITVIIHTDES---ISVRDNGRGIPVDVHKEEGVSAA 93 Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ V+ TV + K++ Sbjct: 94 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVL-TVRRSGKIW 143
>gi|4033398|sp|O67137|GYRB_AQUAE DNA GYRASE SUBUNIT B >gi|2983522 (AE000719) gyrase B [Aquifex aeolicus] Length = 792 Score = 58.6 bits (139), Expect = 5e-08 Identities = 51/195 (26%), Positives = 78/195 (39%) Query: 585 SMKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYK 406 S Q+ E + + +EH+ LRP YIG + GL+ Sbjct: 6 SQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGER---------------------GLHH 44 Query: 405 IFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFG 226 + EI+ NA D + + I V I N V +V ++G GIPV IH + E++F Sbjct: 45 LIWEILDNAVDEAVAGYARN-ISVTIHRDNSV-TVEDDGRGIPVDIHPETGKPAVEMVFT 102 Query: 225 QLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKRED 46 L ++ +GG +G GA + N SE +VE ++ Y F + Sbjct: 103 MLGAGGKFEKKVYTYSGGLHGVGASVVNALSEWLIVEVY--RDGKIYRMAFKRGEVVEPL 160 Query: 45 PVIKNMKDAGVKEEF 1 V+ K G K F Sbjct: 161 HVVGETKKRGTKVSF 175
>gi|3510605 (AF044267) gyrase subunit B [Chlamydia trachomatis] Length = 796 Score = 58.2 bits (138), Expect = 7e-08 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDE-KNGVISVYNNGEGIPVKIHAKE- 256 T V GL+ + E++ N+ D + C +V + ++G IS+ +NG GIP++IH KE Sbjct: 25 TGVTGLHHLVYEVVDNSIDEAMAGF---CTEVVVRILEDGGISISDNGRGIPIQIHEKES 81 Query: 255 -----KIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKL 91 +I E++ L +D D KV+GG +G G N SE+F+ + K+ Sbjct: 82 AKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEKFIAKVF--KDGQ 139 Query: 90 YYYQRFTK 67 Y F++ Sbjct: 140 AYSMEFSR 147
>gi|2501299|sp|P78016|PARE_MYCPN TOPOISOMERASE IV SUBUNIT B >gi|2146668|pir||S73358 topoisomerase IV chain B - Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1673680 (AE000004) Mycoplasma pneumoniae, topoisomerase IV subunit B; similar to Swiss-Prot Accession Number P05652, from B. subtilis [Mycoplasma pneumoniae] Length = 635 Score = 58.2 bits (138), Expect = 7e-08 Identities = 41/149 (27%), Positives = 69/149 (45%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 ++ + RP YIGS + G + + EI+ N D ++ Sbjct: 16 LDAVKKRPGMYIGSTDSR---------------------GFHHLLWEILDNCVD-EVLSG 53 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 + I V + +N I+V +NG GIP + H+ KI + +F L +D+D K+ G Sbjct: 54 FANTIAVVLHAENQ-ITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAG 112 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 G +G GA + N S++ V TV ++ K+Y Sbjct: 113 GLHGVGASVVNALSDQLQV-TVKRQGKVY 140
>gi|3913790|sp|O08399|GYRB_TREPA DNA GYRASE SUBUNIT B >gi|2102700 (U78094) DNA gyrase subunit B [Treponema pallidum] >gi|3323330 (AE001268) DNA gyrase, subunit B (gyrB) [Treponema pallidum] Length = 637 Score = 58.2 bits (138), Expect = 7e-08 Identities = 43/158 (27%), Positives = 68/158 (42%), Gaps = 1/158 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ N D + Sbjct: 16 LEAVRKRPGMYIGS---------------------TGPNGLHHLVYEVVDNCIDEAMAGY 54 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C ++ + E+ V+ V +NG GIPV +H E + E++ +L +D KV+ Sbjct: 55 ---CDRITVVLEQGNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKSYKVS 111 Query: 177 GGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 GG +G G + N S VE ++ YYQ+F M Sbjct: 112 GGLHGVGVSVVNALS--LWVEVTVYRDGAEYYQKFNVGM 148
>gi|3328595 (AE001292) DNA Gyrase Subunit B [Chlamydia trachomatis] Length = 804 Score = 58.2 bits (138), Expect = 7e-08 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDE-KNGVISVYNNGEGIPVKIHAKE- 256 T V GL+ + E++ N+ D + C +V + ++G IS+ +NG GIP++IH KE Sbjct: 33 TGVTGLHHLVYEVVDNSIDEAMAGF---CTEVVVRILEDGGISISDNGRGIPIQIHEKES 89 Query: 255 -----KIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKL 91 +I E++ L +D D KV+GG +G G N SE+F+ + K+ Sbjct: 90 AKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEKFIAKVF--KDGQ 147 Query: 90 YYYQRFTK 67 Y F++ Sbjct: 148 AYSMEFSR 155
>gi|2118337|pir||JC4960 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B - Thermotoga maritima >gi|1622792 (U49692) DNA topoisomerase II subunit B [Thermotoga maritima] Length = 636 Score = 57.8 bits (137), Expect = 9e-08 Identities = 43/149 (28%), Positives = 67/149 (44%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + +RP YIGS T GL+ + E++ N+ D + Sbjct: 15 LEPVRMRPGMYIGS---------------------TGKRGLHHLVYEVVDNSVDEALA-G 52 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 I+V + E +G + V +NG GIPV IH +E E++F L + D K++G Sbjct: 53 YCDWIRVTLHE-DGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISG 111 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 G +G G + N SE V V + K+Y Sbjct: 112 GLHGVGVSVVNALSEWLEVR-VHRDGKIY 139
>gi|454038 (U04527) DNA gyrase b subunit [Borrelia burgdorferi] Length = 385 Score = 57.8 bits (137), Expect = 9e-08 Identities = 49/178 (27%), Positives = 81/178 (44%), Gaps = 2/178 (1%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGSV + GL+ + E++ N+ D + Sbjct: 18 LEAVRKRPGMYIGSVS---------------------INGLHHLVYEVVDNSIDEALA-- 54 Query: 354 KMSCIKVD-IDEKNGVISVYNNGEGIPVKIHAKEKIYVP-ELIFGQLLTSSNYDDDEKKV 181 C ++D I + I+V +NG GIP IH +E I V EL+ +L + ++ KV Sbjct: 55 -AFCDRIDVIINLDNTITVIDNGRGIPTDIHEEEGISVTLELVLTKLHSGGKFNKGTYKV 113 Query: 180 TGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKDAGVKEEF 1 +GG +G G + N S F+ V++ K+ + Q F+K + + V+ G K F Sbjct: 114 SGGLHGVGISVVNALS-SFLEVYVNRDGKI-FRQTFSKGIPTSKVEVVGESSVTGTKVTF 171
>gi|3859564 (AF098862) DNA gyrase subunit B [Borrelia hermsii] Length = 634 Score = 57.8 bits (137), Expect = 9e-08 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 1/178 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGSV + GL+ + E++ N+ D + Sbjct: 14 LEAVRKRPGMYIGSVS---------------------INGLHHLVYEVVDNSIDEALAGF 52 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C K+++ + ++V +NG GIP +H +E I EL+ +L + ++ KV+ Sbjct: 53 ---CDKIEVVINSDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGTYKVS 109 Query: 177 GGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKDAGVKEEF 1 GG +G G + N S F+ V + KL + Q +++ + E +I G K F Sbjct: 110 GGLHGVGISVVNALS-SFLAVIVSRDGKL-FKQTYSRGIPTSEVDIIGVSSARGTKVTF 166
>gi|1170145|sp|P43701|GYRB_HAEIN DNA GYRASE SUBUNIT B >gi|1074019|pir||A64078 DNA gyrase, subunit B (gyrB) homolog - Haemophilus influenzae (strain Rd KW20) >gi|1573554 (U32738) DNA gyrase, subunit B (gyrB) [Haemophilus influenzae Rd] Length = 806 Score = 57.8 bits (137), Expect = 9e-08 Identities = 35/97 (36%), Positives = 53/97 (54%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + S I V I + N V SV ++G GIPV IH +E + E Sbjct: 39 GLHHMVFEVVDNAIDEALA-GHCSDIIVTIHDDNSV-SVQDDGGGIPVDIHPEEGVSAAE 96 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEE 127 +I L +DD+ KV+GG +G G + N S++ Sbjct: 97 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDK 133
>gi|121887|sp|P05652|GYRB_BACSU DNA GYRASE SUBUNIT B >gi|80348|pir||E22930 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Bacillus subtilis >gi|40018|emb|CAA26221| (X02369) ORF 638 (aa 1-638) [Bacillus subtilis] >gi|467396|dbj|BAA05242| (D26185) B subunit of DNA gyrase [Bacillus subtilis] >gi|2632273|emb|CAB11782| (Z99104) DNA gyrase (subunit B) [Bacillus subtilis] Length = 638 Score = 57.4 bits (136), Expect = 1e-07 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 1/149 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS + GL+ + EI+ N+ D + Sbjct: 19 LEAVRKRPGMYIGSTNSK---------------------GLHHLVWEIVDNSIDEALAGY 57 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C ++I EK+ I+V +NG GIPV IH K E+I L +D KV+ Sbjct: 58 ---CTDINIQIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVS 114 Query: 177 GGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 GG +G GA + N S E V TV + K++ Sbjct: 115 GGLHGVGASVVNALSTELDV-TVHRDGKIH 143
>gi|1352716|sp|P47445|PARE_MYCGE TOPOISOMERASE IV SUBUNIT B >gi|1361869|pir||D64222 topoisomerase IV chain B - Mycoplasma genitalium (SGC3) >gi|3844801 (U39700) topoisomerase IV subunit B (parE) [Mycoplasma genitalium] Length = 633 Score = 56.6 bits (134), Expect = 2e-07 Identities = 41/149 (27%), Positives = 67/149 (44%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 ++ + RP YIGS + + GL+ + EI+ N+ D + Sbjct: 16 LDAVKKRPGMYIGSTDSK---------------------GLHHMLWEILANSVDEVLAGY 54 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 + I V +D N I+V ++G GIP +IH I + +F L +DD K+ G Sbjct: 55 ATN-ITVTLD-LNNTITVSDDGRGIPYEIHQDSNISTIDTVFTFLHAGGKFDDQSYKLAG 112 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 G +G GA + N S+ V TV + ++Y Sbjct: 113 GLHGVGASVVNALSDHLEV-TVKRNGQIY 140
>gi|4033396|sp|O50627|GYRB_BACS5 DNA GYRASE SUBUNIT B >gi|2760177|dbj|BAA24187| (AB010081) B subunit of DNA gyrase [Bacillus sp.] Length = 637 Score = 56.6 bits (134), Expect = 2e-07 Identities = 55/193 (28%), Positives = 78/193 (39%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIF 400 ++Q E Q +E + RP YIGS GL+ + Sbjct: 4 EQQAYDESQIQVLEGLEAVRKRPGMYIGSTSSR---------------------GLHHLV 42 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 EI+ N+ D + I V I+E N I+V +NG GIPV IH K E+I L Sbjct: 43 WEIVDNSIDEAMAGF-CDEIGVVIEEDNS-ITVTDNGRGIPVGIHEKMGRPAVEVIMTVL 100 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 + KV+GG +G GA + N S VE +E +YQ+F + + + V Sbjct: 101 HAGGKFGGGGYKVSGGLHGVGASVVNALSTMLEVEV--HREGKVHYQKFHRGVPAADLEV 158 Query: 39 IKNMKDAGVKEEF 1 I G K F Sbjct: 159 IGTTDRTGTKIHF 171
>gi|4033401|sp|P94281|GYRB_BARBA DNA GYRASE SUBUNIT B >gi|1766064 (U82225) GyrB [Bartonella bacilliformis] Length = 692 Score = 56.6 bits (134), Expect = 2e-07 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + LRP YIG + + L+ +F EII NA D + Sbjct: 64 LEPVRLRPGMYIGGTDSK---------------------ALHHLFSEIIDNAMDEAVA-G 101 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAK--EKIYVPELIFGQLLTSSNYDDDEKKV 181 I + +D N ++V +NG GIP++ H + +K + E+I L + +D + Sbjct: 102 YADLIDITLDSNN-YLTVTDNGRGIPIENHPQIPDKSTL-EVIMTHLHSGGKFDGKAYQT 159 Query: 180 TGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 +GG +G G + N S++ VE +E+ Y QRF++ + Sbjct: 160 SGGLHGVGISVVNALSDDMEVEVA--RERKLYRQRFSRGI 197
>gi|290547 (L10328) DNA gyrase, subunit B [Escherichia coli] Length = 804 Score = 55.8 bits (132), Expect = 3e-07 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE--EFVVETVDKKEKLYY 85 +I L +DD+ KV+GG +G G + N S+ E V++ K + Y Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 145
>gi|121888|sp|P06982|GYRB_ECOLI DNA GYRASE SUBUNIT B >gi|68491|pir||ISECTB DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Escherichia coli >gi|41646|emb|CAA27871| (X04341) gyrase B (AA 1-804) [Escherichia coli] Length = 804 Score = 55.8 bits (132), Expect = 3e-07 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE--EFVVETVDKKEKLYY 85 +I L +DD+ KV+GG +G G + N S+ E V++ K + Y Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 145
>gi|1790134 (AE000447) DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli] Length = 804 Score = 55.8 bits (132), Expect = 3e-07 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE--EFVVETVDKKEKLYY 85 +I L +DD+ KV+GG +G G + N S+ E V++ K + Y Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 145
>gi|2160009|dbj|BAA20341| (D87842) DNA gyrase subunit B [Escherichia coli] Length = 804 Score = 55.8 bits (132), Expect = 3e-07 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE--EFVVETVDKKEKLYY 85 +I L +DD+ KV+GG +G G + N S+ E V++ K + Y Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 145
>gi|529464 (L35044) topoisomerase II subunit B [Mycoplasma gallisepticum] Length = 633 Score = 55.4 bits (131), Expect = 4e-07 Identities = 42/149 (28%), Positives = 67/149 (44%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS + GL+ + E+ NA D + S Sbjct: 16 LEPVRKRPGMYIGSTDTR---------------------GLHHLVWELFDNAVDEALNGS 54 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 I+V + +K+G I V +NG GIPV + + + ++ L +DD KV+G Sbjct: 55 ANK-IEV-VHKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSG 112 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 G +G GA + N S + +V TV + +Y Sbjct: 113 GLHGVGASVVNALSRKLIV-TVHRDGGMY 140
>gi|3212436|pdb|1AJ6| Novobiocin-Resistant Mutant (R136h) Of The N-Terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 Score = 55.4 bits (131), Expect = 4e-07 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 34 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAE 91 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE--EFVVETVDKKEKLYY 85 +I L +DD+ KV+GG +G G + N S+ E V++ K + Y Sbjct: 92 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQHEGKIHRQIY 144
>gi|2501295|sp|Q60008|GYRB_SALTY DNA GYRASE SUBUNIT B >gi|1546916|emb|CAA69221| (Y07916) subunit B of DNA gyrase [Salmonella typhimurium] Length = 804 Score = 55.0 bits (130), Expect = 6e-07 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 35 GLHHMVFEVVDNAIDEALA-GHCKDIVVTIHADNSV-SVTDDGRGIPTGIHPEEGVSAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE--EFVVETVDKKEKLYY 85 +I L +DD+ KV+GG +G G + N S+ E V++ K + Y Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIY 145
>gi|1617217|emb|CAA69665| (Y08383) subunit B of DNA gyrase [Salmonella typhimurium] Length = 804 Score = 55.0 bits (130), Expect = 6e-07 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 35 GLHHMVFEVVDNAIDEALA-GHCKDIVVTIHADNSV-SVTDDGRGIPTGIHPEEGVSAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE--EFVVETVDKKEKLYY 85 +I L +DD+ KV+GG +G G + N S+ E V++ K + Y Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIY 145
>gi|121892|sp|P22840|GYRB_PROMI DNA GYRASE SUBUNIT B >gi|96641|pir||JQ0736 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Proteus mirabilis (fragment) >gi|150881 (M58352) DNA gyrase beta-subunit [Proteus mirabilis] Length = 182 Score = 55.0 bits (130), Expect = 6e-07 Identities = 36/110 (32%), Positives = 57/110 (51%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + I V I N V SV ++G GIP IH +E + E Sbjct: 35 GLHHMVFEVVDNAIDEALAGYCDEII-VTIHSDNSV-SVRDDGRGIPTGIHEEEGVSAAE 92 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 +I L +DD+ KV+GG +G G + N SE+ + T+ + K++ Sbjct: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLEL-TIHRDGKIH 141
>gi|1777317|dbj|BAA11084| (D67074) DNA topoisomerase IV GrlB subunit [Staphylococcus aureus] Length = 663 Score = 54.7 bits (129), Expect = 7e-07 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 2/193 (1%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIF 400 K+ ++ Q +E + RP YIGS + GL+ + Sbjct: 3 KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKR---------------------GLHHLV 41 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 EI+ N+ D ++ + + I V I+ K+G IS+ +NG G+P IH K V E+IF L Sbjct: 42 YEIVDNSVD-EVLNGYGNEIDVTIN-KDGSISIEDNGRGMPTGIHKSGKPTV-EVIFTVL 98 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 + K +GG +G GA + N SE VE ++ Y+Q F KN + Sbjct: 99 HAGGKFGQGGYKTSGGLHGVGASVVNALSEWLEVEI--HRDGSIYHQSF-KNGGSPSSGL 155 Query: 39 IK--NMKDAGVKEEF 1 +K K G K F Sbjct: 156 VKKGKTKKTGTKVTF 170
>gi|1709584|sp|P50072|PARE_STAAU TOPOISOMERASE IV SUBUNIT B >gi|2126578|pir||S54426 gyrase-like protein beta chain - Staphylococcus aureus >gi|561879 (L25288) gyrase-like protein beta subunit [Staphylococcus aureus] >gi|1777320|dbj|BAA11086| (D67075) DNA topoisomerase IV GrlB subunit [Staphylococcus aureus] Length = 663 Score = 54.3 bits (128), Expect = 1e-06 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 2/193 (1%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIF 400 K+ ++ Q +E + RP YIGS + GL+ + Sbjct: 3 KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKR---------------------GLHHLV 41 Query: 399 DEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQL 220 EI+ N+ D ++ + + I V I+ K+G IS+ +NG G+P IH K V E+IF L Sbjct: 42 YEIVDNSVD-EVLNGYGNEIDVTIN-KDGSISIEDNGRGMPTGIHKSGKPTV-EVIFTVL 98 Query: 219 LTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPV 40 + K +GG +G GA + N SE VE ++ Y+Q F KN + Sbjct: 99 HAGGKFGQGGYKTSGGLHGVGASVVNALSEWLEVEI--HRDGNIYHQSF-KNGGSPSSGL 155 Query: 39 IK--NMKDAGVKEEF 1 +K K G K F Sbjct: 156 VKKGKTKKTGTKVTF 170
>gi|1346241|sp|P47720|GYRB_MYCGA DNA GYRASE SUBUNIT B >gi|603237 (U18306) DNA gyrase B subunit [Mycoplasma gallisepticum] >gi|1583652|prf||2121321A DNA gyrase:SUBUNIT=B [Mycoplasma gallisepticum] Length = 646 Score = 52.7 bits (124), Expect = 3e-06 Identities = 34/113 (30%), Positives = 58/113 (51%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + EII N+ D + + +K+ + + N ++ V ++G GIPV IH K E Sbjct: 38 GLHHMIWEIIDNSVDEMMAGYGTT-VKLTLKD-NYLVEVEDDGRGIPVDIHEKTNKSTVE 95 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQ 79 + L +D D ++GG +G GA + N S F V V++ K++Y + Sbjct: 96 TVLTILHAGGKFDSDTYSMSGGLHGVGASVVNALSSSFKV-WVNRDYKIHYIE 147
>gi|1346240|sp|P48197|GYRB_CAUCR DNA GYRASE SUBUNIT B >gi|1049326 (U37793) DNA gyrase beta subunit [Caulobacter crescentus] Length = 212 Score = 52.3 bits (123), Expect = 4e-06 Identities = 29/96 (30%), Positives = 52/96 (53%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + ++V ++ +G ++V ++G GIPV +H E + E Sbjct: 56 GLHHMVYEVVDNAIDEALAGHATK-VQVILNA-DGSVTVTDDGRGIPVDMHEGEGVSAAE 113 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE 130 +I QL +D + KV+GG +G G + N S+ Sbjct: 114 VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSD 149
>gi|121891|sp|P22118|GYRB_NEIGO DNA GYRASE SUBUNIT B >gi|150257 (M59981) DNA gyrase [Neisseria gonorrhoeae] Length = 781 Score = 52.3 bits (123), Expect = 4e-06 Identities = 36/139 (25%), Positives = 67/139 (47%), Gaps = 1/139 (0%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVP 241 GL+ + E++ NA D + C K+ + + +SV +NG G+P IH KE Sbjct: 39 GLHHMVFEVLDNAIDEALAGH---CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAA 95 Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +D++ K++GG +G G + N S ++V T+ + K ++ RF + Sbjct: 96 EVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALS-DWVTLTIYRDGK-EHFVRFVRGE 153 Query: 60 SKREDPVIKNMKDAGVKEEF 1 ++ ++ + G F Sbjct: 154 TEEPLKIVGDSDKKGTTVRF 173
>gi|482597|pir||A49794 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B, nalidixic acid-resistant - Neisseria gonorrhoeae (strain MUG116) Length = 781 Score = 52.3 bits (123), Expect = 4e-06 Identities = 36/139 (25%), Positives = 67/139 (47%), Gaps = 1/139 (0%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVP 241 GL+ + E++ NA D + C K+ + + +SV +NG G+P IH KE Sbjct: 39 GLHHMVFEVLDNAIDEALAGH---CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAA 95 Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +D++ K++GG +G G + N S ++V T+ + K ++ RF + Sbjct: 96 EVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALS-DWVTLTIYRDGK-EHFVRFVRGE 153 Query: 60 SKREDPVIKNMKDAGVKEEF 1 ++ ++ + G F Sbjct: 154 TEEPLKIVGDSDKKGTTVRF 173
>gi|121889|sp|P21558|GYRB_HALSQ DNA GYRASE SUBUNIT B >gi|99223|pir||A39135 DNA topoisomerase chain B homolog - Haloferax sp >gi|149024 (M38373) DNA gyrase beta-subunit [Haloferax alicantei] >gi|1899004 (L26977) DNA gyrase beta-subunit [Shuttle vector pMDS20] Length = 639 Score = 51.9 bits (122), Expect = 5e-06 Identities = 39/140 (27%), Positives = 61/140 (42%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS + GL+ + E++ N+ D + Sbjct: 18 LEAVRKRPAMYIGSTDSR---------------------GLHHLVYEVVDNSIDEALA-G 55 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 I+V + E +G +SV +NG GIPV H + E+I L +D+ +V+G Sbjct: 56 HCDAIEVALHE-DGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSG 114 Query: 174 GRNGYGAKLCNIFSEEFVVE 115 G +G G + N S E VE Sbjct: 115 GLHGVGVTVVNALSSELEVE 134
>gi|3980296|emb|CAA50726| (X71911) topoisomerase IIb [Homo sapiens] Length = 57 Score = 51.5 bits (121), Expect = 6e-06 Identities = 23/30 (76%), Positives = 27/30 (89%) Query: 576 KQKTVEELYQKKTPIEHILLRPDTYIGSVE 487 K+ +VE +YQKKT +EHILLRPDTYIGSVE Sbjct: 24 KKLSVERVYQKKTQLEHILLRPDTYIGSVE 53
>gi|538664|pir||C49347 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B chain - Caulobacter crescentus (fragment) Length = 203 Score = 50.4 bits (118), Expect = 1e-05 Identities = 29/96 (30%), Positives = 51/96 (52%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + ++V ++ +G ++V ++G GIPV +H E + E Sbjct: 56 GLHHMVYEVVDNAIDEALAGHATK-VQVILNA-DGSVTVTDDGRGIPVDMHEGEGVSAAE 113 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE 130 +I QL +D + KV+GG +G G N S+ Sbjct: 114 VIMTQLHAGGKFDQNSYKVSGGLHGVGVSDVNALSD 149
>gi|4033402|sp|P94604|GYRB_CLOAB DNA GYRASE SUBUNIT B >gi|1790875 (U35453) DNA gyrase subunit B [Clostridium acetobutylicum] Length = 637 Score = 50.4 bits (118), Expect = 1e-05 Identities = 46/157 (29%), Positives = 67/157 (42%) Query: 585 SMKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYK 406 S K + E Q +E + RP YIG+ T GL+ Sbjct: 2 SEKNEIYDESQIQVLEGLEAVRKRPGMYIGT---------------------TGTRGLHH 40 Query: 405 IFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFG 226 + EI+ N+ D + S IKV I + N V +V ++G G+P+ IH K K E+I Sbjct: 41 LVYEIVDNSIDEALA-GYCSHIKVFIHKDNSV-TVSDDGRGMPIGIHHKMKKPTVEVIMT 98 Query: 225 QLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVE 115 L + +V+GG +G GA + N SE VE Sbjct: 99 ILHAGGKFGGGAYRVSGGLHGVGASVVNALSETCEVE 135
>gi|3513506 (AF036961) topoisomerase IV subunit [Mycoplasma hominis] Length = 639 Score = 50.4 bits (118), Expect = 1e-05 Identities = 47/178 (26%), Positives = 73/178 (40%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 ++ + RP YIGS + GL+ + E NA D + Sbjct: 17 LDAVRKRPGMYIGSTDSS---------------------GLHHLIWESFDNAIDEALSGF 55 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 I V + + + VI V +NG GIPV H K V EL+F +L + D K +G Sbjct: 56 ANKII-VTLKKDSSVI-VEDNGRGIPVNKHESGKSGV-ELVFTELHAGGKFGDGAYKTSG 112 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDPVIKNMKDAGVKEEF 1 G +G G+ + N S + VE ++K Y+ F ++ + I G K +F Sbjct: 113 GLHGVGSSVVNALSSK--VEVTVWRDKKAYFTAFQQDTIIEKTHEISPTTKQGTKVQF 168
>gi|3128305 (AF010496) DNA gyrase subunit b [Rhodobacter capsulatus] Length = 652 Score = 50.4 bits (118), Expect = 1e-05 Identities = 39/127 (30%), Positives = 64/127 (49%), Gaps = 1/127 (0%) Query: 414 LYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAK-EKIYVPE 238 L+ + EI+ NA D + + I+V+++ +G ++V +NG GIPV H K E Sbjct: 44 LHHMVAEILDNAMDEAVA-GHANRIEVEVNA-DGSVTVRDNGRGIPVDPHPKFPGKSALE 101 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMS 58 +I L + + +GG NG G+ + N S+ VV+ KE Y QRF++ + Sbjct: 102 VILCTLHAGGKFSNKAYSTSGGLNGVGSSVVNALSDLMVVQVARNKE--LYEQRFSRGVP 159 Query: 57 KREDPVIK 34 + PV K Sbjct: 160 --QGPVAK 165
>gi|4033395|sp|O33367|GYRB_MYXXA DNA GYRASE SUBUNIT B >gi|2578422|emb|CAA04176| (AJ000543) DNA gyrase B subunit [Myxococcus xanthus] Length = 815 Score = 50.4 bits (118), Expect = 1e-05 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 429 TFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDID-EKNGVISVYNNGEGIPVKIHAK-E 256 T GL+K+ E++ NA D + C +++ +G +SV +NG GIPV H K Sbjct: 43 TMAYGLHKLVYEVVDNAVDESLAGH---CTDIEVVIHVDGSLSVQDNGRGIPVGPHPKFP 99 Query: 255 KIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQR 76 E++ +L S + + KV+GG +G G N SE F V + + Y Q Sbjct: 100 GKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTCVNFLSEWFKVRV--HRNGIVYEQA 157 Query: 75 FTKNM 61 + + + Sbjct: 158 YAQGV 162
>gi|1490397|emb|CAA91553| (Z67740) DNA gyrase [Streptococcus pneumoniae] Length = 648 Score = 50.0 bits (117), Expect = 2e-05 Identities = 44/152 (28%), Positives = 67/152 (43%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + +RP YIGS E GL+ + EI+ N+ D + Sbjct: 24 LEAVRMRPGMYIGSTSKE---------------------GLHHLVWEIVDNSIDEALAGF 62 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 S I+V I E + I+V ++G GIPV I K E +F L + KV+G Sbjct: 63 A-SHIQVFI-EPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSG 120 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQ 79 G +G G+ + N S + V V K K++Y + Sbjct: 121 GLHGVGSSVVNALSTQLDVH-VHKNGKIHYQE 151
>gi|2501296|sp|P77966|GYRB_SYNY3 DNA GYRASE SUBUNIT B >gi|1652801|dbj|BAA17720| (D90908) DNA gyrase B subunit [Synechocystis sp.] Length = 1078 Score = 50.0 bits (117), Expect = 2e-05 Identities = 42/156 (26%), Positives = 65/156 (40%), Gaps = 1/156 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ NA D + Sbjct: 19 LEPVRKRPGMYIGS---------------------TGPKGLHHLVYEVVDNAIDEALAGY 57 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C ++ID +G ++V +NG GIP IH E + L + KV+ Sbjct: 58 ---CTHIEIDINADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVS 114 Query: 177 GGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTK 67 GG +G G + N SE VE ++ ++QRF + Sbjct: 115 GGLHGVGVSVVNALSE--WVEVKVWRQGKEHFQRFER 149
>gi|392774 (U00592) DNA gyrase B subunit [Caulobacter crescentus] Length = 202 Score = 50.0 bits (117), Expect = 2e-05 Identities = 29/96 (30%), Positives = 51/96 (52%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ NA D + ++V ++ +G ++V ++G GIPV +H E + E Sbjct: 56 GLHHMVYEVVDNAIDEALAGHATK-VQVILNA-DGSVTVTDDGRGIPVDMHEGEGVSAAE 113 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE 130 +I QL +D + KV+GG +G G N S+ Sbjct: 114 VIMTQLHAGGKFDQNSYKVSGGLHGVGVSDVNALSK 149
>gi|1346245|sp|P48373|GYRB_STRPN DNA GYRASE SUBUNIT B >gi|1052804|emb|CAA58771| (X83917) DNA gyrase B subunit [Streptococcus pneumoniae] Length = 648 Score = 49.2 bits (115), Expect = 3e-05 Identities = 44/152 (28%), Positives = 67/152 (43%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + +RP YIGS E GL+ + EI+ N+ D + Sbjct: 24 LEAVRMRPGMYIGSTSKE---------------------GLHHLVWEIVDNSIDEALAGF 62 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 S I+V I E + I+V ++G GIPV I K E +F L + + KV+G Sbjct: 63 A-SHIQVFI-EPDDSITVVDDGRGIPVGIQEKTGRPAVETVFTVLHSGGKFGGGGYKVSG 120 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQ 79 G +G G + N S + V V K K++Y + Sbjct: 121 GLHGVGLSVVNALSTQLDVH-VHKNGKIHYQE 151
>gi|3914289|sp|Q59192|PARE_BACSU TOPOISOMERASE IV SUBUNIT B >gi|2558946 (AF024713) ParE [Bacillus subtilis] Length = 655 Score = 48.8 bits (114), Expect = 4e-05 Identities = 44/163 (26%), Positives = 69/163 (41%), Gaps = 2/163 (1%) Query: 561 EELYQKKTPIEHILLRPDTYIGSVECEEKN--MYILSDNKIVSKNITFVPGLYKIFDEII 388 E+ Q +E + RP YIGS + + +Y + DN + DE++ Sbjct: 11 EDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSV---------------DEVL 55 Query: 387 VNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSS 208 D+ I +K+ K+ ISV + G G+P +H K PE+I L Sbjct: 56 AGHGDHII-------VKI---HKDNSISVQDRGRGMPTGMHKLGKP-TPEVILTVLHAGG 104 Query: 207 NYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRF 73 + K +GG +G GA + N SE V +++ Y QRF Sbjct: 105 KFGQGGYKTSGGLHGVGASVVNALSEWLTVTI--ERDGFVYQQRF 147
>gi|1346244|sp|P20832|GYRB_STAAU DNA GYRASE SUBUNIT B >gi|538882|pir||A40585 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Staphylococcus aureus >gi|296395|emb|CAA50570| (X71437) DNA gyrase [Staphylococcus aureus] >gi|540541|dbj|BAA01369| (D10489) DNA gyrase B [Staphylococcus aureus] Length = 644 Score = 48.8 bits (114), Expect = 4e-05 Identities = 44/158 (27%), Positives = 69/158 (42%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + EI+ N+ D + Sbjct: 25 LEAVRKRPGMYIGS---------------------TSERGLHHLVWEIVDNSIDEALA-G 62 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 + I+V I EK+ I V +NG GIPV I K E+I L + KV+G Sbjct: 63 YANQIEVVI-EKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 G +G G+ + N S++ +E + + Y+Q + K + Sbjct: 122 GLHGVGSSVVNALSQD--LEVYVHRNETIYHQAYKKGV 157
>gi|3914288|sp|Q59189|PARE_BORBU TOPOISOMERASE IV SUBUNIT B >gi|2687909 (AE001117) DNA topoisomerase IV (parE) [Borrelia burgdorferi] Length = 599 Score = 48.8 bits (114), Expect = 4e-05 Identities = 53/194 (27%), Positives = 79/194 (40%) Query: 582 MKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKI 403 MK Q E + +EHI LR YIG L D + G+Y + Sbjct: 1 MKTQNYDESKIITLSSLEHIRLRSGMYIGR----------LGDGSNID------DGIYVL 44 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 EII N+ D I ++ I ++N +IS+ + G GIP+ E + V Sbjct: 45 IKEIIDNSIDEFIMGYGN---EIFIKKENNLISIRDYGRGIPLG-KVIESVSV------- 93 Query: 222 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNMSKREDP 43 + T + Y+DD + + G NG G K N S +F+V + + K + RE Sbjct: 94 INTGAKYNDDVFQFSVGLNGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESRE-- 151 Query: 42 VIKNMKDAGVKEEF 1 IK+ G EF Sbjct: 152 -IKSSDKDGTYVEF 164
>gi|153085 (M86227) DNA gyrase B subunit [Staphylococcus aureus] Length = 640 Score = 48.4 bits (113), Expect = 6e-05 Identities = 44/158 (27%), Positives = 66/158 (40%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS + E + DN I DE + A NKI Sbjct: 25 LEAVRKRPGMYIGSTQRELHISVEIVDNSI---------------DEALAGYA-NKIEV- 67 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 + EK+ I V +NG GIPV I K E+I L + KV+G Sbjct: 68 --------VIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSG 119 Query: 174 GRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 G +G G+ + N S++ +E + + Y+Q + K + Sbjct: 120 GLHGVGSSVVNALSQD--LEVYVHRNETIYHQAYKKGV 155
>gi|629198|pir||S44198 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Mycobacterium tuberculosis >gi|474435|emb|CAA55486| (X78888) DNA gyrase subunit B [Mycobacterium tuberculosis] >gi|1552558|emb|CAB02426| (Z80233) gyrB [Mycobacterium tuberculosis] Length = 714 Score = 47.3 bits (110), Expect = 1e-04 Identities = 37/140 (26%), Positives = 59/140 (41%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ NA D + Sbjct: 62 LEAVRKRPGMYIGS---------------------TGERGLHHLIWEVVDNAVDEAMAGY 100 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 + V +++ G + V ++G GIPV HA I +++ QL +D D ++G Sbjct: 101 ATTVNVVLLED--GGVEVADDGRGIPVATHASG-IPTVDVVMTQLHAGGKFDSDAYAISG 157 Query: 174 GRNGYGAKLCNIFSEEFVVE 115 G +G G + N S VE Sbjct: 158 GLHGVGVSVVNALSTRLEVE 177
>gi|1708095|sp|P41514|GYRB_MYCTU DNA GYRASE SUBUNIT B >gi|1107468 (L27512) gyrase B [Mycobacterium tuberculosis] Length = 686 Score = 47.3 bits (110), Expect = 1e-04 Identities = 37/140 (26%), Positives = 59/140 (41%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ NA D + Sbjct: 34 LEAVRKRPGMYIGS---------------------TGERGLHHLIWEVVDNAVDEAMAGY 72 Query: 354 KMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVTG 175 + V +++ G + V ++G GIPV HA I +++ QL +D D ++G Sbjct: 73 ATTVNVVLLED--GGVEVADDGRGIPVATHASG-IPTVDVVMTQLHAGGKFDSDAYAISG 129 Query: 174 GRNGYGAKLCNIFSEEFVVE 115 G +G G + N S VE Sbjct: 130 GLHGVGVSVVNALSTRLEVE 149
>gi|1708094|sp|P48355|GYRB_MYCSM DNA GYRASE SUBUNIT B >gi|1213062|emb|CAA63917| (X94224) DNA gyrase subunit B [Mycobacterium smegmatis] Length = 675 Score = 47.3 bits (110), Expect = 1e-04 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 2/153 (1%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ NA D + Sbjct: 23 LEAVRKRPGMYIGS---------------------TGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 +VD+ +G + V ++G GIPV++HA + +++ QL +D + V+ Sbjct: 62 ---ATRVDVKIHADGSVEVRDDGRGIPVEMHATGMPTI-DVVMTQLHAGGKFDGETYAVS 117 Query: 177 GGRNGYGAKLCNIFSEEFVVETV-DKKEKLYYYQR 76 GG +G G + N S + D E YY R Sbjct: 118 GGLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDR 152
>gi|1226021|emb|CAA58884| (X84077) DNA topoisomerase (ATP-hydrolysing) [Mycobacterium smegmatis] Length = 675 Score = 47.3 bits (110), Expect = 1e-04 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 2/153 (1%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ NA D + Sbjct: 23 LEAVRKRPGMYIGS---------------------TGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 +VD+ +G + V ++G GIPV++HA + +++ QL +D + V+ Sbjct: 62 ---ATRVDVKIHADGSVEVRDDGRGIPVEMHATGMPTI-DVVMTQLHAGGKFDGETYAVS 117 Query: 177 GGRNGYGAKLCNIFSEEFVVETV-DKKEKLYYYQR 76 GG +G G + N S + D E YY R Sbjct: 118 GGLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDR 152
>gi|1321898|emb|CAA63253| (X92503) gyrB [Mycobacterium smegmatis] Length = 706 Score = 47.3 bits (110), Expect = 1e-04 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 2/153 (1%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS T GL+ + E++ NA D + Sbjct: 54 LEAVRKRPGMYIGS---------------------TGERGLHHLIWEVVDNAVDEAMAGF 92 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 +VD+ +G + V ++G GIPV++HA + +++ QL +D + V+ Sbjct: 93 ---ATRVDVKIHADGSVEVRDDGRGIPVEMHATGMPTI-DVVMTQLHAGGKFDGETYAVS 148 Query: 177 GGRNGYGAKLCNIFSEEFVVETV-DKKEKLYYYQR 76 GG +G G + N S + D E YY R Sbjct: 149 GGLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDR 183
>gi|3860790|emb|CAA14690| (AJ235271) DNA GYRASE SUBUNIT B (gyrB1) [Rickettsia prowazekii] Length = 662 Score = 46.5 bits (108), Expect = 2e-04 Identities = 44/164 (26%), Positives = 75/164 (44%), Gaps = 8/164 (4%) Query: 579 KKQKTVEELYQKKT-----PIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPG 415 KK K V Y K +E + RP YIG + Sbjct: 11 KKNKIVYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDSN---------------------A 49 Query: 414 LYKIFDEIIVNAADNKIRD-SKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAK--EKIYV 244 ++ + E++ NA D + + + IK+ D I++++NG GIP+ H K +K + Sbjct: 50 MHHLVSEVLDNAMDEAVAGFASIIMIKMHQDHS---ITIFDNGRGIPIDNHPKFPDKSAL 106 Query: 243 PELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L + S + ++ +GG +G G + N S+ F ++ V K+ KLY Sbjct: 107 -EVILTTLHSGSKFSNNVYHTSGGLHGVGISVVNALSKHFKIK-VYKQGKLY 156
>gi|1078799|pir||S47661 topoisomerase II - Plasmodium falciparum Length = 160 Score = 46.1 bits (107), Expect = 3e-04 Identities = 19/29 (65%), Positives = 25/29 (85%) Query: 192 EKKVTGGRNGYGAKLCNIFSEEFVVETVD 106 E ++TGGRNG+GAKL NIFS+EF+V+ D Sbjct: 2 EDRITGGRNGFGAKLTNIFSKEFIVQCGD 30
>gi|3550425 (AF085684) DNA gyrase B subunit [Methylovorus sp. strain SS1] Length = 799 Score = 45.3 bits (105), Expect = 5e-04 Identities = 31/96 (32%), Positives = 48/96 (49%), Gaps = 4/96 (4%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKE----KI 250 GL+ + E++ NA D + IKV I N V S+ +NG GIP I + K Sbjct: 34 GLHHMVFEVLDNAIDEALA-GHCDDIKVIIHPDNSV-SISDNGRGIPTDIKQDDIKAVKR 91 Query: 249 YVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSE 130 E++ +L +D + KV+GG +G G + N S+ Sbjct: 92 SAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSVVNALSD 131
>gi|1405461|emb|CAA97606| (Z73234) GrlB [Bacillus subtilis] >gi|2634192|emb|CAB13692| (Z99113) DNA gyrase-like protein (subunit B) [Bacillus subtilis] Length = 627 Score = 44.9 bits (104), Expect = 6e-04 Identities = 36/115 (31%), Positives = 53/115 (45%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + EI+ N+ D + I V I + N ISV + G G+P +H K PE Sbjct: 10 GLHHLVYEIVDNSVDEVLAGHGDHII-VKIHKDNS-ISVQDRGRGMPTGMHKLGKP-TPE 66 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRF 73 +I L + K +GG +G GA + N SE V +++ Y QRF Sbjct: 67 VILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTI--ERDGFVYQQRF 119
>gi|3914290|sp|Q59961|PARE_STRPN TOPOISOMERASE IV SUBUNIT B >gi|1490401|emb|CAA91550| (Z67739) DNA topoisomerase IV [Streptococcus pneumoniae] Length = 647 Score = 44.5 bits (103), Expect = 8e-04 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVP 241 GL+ + EI+ NA D + ++D+ K+G ++V ++G G+P +HA I Sbjct: 40 GLHHLVWEIVDNAVDEALSGFGD---RIDVTINKDGSLTVQDHGRGMPTGMHAM-GIPTV 95 Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRF 73 E+IF L + K +GG +G G+ + N S VE ++ Y QRF Sbjct: 96 EVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEIT--RDGAVYKQRF 149
>gi|938029|dbj|BAA05969| (D28808) DNA gyrase subunit B [Mycoplasma capricolum] Length = 104 Score = 43.0 bits (99), Expect = 0.002 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 579 KKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIF 400 + +K E Q +E + RP YIGS +DNK GL+ + Sbjct: 3 ENKKYDESAIQVLEGLEAVRKRPGMYIGS-----------TDNK----------GLHHLV 41 Query: 399 DEIIVNAADNKIRDSKMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQ 223 EI+ NA D + C ++D+ EK+ I+V +NG GIP +H K PE+IF Sbjct: 42 WEIVDNAIDEALAGY---CTQIDVILEKDNSITVIDNGRGIPTGMHKTGK-PTPEVIFSV 97 Query: 222 L 220 L Sbjct: 98 L 98
>gi|400731|sp|P31598|PARE_SALTY TOPOISOMERASE IV SUBUNIT B >gi|421248|pir||S33711 topoisomerase IV chain parE - Salmonella typhimurium >gi|154238 (L05544) topoisomerase IV subunit E [Salmonella typhimurium] Length = 630 Score = 41.8 bits (96), Expect = 0.006 Identities = 31/111 (27%), Positives = 57/111 (50%), Gaps = 8/111 (7%) Query: 420 PGLYK-------IFDEIIVNAADNKIRD-SKMSCIKVDIDEKNGVISVYNNGEGIPVKIH 265 PG+Y + E+I N+ D + +K + + D+ + V ++G G+PV IH Sbjct: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIH 79 Query: 264 AKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 +E + ELI +L + + + +GG +G G + N S+ V TV + ++Y Sbjct: 80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV-TVRRDGQVY 137
>gi|1708089|sp|P50074|GYBR_STRSH DNA GYRASE SUBUNIT B, NOVOBIOCIN-RESISTANT >gi|581742|emb|CAA78951| (Z17304) gyrase B (novobiocin-resistant) [Streptomyces spheroides] Length = 677 Score = 41.8 bits (96), Expect = 0.006 Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 1/101 (0%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDE-KNGVISVYNNGEGIPVKIHAKEKIYVP 241 GL+ + E++ N+ D + ++D+ +G + V +NG GIPV +H EK Sbjct: 55 GLHHLVQELVDNSVDEALAGV---ADRIDVTVLADGGVRVVDNGRGIPVGMHPVEKRPAV 111 Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVE 115 E++ L + V+GG +G G + N S E Sbjct: 112 EVVLTVLHAGGKFGGGGYGVSGGLHGVGLSVVNALSTRLSAE 153
>gi|4176381|dbj|BAA37153| (AB003429) topoisomerase IV subunit [Pseudomonas aeruginosa] Length = 629 Score = 41.8 bits (96), Expect = 0.006 Identities = 34/128 (26%), Positives = 59/128 (45%), Gaps = 7/128 (5%) Query: 420 PGLYK-------IFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHA 262 PG+Y + E+I N+ D + S ++V + + N + V ++G G+PV IH Sbjct: 22 PGMYTDTTRPNHLAQEVIDNSVDEALAGHAKS-VQVILHQDNS-LEVIDDGRGMPVDIHP 79 Query: 261 KEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYY 82 +E + EL +L + + + +GG +G G + N S VE K++ Y Sbjct: 80 EEGVPGVELTLIKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTR--VEVRVKRDANEYR 137 Query: 81 QRFTKNMSKREDPVI 37 F + VI Sbjct: 138 MTFADGFKDSDLEVI 152
>gi|322319|pir||S29682 DNA gyrase B, novobiocin-resistant - Streptomyces spheroides Length = 680 Score = 41.8 bits (96), Expect = 0.006 Identities = 27/101 (26%), Positives = 46/101 (44%), Gaps = 1/101 (0%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDE-KNGVISVYNNGEGIPVKIHAKEKIYVP 241 GL+ + E++ N+ D + ++D+ +G + V +NG GIPV +H EK Sbjct: 58 GLHHLVQELVDNSVDEALAGV---ADRIDVTVLADGGVRVVDNGRGIPVGMHPVEKRPAV 114 Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVE 115 E++ L + V+GG +G G + N S E Sbjct: 115 EVVLTVLHAGGKFGGGGYGVSGGLHGVGLSVVNALSTRLSAE 156
>gi|3914277|sp|O54479|PARE_CAUCR TOPOISOMERASE IV SUBUNIT B >gi|2749947 (U94697) DNA topoisomerase IV ParE subunit [Caulobacter crescentus] Length = 667 Score = 41.4 bits (95), Expect = 0.007 Identities = 33/116 (28%), Positives = 57/116 (48%), Gaps = 2/116 (1%) Query: 414 LYKIFDEIIVNAADNKIRD-SKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAK-EKIYVP 241 L+ +F E++ N+ D + +K +K+D D G +SV ++G G+PV H K Sbjct: 57 LHHLFAEVLDNSMDEAVAGFAKTIEVKLDAD---GFLSVKDDGRGMPVDPHPKYPGKSAL 113 Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTK 67 E+I L + + +GG +G GA + N SE VE ++ + Q F++ Sbjct: 114 EVIMTVLHAGGKFTGKAYETSGGLHGVGASVVNALSER--VEVTVWRDGFEHLQVFSR 169
>gi|1172018|sp|P43703|PARE_HAEIN TOPOISOMERASE IV SUBUNIT B >gi|1075356|pir||E64127 topoisomerase IV subunit B (parE) homolog - Haemophilus influenzae (strain Rd KW20) >gi|1574369 (U32828) topoisomerase IV, subunit B (parE) [Haemophilus influenzae Rd] Length = 632 Score = 41.4 bits (95), Expect = 0.007 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 420 PGLYK-------IFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHA 262 PG+Y + E+I N+ D + I+V + I V +NG G+PV IH Sbjct: 23 PGMYTDTTRPNHLAQEVIDNSVDEALAGFATK-IEVILHPDQS-IEVTDNGRGMPVDIHP 80 Query: 261 KEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYY 82 E + E+I +L + + + GG +G G + N SE ++ K Y Sbjct: 81 TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGISVVNALSERVDIQV---KRNGEIY 137 Query: 81 QRFTKNMSKRED 46 + +N SK E+ Sbjct: 138 KIAFENGSKVEE 149
>gi|1708090|sp|P50075|GYBS_STRSH DNA GYRASE SUBUNIT B, NOVOBIOCIN-SENSITIVE >gi|322320|pir||S29683 DNA gyrase B, novobiocin-sensitive - Streptomyces spheroides >gi|581743|emb|CAA78952| (Z17305) gyrase B (novobiocin-sensitive) [Streptomyces spheroides] Length = 684 Score = 41.0 bits (94), Expect = 0.009 Identities = 30/101 (29%), Positives = 44/101 (42%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ N+ D + I V I GV V +NG GIPV I E E Sbjct: 55 GLHHLVTEVVDNSVDEALA-GHADTIDVTILADGGV-RVVDNGRGIPVGIVPSEGKPAVE 112 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVE 115 ++ L + V+GG +G G + N S + VE Sbjct: 113 VVLTVLHAGGKFGGGGYSVSGGLHGVGVSVVNALSTKVAVE 153
>gi|96261|pir||B36075 parE protein - Escherichia coli >gi|147108 (M58409) topoisomerase IV subunit [Escherichia coli] Length = 601 Score = 40.6 bits (93), Expect = 0.012 Identities = 28/101 (27%), Positives = 51/101 (49%), Gaps = 8/101 (7%) Query: 420 PGLYK-------IFDEIIVNAADNKIRD-SKMSCIKVDIDEKNGVISVYNNGEGIPVKIH 265 PG+Y + E+I N+ D + +K + + D+ + V ++G G+PV IH Sbjct: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIH 79 Query: 264 AKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVV 118 +E + ELI +L + + + +GG +G G + N S+ V Sbjct: 80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV 128
>gi|436027 (L27063) DNA gyrase [Streptomyces coelicolor] >gi|1093584|prf||2104262D DNA gyrase [Streptomyces coelicolor] Length = 686 Score = 40.6 bits (93), Expect = 0.012 Identities = 30/101 (29%), Positives = 43/101 (41%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ N+ D + I V I GV V +NG GIPV I E E Sbjct: 62 GLHHLVQEVVDNSVDEALA-GHADTIDVTILPDGGV-RVVDNGRGIPVGIVPSEGKPAVE 119 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVE 115 ++ L + V+GG +G G + N S VE Sbjct: 120 VVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVE 160
>gi|464346|sp|P20083|PARE_ECOLI TOPOISOMERASE IV SUBUNIT B >gi|882560 (U28377) topoisomerase IV subunit [Escherichia coli] >gi|1789408 (AE000385) DNA topoisomerase IV subunit B [Escherichia coli] Length = 630 Score = 40.6 bits (93), Expect = 0.012 Identities = 28/101 (27%), Positives = 51/101 (49%), Gaps = 8/101 (7%) Query: 420 PGLYK-------IFDEIIVNAADNKIRD-SKMSCIKVDIDEKNGVISVYNNGEGIPVKIH 265 PG+Y + E+I N+ D + +K + + D+ + V ++G G+PV IH Sbjct: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIH 79 Query: 264 AKEKIYVPELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVV 118 +E + ELI +L + + + +GG +G G + N S+ V Sbjct: 80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV 128
>gi|544466|sp|P35886|GYRB_STRCO DNA GYRASE SUBUNIT B Length = 686 Score = 40.6 bits (93), Expect = 0.012 Identities = 30/101 (29%), Positives = 43/101 (41%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKIYVPE 238 GL+ + E++ N+ D + I V I GV V +NG GIPV I E E Sbjct: 62 GLHHLVQEVVDNSVDEALA-GHADTIDVTILPDGGV-RVVDNGRGIPVGIVPSEGKPAVE 119 Query: 237 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVE 115 ++ L + V+GG +G G + N S VE Sbjct: 120 VVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVE 160
>gi|4033404|sp|Q59533|GYRB_MYCLE DNA GYRASE SUBUNIT B >gi|1262356|emb|CAA94712| (Z70722) DNA gyrase B [Mycobacterium leprae] Length = 697 Score = 39.9 bits (91), Expect = 0.021 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEK---NGVISVYNNGEGIPVKIHAKEKIY 247 GL+ + E++ N+ D M+ +D + +G + V +NG GIPV +HA + Sbjct: 59 GLHHLIWEVVDNSVDEA-----MAGYATQVDVRLFDDGSVEVADNGRGIPVAVHA-TGVP 112 Query: 246 VPELIFGQLLTSSNY--DDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRF 73 +++ QL + D V+GG +G G + N S VD K Y + +F Sbjct: 113 TVDVVMTQLHAGGKFGGKDSGYNVSGGLHGVGVSVVNALSTRV---EVDIKRDGYEWSQF 169
>gi|3036887|emb|CAA18520| (AL022374) putative DNA gyrase subunit B [Streptomyces coelicolor] Length = 707 Score = 39.5 bits (90), Expect = 0.028 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 1/140 (0%) Query: 534 IEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDS 355 +E + RP YIGS + GL EII N+ D + Sbjct: 34 LEAVRKRPGMYIGSTDSR---------------------GLMHCLWEIIDNSVDEALGGY 72 Query: 354 KMSCIKVDID-EKNGVISVYNNGEGIPVKIHAKEKIYVPELIFGQLLTSSNYDDDEKKVT 178 C +++ + + V +NG GIPV + K + E++ +L + + Sbjct: 73 ---CDHIEVILHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGAYAAS 129 Query: 177 GGRNGYGAKLCNIFSEEFVVE 115 GG +G GA + N S +E Sbjct: 130 GGLHGVGASVVNALSARLDIE 150
>gi|2267074 (AF007282) gyrase B subunit [Pseudoalteromonas rubra] Length = 423 Score = 34.8 bits (78), Expect = 0.71 Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ KLY Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKL-TIRREGKLY 50
>gi|2267078 (AF007284) gyrase B subunit [Pseudoalteromonas undina] Length = 423 Score = 34.8 bits (78), Expect = 0.71 Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ KLY Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKL-TIRREGKLY 50
>gi|2649399 (AE001022) signal-transducing histidine kinase [Archaeoglobus fulgidus] Length = 456 Score = 34.8 bits (78), Expect = 0.71 Identities = 22/71 (30%), Positives = 41/71 (56%) Query: 459 SDNKIVSKNITFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGI 280 ++N +VS N GL + + I+ NA + + ++V +E+NG++ V + G+G+ Sbjct: 344 AENVVVSAN----EGLRAVLNNILQNAM---VHGGGKARVEVLANERNGIVRVIDYGKGV 396 Query: 279 PVKIHAKEKIY 247 P +I KEKI+ Sbjct: 397 PDEI--KEKIF 405
>gi|2267070 (AF007280) gyrase B subunit [Pseudoalteromonas luteoviolacea] Length = 420 Score = 34.8 bits (78), Expect = 0.71 Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N SE+ ++ +++ + Q++T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEK--LQLTIRRDGQVHQQKYTMGV 58 Query: 60 SKREDPVIKNMKDAGVKEEF 1 VI + G + F Sbjct: 59 PDAPLAVIGEAESTGTELRF 78
>gi|3758853|emb|CAB11138| (Z98551) predicted using hexExon; MAL3P6.13 (PFC0770c), Kinesin-related protein, len: 1620 aa; Similarity to kinesins. H.sapiens kinesin-related protein (SW:EG5_HUMAN) BLAST Score: 745, sum P(3) = 2.8e-90; 33% identity in 649... Length = 1619 Score = 34.4 bits (77), Expect = 0.93 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 15/117 (12%) Query: 585 SMKKQKTVEELYQKKTPIE---------HILLRPDTYIGSVECEEKNMYILSDNKIVSKN 433 ++ ++ ++LY K+ I+ HI L + +C EK ++ D KI++ N Sbjct: 887 NLDNHESEKKLYNAKSLIQYIKSICNIFHIFLNESFMLLEKKCHEKYIHWDKDKKIMNDN 946 Query: 432 ITFVPGLYKIFDEIIVNAADNKIRDSKMSCIKVDIDE------KNGVISVYNNGEGIPVK 271 I ++ Y +F++ DN I ++ I DI E K+ + + N E I K Sbjct: 947 IEYIYKKYDVFEK-----EDNIIINNYKKMINEDIQEFKENILKDIELLINKNVEDIYEK 1001 Query: 270 IHAKEKIYVPEL 235 ++ K + EL Sbjct: 1002 MNNKFDLLNKEL 1013
>gi|2267056 (AF007273) gyrase B subunit [Marinomonas communis] Length = 422 Score = 34.4 bits (77), Expect = 0.93 Identities = 19/51 (37%), Positives = 27/51 (52%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE V T+ K K+Y Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSET-VTLTIRKNGKVY 50
>gi|2267060 (AF007275) gyrase B subunit [Pseudoalteromonas aurantia] Length = 420 Score = 34.4 bits (77), Expect = 0.93 Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N SE+ ++ +++ + Q++T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEK--LQLTIRRDGKVHQQKYTMGV 58 Query: 60 SKREDPVIKNMKDAGVKEEF 1 VI + G + F Sbjct: 59 PDAPLGVIGEAESTGTELRF 78
>gi|2267080 (AF007285) gyrase B subunit [Pseudoalteromonas peptidysin] Length = 420 Score = 34.4 bits (77), Expect = 0.93 Identities = 22/80 (27%), Positives = 39/80 (48%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N SE+ + T+ + KL + Q++T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQL-TIRRDGKL-HQQKYTMGV 58 Query: 60 SKREDPVIKNMKDAGVKEEF 1 +I + G + F Sbjct: 59 PDAPLGIIGEAETTGTELRF 78
>gi|2267062 (AF007276) gyrase B subunit [Pseudoalteromonas carrageenovora] Length = 423 Score = 34.0 bits (76), Expect = 1.2 Identities = 23/80 (28%), Positives = 40/80 (49%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N SE+ + TV ++ KL + Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKL-TVRREGKL-HEQFYTMGV 58 Query: 60 SKREDPVIKNMKDAGVKEEF 1 +I + + G + F Sbjct: 59 PDAPLAIIGDSETTGTELRF 78
>gi|2267058 (AF007274) gyrase B subunit [Pseudoalteromonas atlantica] Length = 423 Score = 33.6 bits (75), Expect = 1.6 Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ KL+ Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTL-TIRREGKLH 50
>gi|2267066 (AF007278) gyrase B subunit [Pseudoalteromonas espejiana] Length = 423 Score = 33.6 bits (75), Expect = 1.6 Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ KL+ Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTL-TIRREGKLH 50
>gi|2267076 (AF007283) gyrase B subunit [Pseudoalteromonas haloplanktis subsp. tetraodonis] Length = 422 Score = 33.6 bits (75), Expect = 1.6 Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ KL+ Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTL-TIRREGKLH 50
>gi|232220|sp|P29435|GYRB_BUCAP DNA GYRASE SUBUNIT B >gi|551761 (M80817) gyrB [Buchnera aphidicola] Length = 91 Score = 33.6 bits (75), Expect = 1.6 Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 417 GLYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIPVKIHAKEKI 250 GL+ + EI+ N+ D + IKV I N V S+ ++G GIP IH +EKI Sbjct: 35 GLHHMVFEIVDNSIDEALAGFCKE-IKVVIHSDNSV-SIKDDGRGIPTDIHPEEKI 88
>gi|2267068 (AF007279) gyrase B subunit [Pseudoalteromonas haloplanktis subsp. haloplanktis] Length = 422 Score = 33.2 bits (74), Expect = 2.1 Identities = 23/80 (28%), Positives = 40/80 (49%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ KL + Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKL-TIRREGKL-HEQFYTMGV 58 Query: 60 SKREDPVIKNMKDAGVKEEF 1 VI + + G + F Sbjct: 59 PDAPLAVIGDSETNGTEIRF 78
>gi|2120436|pir||I40294 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) IV beta chain - Lyme disease spirochete (fragment) >gi|520781 (L32861) topoisomerase IV beta-subunit [Borrelia burgdorferi] Length = 83 Score = 33.2 bits (74), Expect = 2.1 Identities = 30/102 (29%), Positives = 43/102 (41%) Query: 582 MKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSKNITFVPGLYKI 403 MK Q E + +EHI LR YIG L D + G+Y + Sbjct: 1 MKTQNYDESKIITLSSLEHIRLRSGMYIGR----------LGDGSNID------DGIYVL 44 Query: 402 FDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNGEGIP 277 EII N+ D I ++ I ++N +IS+ + G GIP Sbjct: 45 IKEIIDNSIDEFIMGYGN---EIFIKKENNLISIRDYGRGIP 83
>gi|2196800 (AF005674) DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 33.2 bits (74), Expect = 2.1 Identities = 23/74 (31%), Positives = 39/74 (52%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L+ Y+D+ KV+GG +G G + N S++ + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLMALKKYEDNSYKVSGGLHGVGVSVVNALSKKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|2267072 (AF007281) gyrase B subunit [Pseudoalteromonas nigrifaciens] Length = 423 Score = 32.8 bits (73), Expect = 2.7 Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ KL+ Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKL-TIRREGKLH 50
>gi|2196838 (AF005693) DNA gyrase beta-subunit [Shewanella hanedai] Length = 419 Score = 32.8 bits (73), Expect = 2.7 Identities = 23/80 (28%), Positives = 37/80 (45%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S + + TV + KL Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQL-TVRRDGKL-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDAGVKEEF 1 I + + G + F Sbjct: 59 PDEPIKAIGDSTNTGTELRF 78
>gi|2353020 (AF014947) gyrase beta subunit [Shewanella frigidimarina] Length = 419 Score = 32.5 bits (72), Expect = 3.6 Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S++ + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLQL-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|2853303 (AF007287) gyrase B subunit [Vibrio parahaemolyticus] Length = 419 Score = 32.5 bits (72), Expect = 3.6 Identities = 15/41 (36%), Positives = 23/41 (55%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVV 118 E+I L +DD+ KV+GG +G G + N SE+ V+ Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVL 41
>gi|2196808 (AF005678) DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.1 bits (71), Expect = 4.7 Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S++ + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|2196810 (AF005679) DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.1 bits (71), Expect = 4.7 Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S++ + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|2196812 (AF005680) DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 32.1 bits (71), Expect = 4.7 Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S++ + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|2353018 (AF014946) gyrase beta subunit [Shewanella gelidimarina] Length = 419 Score = 32.1 bits (71), Expect = 4.7 Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N S + V T+ + KLY Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSK-VQLTIRRDGKLY 50
>gi|4262599|gb|AAD14723| (AF125956) similar to other C. elegans chemoreceptor-like proteins [Caenorhabditis elegans] Length = 353 Score = 32.1 bits (71), Expect = 4.7 Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 3/43 (6%) Query: 268 YFHRYTLSIIINRYYTILL---INIHFNTTHLTISYFIICCINNYF 396 YF +++++ Y LL +N+ F L I+YF+I CI N F Sbjct: 193 YFKNTVFVLVVDKNYITLLGRIMNVFFVIEILQINYFVIYCIYNLF 238
>gi|808838 (M23871) unknown protein [Saccharomyces cerevisiae] Length = 106 Score = 32.1 bits (71), Expect = 4.7 Identities = 13/35 (37%), Positives = 21/35 (59%) Query: 301 NRYYTILLINIHFNTTHLTISYFIICCINNYFIKY 405 NR Y I L N+H + HL ++Y++I C + +Y Sbjct: 15 NRCYEIPLKNVHRSARHLKLAYYLILCCEHAKCEY 49
>gi|2267064 (AF007277) gyrase B subunit [Pseudoalteromonas citrea] Length = 422 Score = 31.7 bits (70), Expect = 6.2 Identities = 16/51 (31%), Positives = 29/51 (56%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLY 88 E+I L +DD+ KV+GG +G G + N SE+ + T+ ++ K++ Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQL-TIRREGKVH 50
>gi|2196790 (AF005669) DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 31.7 bits (70), Expect = 6.2 Identities = 23/74 (31%), Positives = 37/74 (49%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S + + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|2353022 (AF014948) gyrase beta subunit [Shewanella putrefaciens] Length = 419 Score = 31.7 bits (70), Expect = 6.2 Identities = 23/74 (31%), Positives = 37/74 (49%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S + + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|2905602 (AF039057) gyrase subunit B [Shewanella putrefaciens] Length = 419 Score = 31.7 bits (70), Expect = 6.2 Identities = 23/74 (31%), Positives = 37/74 (49%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L +DD+ KV+GG +G G + N S + + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69
>gi|731615|sp|P38732|YHD9_YEAST HYPOTHETICAL 67.5 KD PROTEIN IN CBP2 5'REGION >gi|626581|pir||S48929 hypothetical protein YHL039w - yeast (Saccharomyces cerevisiae) >gi|2289868 (U11583) YHL039w gene product [Saccharomyces cerevisiae] Length = 585 Score = 31.3 bits (69), Expect = 8.1 Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 36/177 (20%) Query: 537 PIEHILLRPDTYIGSVECEEKNMY------ILSDNKIVSKNITFVPGLYKIFDEIIVNAA 376 P+ +LL Y+ ++ EE I +VS+ + F YK F I ++ Sbjct: 347 PLPPVLLALFAYLSKLKSEETPTVRSVLEGIDQLTSVVSQRLLF----YKNFK--IKTSS 400 Query: 375 DNKIRDSKMSCIKVDIDEKNGVIS------------VYNNGEGIPVK---IHAKEKIYVP 241 K+R + IK+ + +++ +Y+N + + I +KI+ Sbjct: 401 TQKLRPHVIKLIKLYYQDNKKILNATTEKLSVLQKKIYSNNKEFSLSFKTIFKNDKIFAN 460 Query: 240 EL--IFG-----QLLTSSNYDDD-----EKKVTGGRNGYGAKLCNIF---SEEFVVETVD 106 L +FG L+T +D K + N G + F S+ V+E D Sbjct: 461 SLLLVFGAINYEDLITKDCLNDALLLWIVKLINDKSNNQGGFIKQTFKEVSDSIVIEKED 520 Query: 105 KKEKLYYYQRFTKNMSKREDPVIKNMKDAGVKE 7 E L +Y+++ N+S+R P I ++ D G+++ Sbjct: 521 VMEFLPFYKKYFPNLSER-IPEIYSVGDWGIRQ 552
>gi|575306|emb|CAA80467| (Z22813) NisK [Lactococcus lactis] Length = 447 Score = 31.3 bits (69), Expect = 8.1 Identities = 32/109 (29%), Positives = 48/109 (43%), Gaps = 5/109 (4%) Query: 615 VLXKYYNF*PSMKKQKTVEELYQKKTPIEHILLRPDTYIGSVECEEKNMYILSDNKIVSK 436 V KY+N S K E Y+ + +E L+ SVE EE + D ++V K Sbjct: 276 VFDKYFNTMISYTKLLNDENDYKARISLEDFLIDL-----SVELEELSTTYQVDYQLVKK 330 Query: 435 -NITFVPG----LYKIFDEIIVNAADNKIRDSKMSCIKVDIDEKNGVISVYNNG 289 ++T G L + I VNA K+ + + DEK ++NNG Sbjct: 331 TDLTTFYGNTLALSRALINIFVNACQYAKEGEKIVSLSIYDDEKYLYFEIWNNG 384
>gi|2196798 (AF005673) DNA gyrase beta-subunit [Shewanella putrefaciens] Length = 419 Score = 31.3 bits (69), Expect = 8.1 Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 240 ELIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSEEFVVETVDKKEKLYYYQRFTKNM 61 E+I L+ NY+ KV+GG +G G + N S++ + T+ + K+ Y Q +T + Sbjct: 1 EVIMTVLVALGNYEAHSYKVSGGLHGVGVSVVNALSKKLQM-TIRRAGKV-YEQFYTHGV 58 Query: 60 SKREDPVIKNMKDA 19 D IK + DA Sbjct: 59 ---PDAPIKEIGDA 69 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 12, 1999 12:54 PM Number of letters in database: 112,640,273 Number of sequences in database: 368,476 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 121713764 Number of Sequences: 368476 Number of extensions: 2346182 Number of successful extensions: 6522 Number of sequences better than 10.0: 340 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 44 Number of HSP's that attempted gapping in prelim test: 6309 Number of HSP's gapped (non-prelim): 182 length of query: 261 length of database: 112640273 effective HSP length: 54 effective length of query: 206 effective length of database: 92742569 effective search space: 19104969214 effective search space used: 19104969214 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 68 (30.9 bits)