BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 13VII-2R
         (746 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|3322576 (AE001210) conserved hypothetical integral membrane p...    32  4.5
gi|4049862 (AF063866) ORF MSV055 hypothetical protein [Melanoplu...    32  5.9


>gi|3322576 (AE001210) conserved hypothetical integral membrane protein [Treponema pallidum] Length = 377 Score = 32.1 bits (71), Expect = 4.5 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 199 IVLGIAIFSLVVIICSKDXXITFSKFFADLFQ-RXHXNSKYYK 74 ++LG+A+ S V+++CS++ ++ + FF F R + + ++K Sbjct: 11 VLLGVAVMSAVIVLCSENPSVSLAAFFLKPFSTRGYIRALFHK 53
>gi|4049862 (AF063866) ORF MSV055 hypothetical protein [Melanoplus sanguinipes entomopoxvirus] Length = 466 Score = 31.7 bits (70), Expect = 5.9 Identities = 26/97 (26%), Positives = 49/97 (49%), Gaps = 8/97 (8%) Query: 467 NNLKLTLVENLKLPLTILVYXLINXIYXFQVNCKLXIINDKVL*RQ--------LIYMTM 312 NN +L LK TI + + N Y F ++ + + +D+ + + + ++ + Sbjct: 127 NNTELNEYFYLKSE-TIQIDNIENAFYVFMIHRLVGLSSDRYIKSKYKLNELNIIKHLDI 185 Query: 311 FXKYNIFRNXNIPYSSYIINENKSKHYGVKSPHIYLNYRTRYRNI 177 + +IF N NI + + IIN+ K + K Y+ T+Y NI Sbjct: 186 YVLLHIFNNNNIIFDNDIINKKSLKKFSTK----YIYKITKYLNI 226 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 17, 1999 5:33 AM Number of letters in database: 113,023,754 Number of sequences in database: 369,800 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100833609 Number of Sequences: 369800 Number of extensions: 1492840 Number of successful extensions: 3039 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 3036 Number of HSP's gapped (non-prelim): 4 length of query: 248 length of database: 113,023,754 effective HSP length: 53 effective length of query: 195 effective length of database: 93424354 effective search space: 18217749030 effective search space used: 18217749030 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 68 (30.9 bits)