BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14-9R
         (619 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           368,476 sequences; 112,640,273 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1171592|emb|CAA64576| (X95276) rps4 [Plasmodium falciparum]         34  1.2


>gi|1171592|emb|CAA64576| (X95276) rps4 [Plasmodium falciparum] Length = 208 Score = 33.6 bits (75), Expect = 1.2 Identities = 52/163 (31%), Positives = 79/163 (47%), Gaps = 20/163 (12%) Query: 97 SIFKLKRSLKSKIFVMYN*YNFTKQRTIKYQVEIENKKF*NVKILL*KARNLSLFSYLS* 276 S F LK LK ++ YN Y T ++ + Y +I+NK + L K L L +L Sbjct: 40 SYFDLK--LKFIRYICYN-YCITYKKYLYYLNKIDNKNINILYFKLLKILELRLDIFLV- 95 Query: 277 NISSKKSLF-----------LIIKVINQYKNI*XA---------EIRNIPIKKLW*YNII 396 NI K++ I +IN+Y NI +I+ I +K L Y Sbjct: 96 NIGFFKTILQSRYYIKYKNIYINNIINKYYNINLKNNDILFFNNKIKYIILKNLI-YKYN 154 Query: 397 IYXYVSLLFN*KVRVYLGYS**GNEKYIIKSKKR*LCLQYAYLKNVIVLINRLLNDIIIC 576 IY Y+S L+ Y+ KY I +C+ +K I+ IN +LN+I+ Sbjct: 155 IYIYISNLYKYNFIKIYSYN-----KYFI------ICIYNFKIK--ILNINNILNNILYI 201 Query: 577 YNN 585 YN+ Sbjct: 202 YND 204 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 12, 1999 12:54 PM Number of letters in database: 112,640,273 Number of sequences in database: 368,476 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88202780 Number of Sequences: 368476 Number of extensions: 1430368 Number of successful extensions: 2132 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 2131 Number of HSP's gapped (non-prelim): 2 length of query: 206 length of database: 112640273 effective HSP length: 53 effective length of query: 152 effective length of database: 93111045 effective search space: 14152878840 effective search space used: 14152878840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 67 (30.5 bits)