BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14VII-54F
         (705 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3136056|emb|CAA19115| (AL023592) RanBP7/importin-beta/Cse1p s...    63  2e-09
gi|2688609 (AE001168) B. burgdorferi predicted coding region BB0...    34  1.1
gi|3093352|emb|CAA75488| (Y15189) NADH dehydrogenase subunit 4 [...    34  1.4
gi|3877937|emb|CAA88602| (Z48716) similarity to a transmembranou...    33  2.4
gi|2429549 (AF025472) No definition line found [Caenorhabditis e...    32  3.2
gi|453515 (L28677) ORF1 [Tetrahymena pyriformis]                       32  3.2
gi|133636|sp|P14240|RRPO_LYCVA RNA POLYMERASE >gi|67126|pir||RRX...    32  4.2
gi|4582459|gb|AAD24843|AC007071_15 (AC007071) putative RanBP7/im...    32  4.2
gi|4493896|emb|CAB39005| (AL034558) predicted using hexExon; MAL...    31  7.2
gi|2688097 (AE001130) B. burgdorferi predicted coding region BB0...    31  7.2


>gi|3136056|emb|CAA19115| (AL023592) RanBP7/importin-beta/Cse1p superfamily protein [Schizosaccharomyces pombe] Length = 1029 Score = 62.8 bits (150), Expect = 2e-09 Identities = 51/209 (24%), Positives = 105/209 (49%), Gaps = 14/209 (6%) Query: 67 NTANGLFSDILEKISND----DFNRIFDFLLSILQEYDNIKTLE-SAKKAYASLFLITNM 231 N+A+ S L K+++ F I F IL +Y E + ++ +L ++ + Sbjct: 388 NSADVAASRFLVKLASKRKKYTFMGILSFASDILNQYAASPPNEKNPRQKEGALRMVAAV 447 Query: 232 ARQIISLRKD---MLSGFLV-FVINNINSPYQFITSQCCYTLQFFDSKHVSPELNV-NAF 396 + I+S M+ FLV V+ SP ++ S+ C + F S + + NA+ Sbjct: 448 SNSILSKNSPVAGMMQDFLVAHVMPEFTSPVGYLRSRACEMINRFSEIDWSDKSQLLNAY 507 Query: 397 NTIMALINSGNEIFKVDAALTILFFLDCQQVRLIMDSQIPVIIQTLIYCGNKYDLESCND 576 ++ + + ++ AAL + + +V +M + +P+I+Q L++ N+ D+++ + Sbjct: 508 QAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTAHVPIIMQNLLFLANEVDIDALSS 567 Query: 577 GLETIMDSFPEKI----SQYAPELTATLSKMILENLNEEENYD 693 +E + SF ++ SQ A +L T K++ E ++E D Sbjct: 568 CMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQETMDESTTVD 610
>gi|2688609 (AE001168) B. burgdorferi predicted coding region BB0675 [Borrelia burgdorferi] Length = 287 Score = 34.0 bits (76), Expect = 1.1 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Query: 22 NYIKMKYSYFCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQ--EYDNIKTLESAK 195 NY+K IKN D+++ + + I F+LS ++ +++ +K L S + Sbjct: 34 NYLKENKKTIATFIKNDFESEIKDLIQYVKDKTDIMITPFVLSGIEAIDFNIVKPLFSKE 93 Query: 196 KAYASLFLITNMARQIISLRKDML-------SGFLVFVINNINSPYQFITSQCCYTLQFF 354 L LI N + SLRK+ +G++ F IN + ++ S Y +Q Sbjct: 94 LTKNDLNLIFNFVKVNSSLRKEFFYNFNTISNGYITFYINKL---FEGKNSYTIYLIQKE 150 Query: 355 DSKHVSPELNVNAFNTIMAL 414 + S ++ N ++ L Sbjct: 151 NKALYSSDIIKNYIKILLLL 170
>gi|3093352|emb|CAA75488| (Y15189) NADH dehydrogenase subunit 4 [Myxine glutinosa] Length = 458 Score = 33.6 bits (75), Expect = 1.4 Identities = 24/80 (30%), Positives = 39/80 (48%) Query: 296 LLITKTKNPESISFLKEIICLAIFVIRNKEAYAFLADSNVFMLSYS*SMLNKKSNILLKS 117 +++T P SI+F+ EI ++ + + + FLA + V +YS SM L K Sbjct: 362 IILTNLAMPPSINFISEITIMSSLFLWSPLTFPFLALTMVITTTYSMSMFMLAQGKLSKM 421 Query: 116 SFDIFSKISENKPLAVFLML 57 + I S S + L +FL L Sbjct: 422 T-KILSPFSTREHLTLFLHL 440
>gi|3877937|emb|CAA88602| (Z48716) similarity to a transmembranous region of ubiquinol-cytochrome-C reductase (PIR accession number S38960); cDNA EST EMBL:T00461 comes from this gene; cDNA EST EMBL:D27071 comes from this gene; cDNA EST EMBL:D27070 comes... >gi|3881715|emb|CAA88990| (Z49132) similarity to a transmembranous region of ubiquinol-cytochrome-C reductase (PIR accession number S38960); cDNA EST EMBL:T00461 comes from this gene; cDNA EST EMBL:D27071 comes from this gene; cDNA EST EMBL:D27070 comes... Length = 1192 Score = 32.8 bits (73), Expect = 2.4 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 13 YPENYIKMKYSYFCINI--KNTANGLFSDILEKISNDDFNR-IFDFLLSILQEY 165 Y + + +K+ YF ++ KN+ N D+ EK+S +D +R IF F IL + Sbjct: 1138 YVDETLFLKFMYFLMDFFFKNSNNNTHKDLYEKLSLNDIDRYIFSFFSQILYSF 1191
>gi|2429549 (AF025472) No definition line found [Caenorhabditis elegans] Length = 832 Score = 32.5 bits (72), Expect = 3.2 Identities = 28/109 (25%), Positives = 47/109 (42%) Query: 31 KMKYSYFCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNIKTLESAKKAYAS 210 K KY+ + KN + + D+L ++N F D + I ++DN +TLE A + Y Sbjct: 265 KTKYNKRLVGDKNYIDVVCEDLLHILTNAKFGE--DIEIRIWYDHDNQETLELANRLYEQ 322 Query: 211 LFLITNMARQIISLRKDMLSGFLVFVINNINSPYQFITSQCCYTLQFFD 357 + + + I +R L I N+ SQ C L +F+ Sbjct: 323 FKIHSQTTKNPIYVRS------LHLQIENL--------SQLCSVLTYFN 357
>gi|453515 (L28677) ORF1 [Tetrahymena pyriformis] Length = 443 Score = 32.5 bits (72), Expect = 3.2 Identities = 23/72 (31%), Positives = 38/72 (51%) Query: 22 NYIKMKYSYFCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNIKTLESAKKA 201 +Y MK+ + IN K+ N F ++LE +N + + F+ L+ E+ N E+ KK Sbjct: 210 DYNIMKFKHNLINYKSYFN--FKNMLEFSNNYFYLKNFNKHLNFNMEFKN-NFFENLKKT 266 Query: 202 YASLFLITNMAR 237 Y+ F TNM + Sbjct: 267 YSMSFSATNMVK 278
>gi|133636|sp|P14240|RRPO_LYCVA RNA POLYMERASE >gi|67126|pir||RRXPLC RNA-directed RNA polymerase (EC 2.7.7.48) - lymphocytic choriomeningitis virus (strain Armstrong 53b) >gi|331369 (J04331) L protein [Lymphocytic choriomeningitis virus] Length = 2210 Score = 32.1 bits (71), Expect = 4.2 Identities = 14/43 (32%), Positives = 26/43 (59%) Query: 337 YTLQFFDSKHVSPELNVNAFNTIMALINSGNEIFKVDAALTIL 465 +T + D +H +P +N+ AF+ +++ N+G IFK + L L Sbjct: 751 FTSKEIDCQHTTPGVNLEAFSLMVSSFNNGTLIFKGEKKLNSL 793
>gi|4582459|gb|AAD24843|AC007071_15 (AC007071) putative RanBP7/importin protein [Arabidopsis thaliana] Length = 1037 Score = 32.1 bits (71), Expect = 4.2 Identities = 38/230 (16%), Positives = 96/230 (41%), Gaps = 8/230 (3%) Query: 4 FENYPENYIKMKYSYF--CINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNIK 177 +E P Y++ Y+ + + + ++++ K ++ + F++ I Y+ Sbjct: 378 WEEDPHEYVRKGYNIIEDLYSPRTASMDFVNELVRKRGKENLPKFVKFVVEIFLSYEKAT 437 Query: 178 TLESAKK----AYASLFLITNMARQIISLRKDMLSGFLVFVINNINSPYQFITSQCCYTL 345 E + A ++ + + +Q + + + + + NSP + ++ + Sbjct: 438 VEEKPYRQKDGAMLAVGALCDKLKQTDPYKSQLELMLVQHIFPDFNSPVGHLRAKAAWVA 497 Query: 346 QFFDSKHVSPELNVN-AFNTIMALINSGNEIFKVDAALTILFFLD-CQQVRLIMDSQIPV 519 + + S + N A +++++ + + +VD+ + F++ C++ +M Sbjct: 498 GQYAHINFSDQNNFRKALHSVVSGLRDPDLPVRVDSVFALRSFVEACKEFFKLM------ 551 Query: 520 IIQTLIYCGNKYDLESCNDGLETIMDSFPEKISQYAPELTATLSKMILENLNEEENYD 693 N+ + E LETI+D F E+++ +A L L+ LN E D Sbjct: 552 ---------NEVENEDLVFTLETIVDKFGEEMAPFAFGLCQNLAAAFWRCLNTSEAND 600
>gi|4493896|emb|CAB39005| (AL034558) predicted using hexExon; MAL3P2.18 (PFC0245c), Hypothetical protein, len: 3934 aa [Plasmodium falciparum] Length = 3933 Score = 31.3 bits (69), Expect = 7.2 Identities = 42/201 (20%), Positives = 93/201 (45%), Gaps = 24/201 (11%) Query: 4 FENYPENYIKMKYSYFCIN------IKNTANGLFSDILEKISNDDF--------NRIFDF 141 F N ++ + C+N + + A ++S I +K+ D F + IF+F Sbjct: 53 FVNVSSKFLLFRRLSQCLNPLLPSGVHSKALIIYSSIFKKVEMDFFINNIHILCSGIFEF 112 Query: 142 LLSILQE-----YDNIKTLESAKK-----AYASLFLITNMARQIISLRKDMLSGFLVFVI 291 +L + NIK++ K+ AYA L + N ++ ++L ++ I Sbjct: 113 MLHCTINLKTIYFKNIKSILRLKENVYIFAYALLLSLFN----VVDSDNNIL--LYIYSI 166 Query: 292 NNINSPYQFITSQCCYTLQFFDSKHVSPELNVNAFNTIMALINSGNEIFKVDAALTILFF 471 NN F + L+ PE+ N N + A + ++ Sbjct: 167 NNYIGENIFFNNIWLLLLRH-------PEIRTNILNFLEASFSPQ------------IYL 207 Query: 472 LDCQQVRLIMDSQIPVIIQTLIYCGNKYDLESCNDGLETIMDSFP 606 L +++++++ + +++ ++IYC N ++ + L ++++FP Sbjct: 208 LSKERIKMLLPYKDHLVLSSIIYCLNDKNILNQRITLSLLINNFP 252
>gi|2688097 (AE001130) B. burgdorferi predicted coding region BB0199 [Borrelia burgdorferi] Length = 754 Score = 31.3 bits (69), Expect = 7.2 Identities = 30/118 (25%), Positives = 57/118 (47%), Gaps = 5/118 (4%) Query: 10 NYPENYIKMKYSY-----FCINIKNTANGLFSDILEKISNDDFNRIFDFLLSILQEYDNI 174 ++PE K+K Y I I + L EKI + + D L++I ++ Sbjct: 555 SFPEKINKIKIEYPKDKKHPIQIISNDFNLTLQANEKILKTNIE-VDDELMNI-----DL 608 Query: 175 KTLESAKKAYASLFLITNMARQIISLRKDMLSGFLVFVINNINSPYQFITSQCCYTLQFF 354 K ++ A++A S+ L+T I L S +++ N+PY+ + ++ +TL+ Sbjct: 609 KKIDIAERAVYSIDLVTQKIANQIELHFKNASKLIIY---QSNTPYKILANKIIFTLKNI 665 Query: 355 DSK 363 +SK Sbjct: 666 NSK 668 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 17, 1999 5:33 AM Number of letters in database: 113,023,754 Number of sequences in database: 369,800 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128273845 Number of Sequences: 369800 Number of extensions: 2475490 Number of successful extensions: 6083 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 6078 Number of HSP's gapped (non-prelim): 13 length of query: 235 length of database: 113023754 effective HSP length: 53 effective length of query: 181 effective length of database: 93424354 effective search space: 16909808074 effective search space used: 16909808074 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 68 (30.9 bits)