BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 13VII-20R
(805 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4493933|emb|CAB38969| (AL034556) predicted using hexExon; MAL... 34 0.97
gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falcipa... 33 2.9
gi|3769486 (AF074946) DNA polymerase [hemorrhagic enteritis virus] 32 4.9
gi|3660712 (AF063439) period [Plagodis fervidaria] 32 4.9
gi|141190|sp|P23217|YP23_STAAU HYPOTHETICAL TRANSCRIPTIONAL REGU... 31 8.4
gi|3764015|emb|CAA15608| (AL008970) predicted using hexExon; MAL... 31 8.4
gi|2688043 (AE001126) B. burgdorferi predicted coding region BB0... 31 8.4
>gi|4493933|emb|CAB38969| (AL034556) predicted using hexExon; MAL3P5.1 (PFC0575w),
Hypothetical protein, len: 645 aa [Plasmodium
falciparum]
Length = 644
Score = 34.4 bits (77), Expect = 0.97
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 76 ICKK*FFVYCNIIVYRH-SQIFIIFFPYFCNFLKLSIYENISHEII 210
IC +F YC ++ ++ S + I FF +FC FL +I E I E +
Sbjct: 192 ICTLIYFTYCMCLLIKYISHLCIFFFFFFCFFLCYNILERIYEECV 237
>gi|1171589|emb|CAA64574| (X95275) frameshift [Plasmodium falciparum]
Length = 960
Score = 32.8 bits (73), Expect = 2.9
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 28/228 (12%)
Query: 738 KYFLKDLINECTTHSRRYFEIK--RLSEKKYHNK--IKNNFVRXIFYKKNLNSLXFIXKI 571
KY L ++I + + +Y+ +L K HNK + N + ++Y I
Sbjct: 421 KYNLNNIIIKYLNNVIKYYNYSNIQLLIKNIHNKWILYNIYTYYLYY----------YHI 470
Query: 570 EALAEYN----LNRLKKTRGILY--IEHSRMFPNDYEIIMNSNI----TDYY---QEFIK 430
+ YN LN ++Y I + +F N Y I N+N ++YY FI
Sbjct: 471 KFYNLYNKGIILNNNNNKYNVIYFLINYFNLFSNYYYKIYNNNYNFINSNYYFKKMNFIL 530
Query: 429 TTINNIILLSTVNQIYNCFSEIENYIIEAFFILYQIERILTXIICNDRS*EISLPCGYD* 250
NNI +L+ + + N F + Y + F L I I+ N Y+
Sbjct: 531 KNFNNIQILNKLFYVNNIFIYYK-YEKKLFIYLNIINNIIIKKYLN------FYKYTYNK 583
Query: 249 MNMHTDFAEFLDIYD-----FMRYIFINTQ------LQKIAKVGEKYYKNLGMTINYNIA 103
+ + FL +Y+ + +Y+ +N + K KY N+ + N+
Sbjct: 584 LFFIKKYNNFLYLYEIFKYNWYKYLLLNNKYNLYIIYNNYIKYLYKYNININLYFIKNLF 643
Query: 102 VNKELFLANYILIGPN 55
N F+ N+I+ N
Sbjct: 644 YNNNNFIHNHIIYKNN 659
>gi|3769486 (AF074946) DNA polymerase [hemorrhagic enteritis virus]
Length = 1112
Score = 32.1 bits (71), Expect = 4.9
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 28/234 (11%)
Query: 711 ECTTHSRRYFEIKRLSEKK---YHNKIKNN---FVRXIFYK-----KNLNSLXFIXKIEA 565
+C++ R Y I ++ + Y+N + N+ F I ++ +N L I IE
Sbjct: 122 KCSSCGRIYSAIHTCNDLRSTYYYNSVDNDTRKFWETIPFQPIGENENTKKLFLIYDIET 181
Query: 564 LAEYNLNRLKKTRGILYIEHSRMFPNDYEIIMNSNITDYYQEFIKTTINNIILLSTVNQI 385
L +T G+L N + + D KT I I + T N
Sbjct: 182 FT------LAETSGVLL--------NPLLLCFSIFGDDCLINICKTEIAKIKSIQTKNST 227
Query: 384 YNCFSEIENYIIEAFF-----ILYQIERILTXIICNDRS*EISLPCGYD*MNMHTDFAEF 220
Y FS+++N+I F IL+ + T +I + EI DFA+
Sbjct: 228 YFWFSKVKNFISTEFRKLRNNILFALTDYFTKLILTPENREIL-----------EDFAQ- 275
Query: 219 LDIYDFMRYIFINTQLQKIAKVGEKYYKNLGMT------------INYNIAVNKELFLAN 76
L+ I + + NL M+ I +NI E+ LA
Sbjct: 276 ------------TQNLESITNINLSEHTNLIMSLKVKPIFIEFYIIGHNIQSFDEILLAT 323
Query: 75 YILIGPNASIQSFLTFYNSFKP 10
IL N I T +F P
Sbjct: 324 QILQDENLDITPLFTVERNFMP 345
>gi|3660712 (AF063439) period [Plagodis fervidaria]
Length = 353
Score = 32.1 bits (71), Expect = 4.9
Identities = 22/66 (33%), Positives = 35/66 (52%), Gaps = 3/66 (4%)
Query: 106 NIIVYRHSQIFIIFFPYFCNFLKLSIYENISHEIINIQK---FCKIRVHIHLIISAW*RN 276
+ I + H + F N L L + NI+HE I ++ C+IR H +LIIS R
Sbjct: 24 SFIEFVHPRDQSTFASQITNGLALPKFGNITHEKIRVESTTMVCRIRRHRNLIISFGTRE 83
Query: 277 FLASIVAYN 303
LA+ + ++
Sbjct: 84 RLAAFMPFH 92
>gi|141190|sp|P23217|YP23_STAAU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION (ORF 188)
>gi|97820|pir||S12393 hypothetical protein (qacA 5'
region) - Staphylococcus aureus plasmid pSK1
>gi|46660|emb|CAA39962| (X56628) ORF188, has identity
with known regulators such as tet regulator in Tn10
[Staphylococcus aureus]
Length = 188
Score = 31.3 bits (69), Expect = 8.4
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 732 FLKDLINECTTHSRRYFEIKRLSEKK-----YHNKIKNNFVRXIFYKKNLNSLXFIXKIE 568
F+K+ N TT EI +LSE YH K K N I N+ K +
Sbjct: 15 FIKNGYNATTTG-----EIVKLSESSKGNLYYHFKTKENLFLEIL---NIEE----SKWQ 62
Query: 567 ALAEYNLNRLKKTRGILYIEHSRMFPNDYEIIMNSNITDYYQEFIKTTINNIILLSTVNQ 388
+ + K R Y+ + +Y + + I ++Y E+ KT N
Sbjct: 63 EQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKT-----------NS 111
Query: 387 IYNCFSEIENYIIEAFFILYQ 325
I +++EN I+A+ ++++
Sbjct: 112 INEKMNKLENKYIDAYHVIFK 132
>gi|3764015|emb|CAA15608| (AL008970) predicted using hexExon; MAL3P4.18 (PFC0475c),
Hypothetical protein, len: 482 aa [Plasmodium
falciparum]
Length = 481
Score = 31.3 bits (69), Expect = 8.4
Identities = 22/89 (24%), Positives = 43/89 (47%), Gaps = 2/89 (2%)
Query: 645 KIKNNFVRXIFYKKNLNSLXFIXKIEALAEYNL--NRLKKTRGILYIEHSRMFPNDYEII 472
K N+ ++ Y KN+++ I ++ + N N + + I S +I
Sbjct: 76 KKDNDIIKSNIYNKNVSNNNLIKDVDDMISINSSSNTTNSIKNVSLINESYKNIYSNNVI 135
Query: 471 MNSNITDYYQEFIKTTINNIILLSTVNQIYN 379
N+N +D++ + I+ NNI L++ NQ+ N
Sbjct: 136 KNNN-SDFFNKNIE---NNIDLMNITNQVNN 162
>gi|2688043 (AE001126) B. burgdorferi predicted coding region BB0156 [Borrelia
burgdorferi]
Length = 144
Score = 31.3 bits (69), Expect = 8.4
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 687 YFEIKRLSEKKYHNKIKNNFVRXIFYKKNLNSLXFIXKIEALAEYNLNRLKKTRGILYIE 508
+F+I + + H KNN I YK++ N L I+ NL + K +Y++
Sbjct: 34 FFKILLIPRIQNHENNKNNIKMIISYKQDKNRLSLKINIKTKKTTNLGKAKLD---IYLD 90
Query: 507 HSRMFPNDYEIIMNSNITDYYQEFIKT-TINNIILLSTVN 391
S++ ++ I + N T Y + ++ +IIL S N
Sbjct: 91 -SKLIESNLLYISSKNFTTYANIIYQNESLLSIILKSNGN 129
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129291239
Number of Sequences: 369800
Number of extensions: 2455242
Number of successful extensions: 5821
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5815
Number of HSP's gapped (non-prelim): 14
length of query: 268
length of database: 113,023,754
effective HSP length: 54
effective length of query: 213
effective length of database: 93054554
effective search space: 19820620002
effective search space used: 19820620002
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)