BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII5R
         (812 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2370478|emb|CAB11506| (Z98849) putative dna repair helicase [...    89  5e-17
gi|267033|sp|Q00578|RA25_YEAST DNA REPAIR HELICASE RAD25 >gi|320...    85  7e-16
gi|172327 (L01414) DNA helicase [Saccharomyces cerevisiae]             85  7e-16
gi|2058508 (U77065) RepB [Dictyostelium discoideum]                    82  5e-15
gi|1351441|sp|P49135|XPB_MOUSE DNA-REPAIR PROTEIN COMPLEMENTING ...    75  6e-13
gi|4557563|oth|NP_000113|PERCC3 excision repair cross-complement...    75  8e-13
gi|1764011|emb|CAB06045| (Z83760) COS41.1 [Ciona intestinalis]         71  1e-11
gi|2129575|pir||S71206 DNA repair protein homolog XPBara - Arabi...    68  8e-11
gi|2072393 (U29168) similar to human Xeroderma pigmentosum group...    68  8e-11
gi|4150989|emb|CAA76655| (Y17148) XPB protein [Geodia cydonium]        64  1e-09
gi|401426|sp|Q02870|XPB_DROME DNA EXCISION REPAIR PROTEIN HAYWIR...    62  4e-09
gi|345491|pir||A44223 haywire protein - fruit fly (Drosophila me...    62  4e-09
gi|904101 (L02965) helicase [Drosophila melanogaster]                  55  5e-07
gi|3322660 (AE001217) DNA repair helicase, putative [Treponema p...    37  0.15
gi|2916920|emb|CAA17667| (AL022004) hypothetical protein Rv0861c...    32  3.8
gi|3482974|emb|CAA20530| (AL031369) ATP-dependent Clp proteinase...    31  8.5


>gi|2370478|emb|CAB11506| (Z98849) putative dna repair helicase [Schizosaccharomyces pombe] Length = 804 Score = 88.5 bits (216), Expect = 5e-17 Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 23/123 (18%) Query: 3 ILRAKRRNDPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENRT 182 ILRAKRRND GF FY+LVSKDT EM+YS+KRQ FLIDQGY+FK++T++ + N Sbjct: 652 ILRAKRRNDEGFNAFFYSLVSKDTQEMYYSSKRQAFLIDQGYAFKVITNLKGMENLPNLA 711 Query: 183 LKNKLEQKELLA-------------TXXXXXXXXXXXXXXXXXXXYCKGTLRDITGVGDV 323 +K E+ ELL G+L + G ++ Sbjct: 712 YASKAERLELLQEVLLQNEEAADLDDGEDTSFGSRSLSRAPAKAKRSSGSLSTLAGADNM 771 Query: 324 AYMEKKKT----------RRHTLFKK 371 AY+E K+ H LF+K Sbjct: 772 AYVEYNKSANKQLKKDSKEHHALFRK 797
>gi|267033|sp|Q00578|RA25_YEAST DNA REPAIR HELICASE RAD25 >gi|320659|pir||S31272 DNA helicase - yeast (Saccharomyces cerevisiae) >gi|172724 (M94176) encodes human ERCC-3 homologue [Saccharomyces cerevisiae] >gi|557780|emb|CAA86135| (Z38059) DNA repair helicase [Saccharomyces cerevisiae] Length = 843 Score = 84.7 bits (206), Expect = 7e-16 Identities = 40/71 (56%), Positives = 51/71 (71%) Query: 3 ILRAKRRNDPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENRT 182 ILRAKRRND GF FY+LVSKDT EM+YS KRQ FL+DQGY+FK++T + + N Sbjct: 690 ILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPNLA 749 Query: 183 LKNKLEQKELL 215 + E++ELL Sbjct: 750 YASPRERRELL 760
>gi|172327 (L01414) DNA helicase [Saccharomyces cerevisiae] Length = 843 Score = 84.7 bits (206), Expect = 7e-16 Identities = 40/71 (56%), Positives = 51/71 (71%) Query: 3 ILRAKRRNDPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENRT 182 ILRAKRRND GF FY+LVSKDT EM+YS KRQ FL+DQGY+FK++T + + N Sbjct: 690 ILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPNLA 749 Query: 183 LKNKLEQKELL 215 + E++ELL Sbjct: 750 YASPRERRELL 760
>gi|2058508 (U77065) RepB [Dictyostelium discoideum] Length = 800 Score = 81.9 bits (199), Expect = 5e-15 Identities = 39/72 (54%), Positives = 53/72 (73%) Query: 3 ILRAKRRNDPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENRT 182 ILR K ++D + FY+LVSKDT EM+YS KRQQFLIDQGYSFK+++++P I + N Sbjct: 647 ILRPKPKSDGLYNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVNLK 706 Query: 183 LKNKLEQKELLA 218 +K +Q +LLA Sbjct: 707 YSSKQDQLDLLA 718
>gi|1351441|sp|P49135|XPB_MOUSE DNA-REPAIR PROTEIN COMPLEMENTING XP-B CELLS HOMOLOG (XERODERMA PIGMENTOSUM GROUP B COMPLEMENTING PROTEIN HOMOLOG) (DNA EXCISION REPAIR PROTEIN ERCC-3) (BASAL TRANSCRIPTION FACTOR 2 89 KD SUBUNIT) (BTF2-P89) (TFIIH 89 KD S... >gi|477426|pir||A48994 DNA repair gene XPBC/ERCC-3 - mouse >gi|240583|bbs|71188 (S71186) XPBC/ERCC-3=DNA repair gene [mice, Peptide, 783 aa] [Mus sp.] Length = 783 Score = 74.9 bits (181), Expect = 6e-13 Identities = 49/126 (38%), Positives = 70/126 (54%), Gaps = 14/126 (11%) Query: 3 ILRAKRRN-DPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNE-- 173 +LRAK+ + FY+LVS+DT EM YS KRQ+FL+DQGYSFK++T + + + E Sbjct: 644 VLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELA 703 Query: 174 --NRTLKNKLEQKELLATXXXXXXXXXXXXXXXXXXXYCK--GTLRDITGVGDVAYMEKK 341 + + +L QK L AT + GT+ ++G D YME Sbjct: 704 FSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSGQASRRCGTMSSLSGADDTVYMEYH 763 Query: 342 KTRR-------HTLFKKFEK 380 +R H LFK+F K Sbjct: 764 SSRSKASSKHVHPLFKRFRK 783
>gi|4557563|oth|NP_000113|PERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) >gi|119541|sp|P19447|XPB_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-B CELLS (XERODERMA PIGMENTOSUM GROUP B COMPLEMENTING PROTEIN) (DNA EXCISION REPAIR PROTEIN ERCC-3) (BASAL TRANSCRIPTION FACTOR 2 89 KD SUBUNIT) (BTF2-P89) (TFIIH 89 KD SUBUNIT) >gi|105955|pir||A35661 XPBC/ERCC-3 protein - human >gi|182179 (M31899) DNA repair helicase [Homo sapiens] Length = 782 Score = 74.5 bits (180), Expect = 8e-13 Identities = 50/126 (39%), Positives = 71/126 (55%), Gaps = 15/126 (11%) Query: 3 ILRAKRRN-DPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENR 179 +LRAK+ + FY+LVS+DT EM YS KRQ+FL+DQGYSFK++T + + + E+ Sbjct: 643 VLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGM-EEEDL 701 Query: 180 TLKNKLEQKELL-----ATXXXXXXXXXXXXXXXXXXXYCK--GTLRDITGVGDVAYMEK 338 K EQ++LL AT + GT+ ++G D YME Sbjct: 702 AFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEY 761 Query: 339 KKTRR-------HTLFKKFEK 380 +R H LFK+F K Sbjct: 762 HSSRSKAPSKHVHPLFKRFRK 782
>gi|1764011|emb|CAB06045| (Z83760) COS41.1 [Ciona intestinalis] Length = 793 Score = 70.6 bits (170), Expect = 1e-11 Identities = 48/124 (38%), Positives = 66/124 (52%), Gaps = 14/124 (11%) Query: 3 ILRAKRRN-DPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENR 179 ILRAK+ + + FY+LVS+DT E+ YS KRQ+FL+DQGYSFK +T + I + E Sbjct: 655 ILRAKKGSLAEEYNAFFYSLVSQDTVEVAYSTKRQRFLVDQGYSFKAITHLTGIDEEEQL 714 Query: 180 TLKNKLEQKELLATXXXXXXXXXXXXXXXXXXXYCK---------GTLRDITGVGDVAYM 332 K EQ LL G + ++G D YM Sbjct: 715 AFTTKDEQHALLQKVLAASDLDAEEEMVPGEFGVGDKGKGGFRRAGAMSSMSGADDSVYM 774 Query: 333 EKKKTRR----HTLFKKF 374 E +KT++ H LFK+F Sbjct: 775 EYRKTKQRKGVHDLFKQF 792
>gi|2129575|pir||S71206 DNA repair protein homolog XPBara - Arabidopsis thaliana Length = 757 Score = 67.9 bits (163), Expect = 8e-11 Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 23/112 (20%) Query: 36 FKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENRTLKNKLEQKELL 215 + FY+LVS DT EM+YS KRQQFLIDQGYSFK++T +P + + ++ EQ LL Sbjct: 620 YNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLL 679 Query: 216 ATXXXX--------XXXXXXXXXXXXXXXYCKGTLRDITGVGDVAYME------------ 335 G++ ++G + YME Sbjct: 680 GKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYMEYNSGRHKSGQQF 739 Query: 336 ---KKKTRRHTLFKK 371 K T+RH LFKK Sbjct: 740 KKPKDPTKRHNLFKK 754
>gi|2072393 (U29168) similar to human Xeroderma pigmentosum group B DNA repair protein, Swiss-Prot Accession Number P19447 [Arabidopsis thaliana] Length = 755 Score = 67.9 bits (163), Expect = 8e-11 Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 23/112 (20%) Query: 36 FKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENRTLKNKLEQKELL 215 + FY+LVS DT EM+YS KRQQFLIDQGYSFK++T +P + + ++ EQ LL Sbjct: 618 YNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLL 677 Query: 216 ATXXXX--------XXXXXXXXXXXXXXXYCKGTLRDITGVGDVAYME------------ 335 G++ ++G + YME Sbjct: 678 GKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYMEYNSGRHKSGQQF 737 Query: 336 ---KKKTRRHTLFKK 371 K T+RH LFKK Sbjct: 738 KKPKDPTKRHNLFKK 752
>gi|4150989|emb|CAA76655| (Y17148) XPB protein [Geodia cydonium] Length = 810 Score = 64.0 bits (153), Expect = 1e-09 Identities = 45/122 (36%), Positives = 69/122 (55%), Gaps = 23/122 (18%) Query: 3 ILRAKRRN-DPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENR 179 ILRAK+ + + FY+LVS+DT+EM +S KRQ+FL++QGYSFK+++ + I + Sbjct: 663 ILRAKKDSVSEEYNAFFYSLVSQDTEEMHFSTKRQRFLVNQGYSFKVVSKL-GIEDEPSL 721 Query: 180 TLKNKLEQKELLATXXXXXXXXX---------------------XXXXXXXXXXYCKGTL 296 +L K EQ ELL G++ Sbjct: 722 SLATKKEQAELLQEVLSASDADAEEEGSSGAGKQGGSGMAGALLSSSSSGGGVSRRAGSM 781 Query: 297 RDITGVGDVAYMEKKKTR-RHTLFK 368 ++G D+ YME + +R +H LFK Sbjct: 782 ASMSGGDDMVYMEYRTSRPQHPLFK 806
>gi|401426|sp|Q02870|XPB_DROME DNA EXCISION REPAIR PROTEIN HAYWIRE (ERCC-3 HOMOLOG PROTEIN) >gi|283659|pir||S26719 ERCC3 protein - fruit fly (Drosophila melanogaster) >gi|11079|emb|CAA48386| (X68309) ERCC3 [Drosophila melanogaster] Length = 802 Score = 62.5 bits (149), Expect = 4e-09 Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 14/124 (11%) Query: 3 ILRAKRRN-DPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENR 179 ILRAK+ + FYTLVS+DT EM YS KRQ+FL++QGYS+K++T + + + + Sbjct: 663 ILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSDL 722 Query: 180 TLKNKLEQKELLATXXXXXXXXXXXXXXXXXXXYCK----------GTLRDITGVGDVAY 329 + EQ +LL Y G L ++G D Y Sbjct: 723 MYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGIVRRVGGLSSMSGGDDAIY 782 Query: 330 MEKKKTR---RHTLFKKF 374 E +K H LFKKF Sbjct: 783 YEHRKKNIGSVHPLFKKF 800
>gi|345491|pir||A44223 haywire protein - fruit fly (Drosophila melanogaster) Length = 802 Score = 62.5 bits (149), Expect = 4e-09 Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 14/124 (11%) Query: 3 ILRAKRRN-DPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENR 179 ILRAK+ + FYTLVS+DT EM YS KRQ+FL++QGYS+K++T + + + + Sbjct: 663 ILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSDL 722 Query: 180 TLKNKLEQKELLATXXXXXXXXXXXXXXXXXXXYCK----------GTLRDITGVGDVAY 329 + EQ +LL Y G L ++G D Y Sbjct: 723 MYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGIVRRVGGLSSMSGGDDAIY 782 Query: 330 MEKKKTR---RHTLFKKF 374 E +K H LFKKF Sbjct: 783 YEHRKKNIGSVHPLFKKF 800
>gi|904101 (L02965) helicase [Drosophila melanogaster] Length = 801 Score = 55.4 bits (131), Expect = 5e-07 Identities = 43/124 (34%), Positives = 61/124 (48%), Gaps = 14/124 (11%) Query: 3 ILRAKRRN-DPGFKVHFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKILTDIPEIYKNENR 179 ILRAK+ + FYTLVS+DT EM YS KR +FL++QG +K++T + + + + Sbjct: 662 ILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRHRFLVNQGICYKVITHLKGMDTDSDL 721 Query: 180 TLKNKLEQKELLATXXXXXXXXXXXXXXXXXXXYCK----------GTLRDITGVGDVAY 329 + EQ +LL Y G L ++G D Y Sbjct: 722 MYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGIVRRVGGLSSMSGGDDAIY 781 Query: 330 MEKKKTR---RHTLFKKF 374 E +K H LFKKF Sbjct: 782 YEHRKKNIGSVHPLFKKF 799
>gi|3322660 (AE001217) DNA repair helicase, putative [Treponema pallidum] Length = 606 Score = 37.1 bits (84), Expect = 0.15 Identities = 15/33 (45%), Positives = 26/33 (78%) Query: 45 HFYTLVSKDTDEMFYSNKRQQFLIDQGYSFKIL 143 HFY+LV++ T E + +RQ+FL++QGY+++ L Sbjct: 567 HFYSLVTEQTVEEDCALRRQRFLVEQGYTYETL 599
>gi|2916920|emb|CAA17667| (AL022004) hypothetical protein Rv0861c [Mycobacterium tuberculosis] Length = 542 Score = 32.5 bits (72), Expect = 3.8 Identities = 13/31 (41%), Positives = 23/31 (73%) Query: 48 FYTLVSKDTDEMFYSNKRQQFLIDQGYSFKI 140 FY++V++D+ + Y+ RQ+FL +QGY + I Sbjct: 501 FYSVVARDSLDAEYAAHRQRFLAEQGYGYII 531
>gi|3482974|emb|CAA20530| (AL031369) ATP-dependent Clp proteinase-like protein [Arabidopsis thaliana] Length = 874 Score = 31.3 bits (69), Expect = 8.5 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 21 RNDPGFKVHFYTLVSKDTDEMFYSNKRQQFL--IDQGYSFKIL--TDIPEIYKNENRTLK 188 RN+ K Y ++ + E+ N R +F+ ID+ F+ L +I +I + + R +K Sbjct: 725 RNNEDSKEAVYEIMKRQVVELARQNFRPEFMNRIDEYIVFQPLDSNEISKIVELQMRRVK 784 Query: 189 NKLEQKEL 212 N LEQK++ Sbjct: 785 NSLEQKKI 792 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 17, 1999 5:33 AM Number of letters in database: 113,023,754 Number of sequences in database: 369,800 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104684928 Number of Sequences: 369800 Number of extensions: 1468985 Number of successful extensions: 3217 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 3197 Number of HSP's gapped (non-prelim): 19 length of query: 270 length of database: 113023754 effective HSP length: 54 effective length of query: 216 effective length of database: 93054554 effective search space: 20099783664 effective search space used: 20099783664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 69 (31.3 bits)