BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 12VII-13F
         (641 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL...    41  0.006
gi|172000 (M84169) homologue of bacterial MutS protein [Saccharo...    38  0.049
gi|730065|sp|P25846|MSH1_YEAST MUTS PROTEIN HOMOLOG 1 >gi|630277...    38  0.049
gi|2191186 (AF007271) contains similarity to tropomyosin and kin...    38  0.084
gi|3329624 (AF078790) No definition line found [Caenorhabditis e...    38  0.084
gi|1934970|emb|CAA70130| (Y08926) AARP1 protein [Plasmodium falc...    38  0.084
gi|2832348|emb|CAA74990| (Y14674) glutamate--cysteine ligase [Pl...    37  0.14
gi|3250878|emb|CAA07354| (AJ006966) gamma-glutamylcysteine synth...    37  0.14
gi|123661|sp|P02828|HS83_DROME HEAT SHOCK PROTEIN 83 (HSP 82) >g...    36  0.25
gi|3649757|emb|CAB11106| (Z98547) predicted using hexExon; MAL3P...    36  0.25
gi|2062377 (U75687) heat shock protein 83 [Drosophila auraria]         36  0.25
gi|3845107 (AE001375) hypothetical protein [Plasmodium falciparum]     36  0.32
gi|3845266 (AE001415) hypothetical protein [Plasmodium falciparum]     36  0.32
gi|4160296|emb|CAA07715| (AJ007863) gamma-glutamylcysteine synth...    35  0.56
gi|72393|pir||SAZQK1 major merozoite surface antigen precursor -...    35  0.56
gi|224859|prf||1202270A antigen,major surface [Plasmodium falcip...    35  0.56
gi|1346587|sp|P04933|MSP1_PLAFW MEROZOITE SURFACE PROTEIN 1 PREC...    35  0.56
gi|4455909|emb|CAB36903| (AJ131294) major surface protein-1 [Clo...    35  0.56
gi|84241|pir||A24594 probable major surface antigen (83K, 19K, 4...    35  0.56
gi|1352937|sp|P47172|YJ9I_YEAST HYPOTHETICAL 39.9 KD PROTEIN IN ...    35  0.56
gi|1346586|sp|P04932|MSP1_PLAFK MEROZOITE SURFACE PROTEIN 1 PREC...    35  0.56
gi|4008441|emb|CAA22448| (AL034488) predicted using Genefinder; ...    34  0.73
gi|1710782|sp|P52498|RSR1_CANAL RAS-RELATED PROTEIN RSR1 >gi|120...    34  0.96
gi|1170659|sp|P33174|KIF4_MOUSE KINESIN-LIKE PROTEIN KIF4 >gi|10...    34  1.3
gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococc...    33  1.6
gi|1118176 (U41992) coded for by C. elegans cDNA yk113g4.3; code...    33  1.6
gi|2947228 (AF031886) erythrocyte binding protein [Plasmodium yo...    33  2.2
gi|603664 (U14101) putative reverse transcriptase; ORF2; encodes...    33  2.2
gi|5094|emb|CAA26191| (X02331) SPRAS-protein [Schizosaccharomyce...    32  2.8
gi|68942|pir||TVBYSR transforming protein ras - fission yeast (S...    32  2.8
gi|3845128 (AE001381) hypothetical protein [Plasmodium falciparum]     32  2.8
gi|461698|sp|P33322|CBF5_YEAST CENTROMERE/MICROTUBULE BINDING PR...    32  2.8
gi|1722855|sp|P50532|XCPC_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP...    32  2.8
gi|1208849 (U50066) T14A8.1 gene product [Caenorhabditis elegans]      32  2.8
gi|3123259|sp|P08647|RAS_SCHPO RAS-LIKE PROTEIN 1 >gi|2330716|em...    32  3.7
gi|172361 (K01970) RAS1 protein [Saccharomyces cerevisiae]             32  3.7
gi|3845309 (AE001424) RESA-H3 antigen [Plasmodium falciparum]          32  3.7
gi|3878857|emb|CAB05583| (Z83120) predicted using Genefinder; cD...    32  3.7
gi|2764713|emb|CAA05353| (AJ002379) sigma 70 [Campylobacter jejuni]    32  3.7
gi|68941|pir||TVBYPR transforming protein ras - fission yeast (S...    32  3.7
gi|2132082|pir||S67087 hypothetical protein YOR195w - yeast (Sac...    32  3.7
gi|530446|emb|CAA83773| (Z33128) DNA repair protein RecM [Mycopl...    32  3.7
gi|3549665|emb|CAA20576| (AL031394) hypothetical protein [Arabid...    32  3.7
gi|2688777 (AE001181) exonuclease SbcC (sbcC) [Borrelia burgdorf...    32  4.8
gi|3764023|emb|CAA15616| (AL008970) predicted using hexExon; MAL...    32  4.8
gi|4100186|gb|AAD00774| (U95159) gelsolin-related protein GRP125...    32  4.8
gi|4499900|emb|CAB39319| (AJ133736) BM-40 [Drosophila melanogaster]    32  4.8
gi|2633508|emb|CAB13011| (Z99110) similar to oligoendopeptidase ...    32  4.8
gi|2425133 (AF020282) DG2033 gene product [Dictyostelium discoid...    32  4.8
gi|1651216|dbj|BAA13561| (D88209) Pz-peptidase [Bacillus licheni...    32  4.8
gi|3764001|emb|CAA15594| (AL008970) predicted using hexExon; MAL...    31  6.3
gi|2314562|gb|AAD08433| (AE000639) DNA repair protein (recN) [He...    31  6.3
gi|1723436|sp|Q10251|YD23_SCHPO HYPOTHETICAL 119.9 KD PROTEIN C5...    31  6.3
gi|4493892|emb|CAB39001| (AL034558) predicted using hexExon; MAL...    31  6.3
gi|1707030 (U80444) F26B1.1 [Caenorhabditis elegans]                   31  6.3
gi|1216294 (L35238) non-muscle tropomyosin [Xenopus laevis]            31  6.3
gi|585379|sp|P33399|LAH1_YEAST LA PROTEIN HOMOLOG (LA RIBONUCLEO...    31  8.3
gi|1256281 (U53180) D1014.4 gene product [Caenorhabditis elegans]      31  8.3
gi|2129335|pir||D64315 type I restriction enzyme homolog - Metha...    31  8.3
gi|4493965|emb|CAB39024| (AL034559) predicted using hexExon; MAL...    31  8.3
gi|2649480 (AE001027) conserved hypothetical protein [Archaeoglo...    31  8.3
gi|3915925|sp|Q57588|Y124_METJA HYPOTHETICAL PROTEIN MJ0124 >gi|...    31  8.3
gi|4240313|dbj|BAA74935| (AB020719) KIAA0912 protein [Homo sapiens]    31  8.3
gi|508233 (U09358) Rca1p [Saccharomyces cerevisiae]                    31  8.3
gi|531754|emb|CAA56955| (X81068) probable mitochondrial protein ...    31  8.3
gi|1710045|sp|P40341|RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN ...    31  8.3


>gi|4493978|emb|CAB39037| (AL034559) predicted using hexExon; MAL3P7.21 (PFC0960c), Hypothetical protein, len: 1929 aa [Plasmodium falciparum] Length = 1928 Score = 41.4 bits (95), Expect = 0.006 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 7/200 (3%) Query: 619 IKQLTIAYKNFNMVFNFQKRLSELENEIKEITE--IDEIYQRYLRIKDLDTFMLELLLYS 446 +K+ +N+N + ++ E KEI E + EI Q +I +LD + ++ Sbjct: 1365 LKEKEKIQENYNKINKEHIKIIEELQSYKEIKEKHMKEITQIKEQIHNLDKHIAQI---- 1420 Query: 445 EDLDKNAFINIKRKITLIEKCSLGFYSTILSI----VSSFEFDKNILDSILKIVGEEEER 278 ++KN F + L EK S IL +S++E DKNI + +KI E+++ Sbjct: 1421 -QIEKNNF----EESYLKEKNENEKMSNILEEKYKELSTYEIDKNI--NKIKIEDLEKDK 1473 Query: 277 DNIP-RKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRI 101 +NI K E N+K+ K E E + + ++TKE+ +I I + ++I Sbjct: 1474 ENILLTKNEEINNLKEEYKMVQQHLEDTNVLYEKQKLAIDTITKEKNNI----INECDKI 1529 Query: 100 YTKRKIINLRRKMNHCLISFIDNRFKK 20 K K +N + K N N KK Sbjct: 1530 KNKNKKLNNKLKENQNNYEHTLNNIKK 1556
>gi|172000 (M84169) homologue of bacterial MutS protein [Saccharomyces cerevisiae] Length = 959 Score = 38.3 bits (87), Expect = 0.049 Identities = 36/125 (28%), Positives = 59/125 (46%), Gaps = 3/125 (2%) Query: 550 LENEIKEITEIDEIYQRYL--RIKDLDTF-MLELLLYSEDLDKNAFINIKRKITLIEKCS 380 L +K++ ++ I Q++ R + L+ M L S ++ K N T + K + Sbjct: 438 LRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNN-----TSLMKAT 492 Query: 379 LGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEI 200 L S I + S F+KN++D ILK + EEE K +A D + DID + Sbjct: 493 LK--SQITQLTESLNFEKNLIDDILKFLNEEE-----LAKSQDAKQNADVTRMLDIDVKD 545 Query: 199 KKYTKETE 176 KK + + E Sbjct: 546 KKESNKDE 553
>gi|730065|sp|P25846|MSH1_YEAST MUTS PROTEIN HOMOLOG 1 >gi|630277|pir||S48962 MSH1 protein - yeast (Saccharomyces cerevisiae) >gi|529134 (U00059) Yhr120wp [Saccharomyces cerevisiae] Length = 959 Score = 38.3 bits (87), Expect = 0.049 Identities = 36/125 (28%), Positives = 59/125 (46%), Gaps = 3/125 (2%) Query: 550 LENEIKEITEIDEIYQRYL--RIKDLDTF-MLELLLYSEDLDKNAFINIKRKITLIEKCS 380 L +K++ ++ I Q++ R + L+ M L S ++ K N T + K + Sbjct: 438 LRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLNN-----TSLMKAT 492 Query: 379 LGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEI 200 L S I + S F+KN++D ILK + EEE K +A D + DID + Sbjct: 493 LK--SQITQLTESLNFEKNLIDDILKFLNEEE-----LAKSQDAKQNADVTRMLDIDVKD 545 Query: 199 KKYTKETE 176 KK + + E Sbjct: 546 KKESNKDE 553
>gi|2191186 (AF007271) contains similarity to tropomyosin and kinesin [Arabidopsis thaliana] Length = 1181 Score = 37.5 bits (85), Expect = 0.084 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 16/185 (8%) Query: 559 LSELENEIKEITEIDEIYQRYLRIKDLDTFMLE-------LLLYSEDLDKNAFINIKRKI 401 ++ L NE+KE + I + ++D++ + E + L E+ + I +R Sbjct: 401 VNSLNNELKET--VQRIESKGKELEDMERLIQERSGHNESIKLLLEEHSEELAIKEERHN 458 Query: 400 TLIE---KCSLGFYS---TILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNI 239 + E K SL S TI + + LDS K + EE + K NE ++ Sbjct: 459 EIAEAVRKLSLEIVSKEKTIQQLSEKQHSKQTKLDSTEKCL--EETTAELVSKENELCSV 516 Query: 238 KDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDK--EILKMNRIYTK-RKIINLRR 68 KDT +E + EIK+ ++ + + + KD K E++K+ T+ K + L++ Sbjct: 517 KDTYRECLQNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKELGLKK 576 Query: 67 KMNHCLISFIDNRFKKLKGEE 5 K H I+ + KKL E Sbjct: 577 KQIHVRSEKIELKDKKLDARE 597
>gi|3329624 (AF078790) No definition line found [Caenorhabditis elegans] Length = 197 Score = 37.5 bits (85), Expect = 0.084 Identities = 37/133 (27%), Positives = 64/133 (47%), Gaps = 2/133 (1%) Query: 568 QKRLSELENEIKE--ITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITL 395 +K S++++E+KE + D+ + K DTF + +D D+ + K+K Sbjct: 71 KKEKSKMKSEVKEPDAPKKDDKTSDEKKEKQEDTFDA-VKPKQQDADRKKELCDKKKAE- 128 Query: 394 IEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDD 215 + G Y T I+ + EFDK + ++ K ++ + D K + KD +KEDD Sbjct: 129 ----NKGDYKTWNKIIENSEFDKTLSENDGKKKKKKNKDDEKDEKKEDTDGKKDEKKEDD 184 Query: 214 IDAEIKKYTKETEGK 170 D KK T+E + K Sbjct: 185 KDD--KKKTEEDDKK 197
>gi|1934970|emb|CAA70130| (Y08926) AARP1 protein [Plasmodium falciparum] Length = 3844 Score = 37.5 bits (85), Expect = 0.084 Identities = 50/210 (23%), Positives = 95/210 (44%), Gaps = 16/210 (7%) Query: 634 KDYADIKQLT-IAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDL-DTFMLE 461 K Y D+ +L+ ++ +++++ N LE + DE Y++ + ++ + F +E Sbjct: 1585 KIYDDVDRLSSVSSTSYDILMN------HLEESCMYTSYSDETYEKNGNVYNMREGFNVE 1638 Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEE 281 L Y +D+ +N K+ I IE + VS ++L K + Sbjct: 1639 NLSYDKDI-----LNEKKDIVEIENEKEKYIKINDHTVSRNYGCVSLLKDEPKFSSTDGN 1693 Query: 280 RDNIPRKCNEAXNIKDTEK-------------EDDIDAEIKKYTKETEGKFLSSLTKEQK 140 +NI +CN D K ED + +IK+ K+ +S ++ Sbjct: 1694 NNNIINRCNNNNYYYDNMKHVDVKGGEGEGEGEDSEECQIKESYKK-----MSECNNKEN 1748 Query: 139 DIYDK-EILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGEE 5 I+D +L+ N I +++ N K +C I + DN KK K ++ Sbjct: 1749 IIFDSISVLRKNNI---KRLKNYMCKNKNCYIYYDDNNNKKKKNKK 1791
>gi|2832348|emb|CAA74990| (Y14674) glutamate--cysteine ligase [Plasmodium falciparum] Length = 1161 Score = 36.7 bits (83), Expect = 0.14 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 304 KIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDK 125 +I + +E+DN PR CN+ N+ D+ DI F+SSL K+ +++ Sbjct: 396 EIENKNKEKDNTPRSCNDYNNVNDSSNTQDI--------------FISSL-KKTDSLFEC 440 Query: 124 EILKMNRI--YTKRKIINLRRKMNHCLISFIDNRFKKLKG 11 E+ K + Y+K +I H + +K +G Sbjct: 441 EVFKPEQTNKYSKSALITDMTISPHARYVTLTQNIRKRRG 480
>gi|3250878|emb|CAA07354| (AJ006966) gamma-glutamylcysteine synthetase [Plasmodium falciparum] Length = 1118 Score = 36.7 bits (83), Expect = 0.14 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 304 KIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDK 125 +I + +E+DN PR CN+ N+ D+ DI F+SSL K+ +++ Sbjct: 354 EIENKNKEKDNTPRSCNDYNNVNDSSNTQDI--------------FISSL-KKTDSLFEC 398 Query: 124 EILKMNRI--YTKRKIINLRRKMNHCLISFIDNRFKKLKG 11 E+ K + Y+K +I H + +K +G Sbjct: 399 EVFKPEQTNKYSKSALITDMTISPHARYVTLTQNIRKRRG 438
>gi|123661|sp|P02828|HS83_DROME HEAT SHOCK PROTEIN 83 (HSP 82) >gi|2144913|pir||HHFF83 heat shock protein 83 - fruit fly (Drosophila melanogaster) >gi|8127|emb|CAA27435| (X03810) hsp 82 [Drosophila melanogaster] Length = 717 Score = 36.0 bits (81), Expect = 0.25 Identities = 49/186 (26%), Positives = 84/186 (44%), Gaps = 7/186 (3%) Query: 574 NFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLL-YSEDLDKNA----FINIK 410 N K+ EL I+E+TE E Y+++ D F L L ED + A F+ Sbjct: 400 NLVKKTMEL---IEELTEDKENYKKFY-----DQFSKNLKLGVHEDSNNRAKLADFLRFH 451 Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCN--EAXNIK 236 + + CSL Y + + K+ + I GE +++ + +A + Sbjct: 452 TSASGDDFCSLADYVSRM---------KDNQKHVYFITGESKDQVSNSAFVERVKARGFE 502 Query: 235 DTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNH 56 + ID + ++ KE +GK L S+TKE ++ + E K R K K +L + M Sbjct: 503 VVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDKAKFESLCKLMK- 561 Query: 55 CLISFIDNRFKKL 17 S +DN+ +K+ Sbjct: 562 ---SILDNKVEKV 571
>gi|3649757|emb|CAB11106| (Z98547) predicted using hexExon; MAL3P3.5 (PFC0345w), Hypothetical protein, len: 1712 aa [Plasmodium falciparum] Length = 1711 Score = 36.0 bits (81), Expect = 0.25 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 12/192 (6%) Query: 592 NFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINI 413 N+ ++ N KRL+ ++N I EI+ + + K+L+ L + + +++ N Sbjct: 1004 NYYILTN-DKRLN-MDNFINNNLEINNSQNKVIE-KNLEYINNVKLTKTSNYEQSNNTNS 1060 Query: 412 KRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNI---PRKCNEAXN 242 K + + S + LS SS+E++ IL S +N+ +K N+ Sbjct: 1061 KDEHNISSDKSKKEDTLNLSRKSSYEYNNKILQSTSNKSLNGAYENNLFSGKKKKNKGTV 1120 Query: 241 IKDTEKEDDIDAE---------IKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89 +KD E +DI + + KY E E K L L E + E +N+I Sbjct: 1121 LKDIEHINDIQDKYPEDLNINCVNKYVIENEEKHLLPLELEYNLVSSDEKFGLNKIKNDN 1180 Query: 88 KIINLRRKMNHCLISFIDNRFKKL 17 II ++ + H L + DN+ K + Sbjct: 1181 NIIYMKHQNYHNL--YDDNQKKHI 1202
>gi|2062377 (U75687) heat shock protein 83 [Drosophila auraria] Length = 716 Score = 36.0 bits (81), Expect = 0.25 Identities = 48/186 (25%), Positives = 84/186 (44%), Gaps = 7/186 (3%) Query: 574 NFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLL-YSEDLDKNA----FINIK 410 N K+ EL I+E+TE E Y+++ D F L L ED + A F+ Sbjct: 399 NLVKKTMEL---IEELTEDKENYKKFY-----DQFSKNLKLGVHEDSNNRAKLADFLRFH 450 Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCN--EAXNIK 236 + + CSL Y + + K + I GE +++ + +A + Sbjct: 451 TSASGDDFCSLSDYVSRM---------KENQKHVYFITGESKDQVSNSAFVERVKARGFE 501 Query: 235 DTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNH 56 + ID + ++ KE +GK L S+TKE ++ + + K R K K +L + MN Sbjct: 502 VVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDDAEKKKREEDKAKFESLCKLMN- 560 Query: 55 CLISFIDNRFKKL 17 + +DN+ +K+ Sbjct: 561 ---AILDNKVEKV 570
>gi|3845107 (AE001375) hypothetical protein [Plasmodium falciparum] Length = 1979 Score = 35.6 bits (80), Expect = 0.32 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 1/191 (0%) Query: 586 NMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE-LLLYSEDLDKNAFINIK 410 N + N++ ++ ELE E+KE+ + K++D E L ED K + Sbjct: 146 NKIVNYESKIEELEKELKEVKD-----------KNIDNNDYENKLKEKEDFVKQKIDMLN 194 Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDT 230 K L+++ L +K I + I+ +EE NI ++ E ++T Sbjct: 195 EKENLLQEKELDINKR----------EKKINEKEKNIIKKEETFHNIEKEYLEKNKERET 244 Query: 229 EKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCL 50 + ID IKK+ ++ K KE + +K++L + + K ++ N + Sbjct: 245 ISIEIID--IKKHLEKL--KIEIKEKKEDLENLNKKLLSKENVLKELK--GCVKEKNETI 298 Query: 49 ISFIDNRFKKLK 14 S DN +K K Sbjct: 299 NSLNDNIIEKEK 310
>gi|3845266 (AE001415) hypothetical protein [Plasmodium falciparum] Length = 1351 Score = 35.6 bits (80), Expect = 0.32 Identities = 27/75 (36%), Positives = 39/75 (52%) Query: 310 ILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIY 131 +LK V EEEE++ K E ++ EKE++ D E +K ++ E K KE++D Sbjct: 863 VLKTV-EEEEKEEEEEKEKEKEEEEEDEKEEEEDKEKEKEEEKEEEK-----DKEEEDEK 916 Query: 130 DKEILKMNRIYTKRK 86 DKE K I K K Sbjct: 917 DKEKEKEEEIQKKVK 931
>gi|4160296|emb|CAA07715| (AJ007863) gamma-glutamylcysteine synthetase [Plasmodium falciparum] Length = 1063 Score = 34.8 bits (78), Expect = 0.56 Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 1/63 (1%) Query: 304 KIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTK-EQKDIYD 128 +I + +E+DN PR CN+ N+ D DI K+T+ F + K EQ + Y Sbjct: 298 EIENKNKEKDNTPRSCNDYNNVNDRTNTQDI---FISSLKKTDSLFECEVFKPEQTNKYS 354 Query: 127 KEIL 116 K L Sbjct: 355 KSAL 358
>gi|72393|pir||SAZQK1 major merozoite surface antigen precursor - Plasmodium falciparum (strain K1/Thai) Length = 1631 Score = 34.8 bits (78), Expect = 0.56 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%) Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269 D + N+ + L E SLG I + + +N + ILK E + + Sbjct: 903 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 962 Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89 K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+ Sbjct: 963 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1013 Query: 88 KII 80 K + Sbjct: 1014 KTV 1016
>gi|224859|prf||1202270A antigen,major surface [Plasmodium falciparum] Length = 1631 Score = 34.8 bits (78), Expect = 0.56 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%) Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269 D + N+ + L E SLG I + + +N + ILK E + + Sbjct: 903 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 962 Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89 K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+ Sbjct: 963 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1013 Query: 88 KII 80 K + Sbjct: 1014 KTV 1016
>gi|1346587|sp|P04933|MSP1_PLAFW MEROZOITE SURFACE PROTEIN 1 PRECURSOR (MEROZOITE SURFACE ANTIGENS) (PMMSA) (P195) >gi|102354|pir||S05603 major merozoite surface antigen precursor - Plasmodium falciparum (strain Palo Alto PLF-3/B11) >gi|9865|emb|CAA26676| (X02919) P195 precursor [Plasmodium falciparum] >gi|9897|emb|CAA33163| (X15063) gp195 surface antigen preprotein [Plasmodium falciparum] Length = 1639 Score = 34.8 bits (78), Expect = 0.56 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%) Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269 D + N+ + L E SLG I + + +N + ILK E + + Sbjct: 912 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 971 Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89 K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+ Sbjct: 972 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1022 Query: 88 KII 80 K + Sbjct: 1023 KTV 1025
>gi|4455909|emb|CAB36903| (AJ131294) major surface protein-1 [Cloning vector pBSK*-MSP-1s/FCB] Length = 1639 Score = 34.8 bits (78), Expect = 0.56 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%) Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269 D + N+ + L E SLG I + + +N + ILK E + + Sbjct: 912 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 971 Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89 K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+ Sbjct: 972 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1022 Query: 88 KII 80 K + Sbjct: 1023 KTV 1025
>gi|84241|pir||A24594 probable major surface antigen (83K, 19K, 42K) precursor - Plasmodium falciparum >gi|224673|prf||1110241A protein P195 [Plasmodium falciparum] Length = 1640 Score = 34.8 bits (78), Expect = 0.56 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%) Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269 D + N+ + L E SLG I + + +N + ILK E + + Sbjct: 912 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 971 Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89 K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+ Sbjct: 972 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1022 Query: 88 KII 80 K + Sbjct: 1023 KTV 1025
>gi|1352937|sp|P47172|YJ9I_YEAST HYPOTHETICAL 39.9 KD PROTEIN IN HOM6-PMT4 INTERGENIC REGION >gi|1078283|pir||S57164 probable membrane protein YJR141w - yeast (Saccharomyces cerevisiae) >gi|1015884|emb|CAA89673| (Z49641) ORF YJR141w [Saccharomyces cerevisiae] Length = 347 Score = 34.8 bits (78), Expect = 0.56 Identities = 18/73 (24%), Positives = 38/73 (51%) Query: 328 KNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTK 149 KN+ D+++ I G+EE+ ++I + E E+ +DA K + + ++++ L Sbjct: 28 KNLKDTLMSISGDEEQVEDI---------LLPVEVEEKVDASYKFKNRGKDLEWMTKLRS 78 Query: 148 EQKDIYDKEILKM 110 + IYD I+ + Sbjct: 79 KSSKIYDSSIMSL 91
>gi|1346586|sp|P04932|MSP1_PLAFK MEROZOITE SURFACE PROTEIN 1 PRECURSOR (MEROZOITE SURFACE ANTIGENS) (PMMSA) (P190) >gi|929798|emb|CAA27070| (X03371) precursor for the major merozoite surface antigens [Plasmodium falciparum] Length = 1630 Score = 34.8 bits (78), Expect = 0.56 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%) Query: 436 DKNAFINIKRKITLIEKC-SLGFYSTILSIVSSFEFDKNILDSILK---IVGEEEERDNI 269 D + N+ + L E SLG I + + +N + ILK E + + Sbjct: 903 DTSHSTNLNNSLKLFENILSLGKNKNIYQELIGQKSSENFYEKILKDSDTFYNESFTNFV 962 Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKR 89 K ++ ++ D K ++ +I K K + F D+Y+K LK+ R++ K+ Sbjct: 963 KSKADDINSLNDESKRKKLEEDINKLKKTLQLSF---------DLYNKYKLKLERLFDKK 1013 Query: 88 KII 80 K + Sbjct: 1014 KTV 1016
>gi|4008441|emb|CAA22448| (AL034488) predicted using Genefinder; cDNA EST yk433c6.3 comes from this gene; cDNA EST EMBL:D72601 comes from this gene; cDNA EST EMBL:D75524 comes from this gene; cDNA EST yk433c6.5 comes from this gene [Caenorhabditis elegans] Length = 210 Score = 34.4 bits (77), Expect = 0.73 Identities = 29/96 (30%), Positives = 52/96 (53%), Gaps = 6/96 (6%) Query: 394 IEKCSLGFYSTILSIVSSFEFDKNILDSILKIVG----EEEERDNIPRKCNEAXN-IKDT 230 IE C L + + ++ S+ K D + VG ++ + +P K NE N ++ T Sbjct: 79 IEGCKLNNVAIVYTMWSNL---KKTGDMAVGQVGFHSHKQVKHTVVPTKINEIVNRLEKT 135 Query: 229 EKEDDIDAEIKKYTKET-EGKFLSSLTKEQKDIYDKEILKMN 107 ++DDID + ++ ++ E + L L +E+KD KE+L N Sbjct: 136 RRKDDIDYKEERDARDAKERQKLKKLEQERKDREKKEMLAQN 177
>gi|1710782|sp|P52498|RSR1_CANAL RAS-RELATED PROTEIN RSR1 >gi|1203834 (U46158) Rsr1p [Candida albicans] Length = 248 Score = 34.0 bits (76), Expect = 0.96 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 547 ENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLIEKCSL-GF 371 EN +KE+ + E + LRIKD D + L+ DL+ + ++I+ + + + L F Sbjct: 87 ENSLKELLALRE---QVLRIKDSDNVPMVLVGNKCDLEDDRVLSIEDGVKVSQDWGLVPF 143 Query: 370 YSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKY 191 Y T S + D+ +D + +I+ +E + +K + + +++ + DAE + Sbjct: 144 YET--SAMYKTNVDEAFIDVVRQIM-RKEAAISAEKKQQKELQKQQQQQQQEQDAE-GQQ 199 Query: 190 TKETEGKFLSSLTKEQKD 137 ++ GK SS T QKD Sbjct: 200 QQQKSGKSKSSAT--QKD 215
>gi|1170659|sp|P33174|KIF4_MOUSE KINESIN-LIKE PROTEIN KIF4 >gi|1083417|pir||A54803 microtubule-associated motor KIF4 - mouse >gi|563773|dbj|BAA02167| (D12646) KIF4 [Mus musculus] Length = 1231 Score = 33.6 bits (75), Expect = 1.3 Identities = 31/150 (20%), Positives = 66/150 (43%), Gaps = 3/150 (2%) Query: 568 QKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITL-I 392 +KRL ELE +I ++ + + + L++K+ + L + KN + + R++ Sbjct: 600 RKRLQELEGQIADLKKKLQEQSKLLKLKESTEHTVSKLNQEIRMMKNQRVQLMRQMKEDA 659 Query: 391 EKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDI 212 EK ++ E D+ +LK+ +++ N+ R+ E + +D + Sbjct: 660 EKFRQWKQQKDKEVIQLKERDRKRQYELLKLERNFQKQSNVLRRKTEEAAAANKRLKDAL 719 Query: 211 --DAEIKKYTKETEGKFLSSLTKEQKDIYDKEI 119 E+ + KET+ + + S K+ EI Sbjct: 720 QKQKEVAEKRKETQSRGMESTAARMKNWLGNEI 752
>gi|2128791|pir||A64465 hypothetical protein MJ1322 - Methanococcus jannaschii >gi|1591962 (U67572) purine NTPase [Methanococcus jannaschii] Length = 1005 Score = 33.2 bits (74), Expect = 1.6 Identities = 44/211 (20%), Positives = 97/211 (45%), Gaps = 17/211 (8%) Query: 640 IIKDYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE 461 I K++ DI++L ++N +++ +K +++LE + + E+ + L+I + D + Sbjct: 220 IKKEFEDIEKLFNEWENKKLLY--EKFINKLEERKRAL----ELKNQELKILEYDLNTVV 273 Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSL------GFYSTILSIVSSFEFDKNILDSILKI 299 + + K+ + K + I K Y L + E K ++ + + Sbjct: 274 EARETLNRHKDEYEKYKSLVDEIRKIESRLRELKSHYEDYLKLTKQLEIIKGDIEKLKEF 333 Query: 298 VGEEEERDNIPRKCNEAXNIKD----TEKEDDIDAEIKKYTKETEG-KFLSSLTKEQKDI 134 + + + RD+I IKD E D+ E+K +E E + + +E K+ Sbjct: 334 INKSKYRDDIDNLDTLLNKIKDEIERVETIKDLLEELKNLNEEIEKIEKYKRICEECKEY 393 Query: 133 YDK------EILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGE 8 Y+K + ++ N++ + + +K I+ ++ R KL E Sbjct: 394 YEKYLELEEKAVEYNKLTLEYITLLQEKKSIEKNINDLETRINKLLEE 441
>gi|1118176 (U41992) coded for by C. elegans cDNA yk113g4.3; coded for by C. elegans cDNA yk113g4.5; coded for by C. elegans cDNA yk113c6.5; coded for by C. elegans cDNA yk105f7.5; coded for by C. elegans cDNA yk73g12.5 [Caenorhabditis elegans] Length = 374 Score = 33.2 bits (74), Expect = 1.6 Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 292 EEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILK 113 +EEE +K ++ + E+EDD + E+ K K+T+ K + T E++D ++E++K Sbjct: 229 DEEEEPVATKKSKKSKRAETPEEEDDEEEEVVKTPKKTK-KSKRAETPEEEDEVEEEVVK 287
>gi|2947228 (AF031886) erythrocyte binding protein [Plasmodium yoelii yoelii] Length = 1701 Score = 32.8 bits (73), Expect = 2.2 Identities = 25/97 (25%), Positives = 48/97 (48%) Query: 292 EEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILK 113 EE +R +K E + EK+ + + +I + K+ E + + + ++++ E++K Sbjct: 1469 EERKRIEAVKKAEEERKRIEAEKKAEEERKIIEAAKKAEEERIKAEAVKKEE----EVIK 1524 Query: 112 MNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGEEF 2 N ++ KI N N+ + DN FKKL EE+ Sbjct: 1525 KNSNLSETKISN-----NYETRNIDDNSFKKLDEEEY 1556
>gi|603664 (U14101) putative reverse transcriptase; ORF2; encodes aa motifs conserved in reverse transcriptases; most closely related reverse transcriptases are those of non-LTR retrotransposons. The 3' 901 bp of this CDS are identical to the 3' 901 bp ... Length = 1084 Score = 32.8 bits (73), Expect = 2.2 Identities = 45/170 (26%), Positives = 72/170 (41%), Gaps = 6/170 (3%) Query: 577 FNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSED-LDKNAFINIKRKI 401 F+ K L E I ++ + L +LDT L L + + L KN I + +K+ Sbjct: 207 FSICKGLGRFEKRISSGADLSSDHLPILLEINLDTNTLFLQKQNNNILKKNTNIELFKKV 266 Query: 400 T---LIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDT 230 ++ + I +S+F KNI DS + RDN R+ +A T Sbjct: 267 LERKILLNTEIRVAEDINDAISTFM--KNIKDSAAESTPSPRIRDNPRRRHRQANRNSHT 324 Query: 229 EKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKM--NRIYTKRKIINLRR 68 D+ + + + E + LS + K K+ DK LK NR+ KI+ R Sbjct: 325 LALDENTSRLLE-----EKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENR 375
>gi|5094|emb|CAA26191| (X02331) SPRAS-protein [Schizosaccharomyces pombe] Length = 219 Score = 32.5 bits (72), Expect = 2.8 Identities = 19/64 (29%), Positives = 31/64 (47%) Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416 + F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++ Sbjct: 81 QGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 132 Query: 415 IKRK 404 + + Sbjct: 133 RRER 136
>gi|68942|pir||TVBYSR transforming protein ras - fission yeast (Schizosaccharomyces pombe) (strain JY282) Length = 219 Score = 32.5 bits (72), Expect = 2.8 Identities = 19/64 (29%), Positives = 31/64 (47%) Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416 + F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++ Sbjct: 81 QGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 132 Query: 415 IKRK 404 + + Sbjct: 133 RRER 136
>gi|3845128 (AE001381) hypothetical protein [Plasmodium falciparum] Length = 508 Score = 32.5 bits (72), Expect = 2.8 Identities = 30/109 (27%), Positives = 49/109 (44%) Query: 448 SEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNI 269 ++ +DKN INI + + + +STI ++ S +K I ++LK +E NI Sbjct: 210 NQHIDKNKNINININLHDDKNDEIRKHSTIQTLYHSNNKEKIISKNVLK-----DESTNI 264 Query: 268 PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKE 122 ++CN K DD + K+ +E E K IY+KE Sbjct: 265 TKECN-------VNKYDDNIIDHKQKHREKEKKKSIENMNISHIIYEKE 306
>gi|461698|sp|P33322|CBF5_YEAST CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 (CENTROMERE-BINDING FACTOR 5) (NUCLEOLAR PROTEIN CBF5) (P64') >gi|542251|pir||S41853 centromere/microtubule-binding protein CBF5 - yeast (Saccharomyces cerevisiae) >gi|311097 (L12351) centromere/microtubule binding protein [Saccharomyces cerevisiae] >gi|577203 (U17246) Cbf5p: centromere/microtubule binding protein [Saccharomyces cerevisiae] Length = 483 Score = 32.5 bits (72), Expect = 2.8 Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 2/57 (3%) Query: 292 EEEERDNIPRKCNEAXNIKD--TEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKE 122 E +E + P+K E IK+ TEKE+ + + KK KE + K KE+KD +K+ Sbjct: 401 ETKETEEEPKKAKEDSLIKEVETEKEEVKEDDSKKEKKEKKDKKEKKEKKEKKDKKEKK 459
>gi|1722855|sp|P50532|XCPC_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-C >gi|1079281|pir||A55094 chromosomal protein XCAP-C - African clawed frog >gi|563812 (U13673) XCAP-C [Xenopus laevis] Length = 1290 Score = 32.5 bits (72), Expect = 2.8 Identities = 32/154 (20%), Positives = 74/154 (47%), Gaps = 1/154 (0%) Query: 565 KRLSELENEIKEITE-IDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLIE 389 K L ++E ++ +IT+ I+E +++ ++ D E L +S+ K +++ ++ Sbjct: 361 KALKDVEKQLNKITKFIEENREKFTQLDLQDVDTREKLKHSKSKVKKLQKQLQKDKEKVD 420 Query: 388 KCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDID 209 + KN+ + KI+ EE + ++ K E K+ EK ++ Sbjct: 421 EL------------------KNVPANSQKIIAEETNKKDLLEKQKE----KEEEKLKNVM 458 Query: 208 AEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNR 104 +K KET+G +E+K++ +KE++++++ Sbjct: 459 DSLK---KETQG------LQEEKEVKEKELMEISK 484
>gi|1208849 (U50066) T14A8.1 gene product [Caenorhabditis elegans] Length = 349 Score = 32.5 bits (72), Expect = 2.8 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 565 KRLSELENE--IKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLI 392 KR +LE + +KE + E ++Y IKDL+ + E S++ DK +KRK Sbjct: 195 KRSEQLEEDPSVKEAVGLTETNEQY--IKDLEVALKEFQSLSKEYDKAKMKKLKRKD--- 249 Query: 391 EKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNI--------- 239 S E D+ S L + EEEE +K + Sbjct: 250 ------------SSSDEDEEDEEENSSELSEIEEEEEEVKPVKKSKSSSQSVGKRKNRPK 297 Query: 238 KDTEKEDDIDAEIKKYTK--ETEGKFLSSLTKE--QKDIYDKEI 119 +E+ED+ + E +K + E EG + S +E +K+ DK + Sbjct: 298 STSEEEDEGEEESRKVAEDAEEEGIDIDSEIREHAEKEKKDKNV 341
>gi|3123259|sp|P08647|RAS_SCHPO RAS-LIKE PROTEIN 1 >gi|2330716|emb|CAB11218| (Z98597) Ras1p [Schizosaccharomyces pombe] Length = 219 Score = 32.1 bits (71), Expect = 3.7 Identities = 19/60 (31%), Positives = 29/60 (47%) Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416 + F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++ Sbjct: 81 EGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 132
>gi|172361 (K01970) RAS1 protein [Saccharomyces cerevisiae] Length = 309 Score = 32.1 bits (71), Expect = 3.7 Identities = 31/145 (21%), Positives = 64/145 (43%), Gaps = 2/145 (1%) Query: 523 EIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVS 344 E+ YQ+ R+KD D + ++ DL+ ++ + + L ++ + F T S Sbjct: 99 ELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLET--SAKQ 156 Query: 343 SFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFL 164 + D+ I + + + +++ R+ + I+D+E A+I+ K+ G ++ Sbjct: 157 AINVDEAFYSLIRLVRDDGGKYNSMNRQLDNTNEIRDSELTSSATADIE---KKNNGSYV 213 Query: 163 --SSLTKEQKDIYDKEILKMNRIYTKR 89 +SLT K + N TKR Sbjct: 214 LDNSLTNAGTGSSSKSAVNHNGETTKR 240
>gi|3845309 (AE001424) RESA-H3 antigen [Plasmodium falciparum] Length = 1558 Score = 32.1 bits (71), Expect = 3.7 Identities = 38/157 (24%), Positives = 67/157 (42%) Query: 640 IIKDYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE 461 +IKD +K+L A + + LE I+E +I + +KD++ +E Sbjct: 1025 LIKDMEKLKELEKALSEDSKEI-IDAKDDTLEKVIEEEHDITTTLDEVVELKDVEEDKIE 1083 Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEE 281 + +DL+++ +K +I +E L Y + +I + +K +E E Sbjct: 1084 KVSDLKDLEEDILKEVK-EIKELESEILEDYKELKTIETDILEEK-----------KEIE 1131 Query: 280 RDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGK 170 +D+ + EA IKD E DI E+ E E K Sbjct: 1132 KDHFEKFEEEAEEIKDLEA--DILKEVSSLEVEEEKK 1166
>gi|3878857|emb|CAB05583| (Z83120) predicted using Genefinder; cDNA EST EMBL:D35016 comes from this gene; cDNA EST EMBL:D32583 comes from this gene; cDNA EST EMBL:D35258 comes from this gene; cDNA EST EMBL:C11471 comes from this gene; cDNA EST EMBL:C136... Length = 837 Score = 32.1 bits (71), Expect = 3.7 Identities = 30/107 (28%), Positives = 54/107 (50%) Query: 442 DLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPR 263 ++D+ A I+RK + K +G +++S +LD+++K GE E+D + Sbjct: 449 EIDEEAEKLIERKFNV--KLRVGTDRSLISY--------RLLDAVVK--GEVVEKD---K 493 Query: 262 KCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKE 122 K EA I+ + DD DA++K+ E +GK + E D+ D + Sbjct: 494 KSEEAREIEAIDV-DDGDADVKQEVVEKDGKAEEAPEHEAMDVEDDD 539
>gi|2764713|emb|CAA05353| (AJ002379) sigma 70 [Campylobacter jejuni] Length = 622 Score = 32.1 bits (71), Expect = 3.7 Identities = 36/158 (22%), Positives = 78/158 (48%), Gaps = 16/158 (10%) Query: 547 ENEIKEITEIDEIYQRYLRI--------KDLDTFMLELLLYSEDLDKNAFINIKRKITLI 392 EN++ E + D + YLR KD + + + + ED+ +AF ++ I I Sbjct: 93 ENDLLEWSRSDSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFI 152 Query: 391 ---EKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKE 221 ++ + + + SF+ ++ D + ++ +E+E + + +E K+++KE Sbjct: 153 LDYKEPLINRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKE 212 Query: 220 DD----IDAEIKKYTKETEGKFLSSLTKEQKD-IYDKEILKMNRIYTKRKIINL 74 D+ + + K K + +S KE D + DK + + K K+++L Sbjct: 213 DERTLKVIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDL 266
>gi|68941|pir||TVBYPR transforming protein ras - fission yeast (Schizosaccharomyces pombe) >gi|5036|emb|CAA27399| (X03771) put. ras protein [Schizosaccharomyces pombe] Length = 214 Score = 32.1 bits (71), Expect = 3.7 Identities = 19/60 (31%), Positives = 29/60 (47%) Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAFIN 416 + F +V+N R S EI YQ+ LR+KD DTF + L+ DL+ ++ Sbjct: 76 EGFLLVYNITSRSS--------FDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVS 127
>gi|2132082|pir||S67087 hypothetical protein YOR195w - yeast (Saccharomyces cerevisiae) >gi|1420465|emb|CAA99408| (Z75103) ORF YOR195w [Saccharomyces cerevisiae] Length = 821 Score = 32.1 bits (71), Expect = 3.7 Identities = 42/145 (28%), Positives = 79/145 (53%), Gaps = 18/145 (12%) Query: 631 DYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEI--------DEIYQRYLRIKDLD 476 DY D QL I + NF +V KR EL ++I + ++ + + +Y ++ Sbjct: 292 DYDDDNQLDIRHDNFQIV---AKRNEELTDQIYHLNQMLNSLISKNESLSFQYEKLNKNH 348 Query: 475 TFMLELLLYSEDLDKNAFINIKRK--ITLIEKCS--LGFYSTILSIVSSFE------FDK 326 +++L +E LDK +N +R+ I +EK + +T + +++S + FD Sbjct: 349 QLLIDLT--NEKLDK---LNTERESDIAKVEKFKKRIKELNTEIKVLNSNQKILQEKFDA 403 Query: 325 NILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIK 197 +I + + I GE E N ++ + N K+ E E ++ AE+K Sbjct: 404 SITE-VNHIKGEHENTVNTLQQNEKILNDKNVELE-NMKAELK 444
>gi|530446|emb|CAA83773| (Z33128) DNA repair protein RecM [Mycoplasma capricolum] Length = 107 Score = 32.1 bits (71), Expect = 3.7 Identities = 17/54 (31%), Positives = 32/54 (58%), Gaps = 2/54 (3%) Query: 190 TKETEGKFLSSL--TKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDNR 29 TK+T + L +L K++ D + ++ K+N++ + KI + N CL+ +DNR Sbjct: 20 TKKTSERLLVNLLLNKDKLDEFINQLNKVNQLISTCKICGYLSENNKCLVCSLDNR 75
>gi|3549665|emb|CAA20576| (AL031394) hypothetical protein [Arabidopsis thaliana] Length = 750 Score = 32.1 bits (71), Expect = 3.7 Identities = 18/72 (25%), Positives = 37/72 (51%) Query: 361 ILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKE 182 ++ + + DK+ + +++ + +EE+ +N +I+D + EDD AEI + + Sbjct: 413 VMKVTAPGRVDKDFISKVIEQIADEEDEEN-------DLDIEDIDVEDDTKAEIDEKNAD 465 Query: 181 TEGKFLSSLTKE 146 E L S+T E Sbjct: 466 IE---LESVTDE 474
>gi|2688777 (AE001181) exonuclease SbcC (sbcC) [Borrelia burgdorferi] Length = 950 Score = 31.7 bits (70), Expect = 4.8 Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 29/209 (13%) Query: 640 IIKDYADIKQLT-IAYKNFNMVFNFQKRLSELENEIKEITEI-----DEIYQRYLRIKDL 479 + D+ +K L + + FN + LS++ N ++EI ++ + Y + L K+ Sbjct: 299 LCSDFWSLKNLVAVQGELFNDIGLLDLELSKVMNNLEEIKDLYSNDFNFNYVKELYNKNC 358 Query: 478 DTFMLELL---LYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSI 308 + F L+L+ S L KN+ + K+++ + +I S S+F+FDK + Sbjct: 359 NLFNLKLVENDYQSLLLRKNSLEDEKKELLRSQSKKNDEIKSISSEKSNFDFDKYVYYEA 418 Query: 307 LKIVGEEEERDNIPRKCNEAXN--IKDTEKED------------DIDAEIKKY------T 188 LK+ + D + K + +K T KED D+ E+ KY + Sbjct: 419 LKLF--QTFNDELISKYRDRLEFLLKSTGKEDFNKNKEKNIIKIDLYKELLKYLDDKNFS 476 Query: 187 KETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLK 14 E++ + L + E K+ K+ L + + +++ L K++ I N+ +LK Sbjct: 477 IESDKEKLKYIEAEYKNYQHKDKLSLCSL---KELYALNSKLH-----LIQNQIDELK 526
>gi|3764023|emb|CAA15616| (AL008970) predicted using hexExon; MAL3P4.26 (PFC0435w), Hypothetical protein, len: 1295 aa [Plasmodium falciparum] Length = 1294 Score = 31.7 bits (70), Expect = 4.8 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 17/163 (10%) Query: 508 YQRYLRIK-DLDTFMLELLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEF 332 Y +Y I + D + + +E++ N+ K K+ I Y T+L + Sbjct: 459 YDKYHMINLENDIKLKHYIKETEEIHFNSIEEYKMKLNRINYK----YDTLLEEHENLVT 514 Query: 331 DKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTE---KEDDIDAEIKKYTKETEGKFLS 161 KNIL I + EEER IP N N ++T+ + D ++K+ K T G + + Sbjct: 515 HKNILIGIKTSINTEEER--IPHIKNTYDNKENTQIIFNTFNYDNKLKE--KNTFGFYNN 570 Query: 160 SLTKEQKD--------IY--DKEILKMNRIYTKRKIIN---LRRKMNHCLISFIDNRFKK 20 SL + + IY DKE K + +Y K+ + L K+ H + + + K Sbjct: 571 SLLQNALENDNIDLDIIYMSDKESQKYDNLYFNSKVTSKEGLCEKLKHMIYYYYEEYVMK 630
>gi|4100186|gb|AAD00774| (U95159) gelsolin-related protein GRP125 [Dictyostelium discoideum] Length = 1087 Score = 31.7 bits (70), Expect = 4.8 Identities = 19/75 (25%), Positives = 36/75 (47%) Query: 298 VGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEI 119 V EEE ++ + E +KE++++ EIK+ TKE E TKE + D+++ Sbjct: 846 VKEEEVKEEVKEVKEEVKEEVKQDKEEEVNEEIKEETKEEE-------TKEDDNKEDEKV 898 Query: 118 LKMNRIYTKRKIINL 74 + N + + + Sbjct: 899 NEENETVNEENEVGI 913
>gi|4499900|emb|CAB39319| (AJ133736) BM-40 [Drosophila melanogaster] Length = 304 Score = 31.7 bits (70), Expect = 4.8 Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 352 IVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEI 200 + +S EF +++LD L + +E + R E IKD E+E++I ++ Sbjct: 18 VQASTEFSEDLLDEDLDLSDIDENEEEFLRLLEEKNKIKDIERENEIATKL 68
>gi|2633508|emb|CAB13011| (Z99110) similar to oligoendopeptidase [Bacillus subtilis] Length = 609 Score = 31.7 bits (70), Expect = 4.8 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 337 EFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSS 158 E KN D++ K G+ K A + T K+D+ A +KKY E ++ Sbjct: 217 EVRKNAFDAVYKTYGQY--------KNTMATTLSGTVKKDNFYARVKKYKSAREAALSNN 268 Query: 157 LTKEQKDIYDKEILKMNR-IYTKRKIINLRRKM 62 E ++YD + +N+ + + I LR+K+ Sbjct: 269 SIPE--EVYDNLVKTINKHLPLLHRYIALRKKV 299
>gi|2425133 (AF020282) DG2033 gene product [Dictyostelium discoideum] Length = 1271 Score = 31.7 bits (70), Expect = 4.8 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 17/163 (10%) Query: 547 ENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKN--------AFI------NIK 410 ENEIK IT I Q + K++ + +L+ +++ N FI N Sbjct: 119 ENEIKNITIIISKIQNLIFNKEIYSTCCQLINGISNINNNNNNSNKYGLFIVNNILNNEN 178 Query: 409 RKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDT 230 +++IEK S+ FY T++ ++ + +I++ K ++ + + + N+ Sbjct: 179 LSLSIIEKMSIEFYPTLIPVIIENLENSSIINQYTK----QQSLSILSKILLDKNNVSII 234 Query: 229 EKEDDIDAEIKKYTKETEG-KFLSSLTKEQKDIYD--KEILKMNRIYTKRKIINLRRKMN 59 E +I K +T K L + +QKDI + K ++ Y + NL++K N Sbjct: 235 ENN-----QILKSLYQTNWLKLLWNAIVKQKDINERLKLCFFFHQCYFDCLLFNLKKKSN 289
>gi|1651216|dbj|BAA13561| (D88209) Pz-peptidase [Bacillus licheniformis] Length = 628 Score = 31.7 bits (70), Expect = 4.8 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 337 EFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSS 158 E KN D++ K G+ K A + T K+D+ A +KKY E ++ Sbjct: 236 EVRKNAFDAVYKTYGQY--------KNTMATTLSGTVKKDNFYARVKKYKSAREAALSNN 287 Query: 157 LTKEQKDIYDKEILKMNR-IYTKRKIINLRRKM 62 E ++YD + +N+ + + I LR+K+ Sbjct: 288 SIPE--EVYDNLVKTINKHLPLLHRYIALRKKV 318
>gi|3764001|emb|CAA15594| (AL008970) predicted using hexExon; MAL3P4.3 (PFC0560c), Hypothetical protein, len: 785 aa [Plasmodium falciparum] Length = 784 Score = 31.3 bits (69), Expect = 6.3 Identities = 27/98 (27%), Positives = 49/98 (49%), Gaps = 2/98 (2%) Query: 325 NILDSILKIVGEEEERD--NIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLT 152 ++ D+I IV EE ++D ++PRK + K E +++ + + K+Y + K Sbjct: 381 SLTDTIFYIV-EENDKDLHDVPRK-EKKIYAKYKEGQEEQEKKNKRYDNSDDKK---GSE 435 Query: 151 KEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDN 32 E ++Y+KE + Y +KI K+N I+F N Sbjct: 436 YEHVNLYNKEDKTLTLQYKNKKIPTSHDKLNKHNITFYKN 475
>gi|2314562|gb|AAD08433| (AE000639) DNA repair protein (recN) [Helicobacter pylori 26695] Length = 524 Score = 31.3 bits (69), Expect = 6.3 Identities = 25/104 (24%), Positives = 52/104 (49%), Gaps = 9/104 (8%) Query: 595 KNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDK----- 431 K++ + + ++RL ++NE+ + EID + Y K+++ E L E++ Sbjct: 296 KDYGSIMHAKERLGHVKNELHNLKEIDSHCETY--HKEIERLKTECLKLCEEISGFRKEY 353 Query: 430 ----NAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEE 284 NA ++ K K L++ SL +S + + N+ +S L+ + E Sbjct: 354 LAGFNALLSAKAKDLLLKSPSLVLEDAPMSEKGAQKLVLNLQNSQLETLSSGE 406
>gi|1723436|sp|Q10251|YD23_SCHPO HYPOTHETICAL 119.9 KD PROTEIN C56F8.03 IN CHROMOSOME I >gi|1204225|emb|CAA93574| (Z69728) unknown [Schizosaccharomyces pombe] Length = 1079 Score = 31.3 bits (69), Expect = 6.3 Identities = 20/76 (26%), Positives = 35/76 (45%) Query: 337 EFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSS 158 E ++ I + +I EE+ + E +K EKE KK + +GK+LS Sbjct: 262 EEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERK-----KKEEMKAQGKYLSK 316 Query: 157 LTKEQKDIYDKEILKM 110 KEQ+ + + + +M Sbjct: 317 KQKEQQALAQRRLQQM 332
>gi|4493892|emb|CAB39001| (AL034558) predicted using hexExon; MAL3P2.14 (PFC0225c), Elongation factor (TS), len: 350 aa; Similarity to elongation factor TS. Aquifex elongation factor TS (SW:EFTS_AQUAE) BLAST Score: 161, sum P(2) = 4.9e-19, 30% identit... Length = 349 Score = 31.3 bits (69), Expect = 6.3 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 17/110 (15%) Query: 493 RIKDLDTFMLELLLYSEDLDKNA----FINIKRKITLIEKCSLGF-------------YS 365 +IKD +LELL S+ + +N F+ +TL S+G Y+ Sbjct: 117 QIKDDKIVLLELLTDSDFVARNKMFVQFVYSLLNVTLDNDLSVGNCKNAGDNKNSEDGYT 176 Query: 364 TILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTK 185 T +I+S+ NI+D IL + +EE + + +++ +ED KY+K Sbjct: 177 TSGNILSN----NNIMDEILSLPYVDEENKSNSTMREQLNYLRNIFREDIKIGRFSKYSK 232 Query: 184 ETEGKFL 164 + +FL Sbjct: 233 KNPNEFL 239
>gi|1707030 (U80444) F26B1.1 [Caenorhabditis elegans] Length = 261 Score = 31.3 bits (69), Expect = 6.3 Identities = 20/69 (28%), Positives = 33/69 (46%) Query: 265 RKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRK 86 +K E+ K T+KE+D D+E K K+ + K +KD+ D E N K+K Sbjct: 47 KKKKESKKRKKTQKEEDCDSESIKQKKKKARVKKKEVRKSKKDVEDDED-DSNSKSAKKK 105 Query: 85 IINLRRKMN 59 + + + N Sbjct: 106 AVKVAKVYN 114
>gi|1216294 (L35238) non-muscle tropomyosin [Xenopus laevis] Length = 248 Score = 31.3 bits (69), Expect = 6.3 Identities = 28/64 (43%), Positives = 36/64 (55%), Gaps = 8/64 (12%) Query: 313 SILKIVGEEEERDNIPR--KCNEAXNIKDTEKEDDIDAEIKKYT-----KETEGKFLS-S 158 S LK EEE N+ K EA + K +EKED + EIK T ET +F + Sbjct: 150 SELKCSDLEEELKNVTNNLKSLEAQSEKYSEKEDKYEEEIKILTDKLKEAETRAEFAERT 209 Query: 157 LTKEQKDIYDKE 122 +TK +K I D E Sbjct: 210 VTKHEKAIDDLE 221
>gi|585379|sp|P33399|LAH1_YEAST LA PROTEIN HOMOLOG (LA RIBONUCLEOPROTEIN) (LA AUTOANTIGEN HOMOLOG) >gi|1078375|pir||B48600 RNA-binding protein LAH1 - yeast (Saccharomyces cerevisiae) >gi|458557 (L13282) La homolog [Saccharomyces cerevisiae] >gi|493220 (L33023) La protein homologue; phenotype: not essential for vegetative growth [Saccharomyces cerevisiae] >gi|1431044|emb|CAA98612| (Z74099) ORF YDL051w [Saccharomyces cerevisiae] Length = 275 Score = 30.9 bits (68), Expect = 8.3 Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 30/204 (14%) Query: 619 IKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSED 440 +KQ+ + FN ++ R + +N+ + R + + +D ++E L SE Sbjct: 34 LKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRPVDK-VIEALRSSEI 92 Query: 439 LDKNAF-INIKRKITL---------IEK-----CSLGFYSTILSIVSSFEFDKNILDSIL 305 L+ +A N+KR++ L IE+ + F + E +N L++ Sbjct: 93 LEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPELQEN-LEAFF 151 Query: 304 KIVGEEEE----RDNIPRKCN-----EAXNIKDTE------KEDDIDAEIKKYTKETEGK 170 K +GE + RD+ +K N E I + E DD EI Y EGK Sbjct: 152 KKLGEINQVRLRRDHRNKKFNGTVLVEFKTIPECEAFLKSYSNDDESNEILSY----EGK 207 Query: 169 FLSSLTKEQKDIYDKEILKMNRIYTKRKIINLRRKMNHCLISFIDNRFKKLKGE 8 LS LTK+Q D+ +E K + + N +K N L F N+ K K E Sbjct: 208 KLSVLTKKQFDL-QREASKSKNFSGRSRSFNGHKKKN--LPKFPKNKKKNGKEE 258
>gi|1256281 (U53180) D1014.4 gene product [Caenorhabditis elegans] Length = 202 Score = 30.9 bits (68), Expect = 8.3 Identities = 18/63 (28%), Positives = 41/63 (64%), Gaps = 5/63 (7%) Query: 328 KNILDSILKIVGEEEERDNIP----RKCNEAXNIKDTEKE-DDIDAEIKKYTKETEGKFL 164 +++ + +L +V E + +DN R+ +EA +K+++K + ++A +Y + +G+F Sbjct: 33 ESLENRLLDVVEENDRKDNENSERIRQLDEA--LKESQKRVEQLEAACFRYKNQAKGEFA 90 Query: 163 SSLTKEQK 140 SS+ E+K Sbjct: 91 SSIKSEEK 98
>gi|2129335|pir||D64315 type I restriction enzyme homolog - Methanococcus jannaschii Length = 1163 Score = 30.9 bits (68), Expect = 8.3 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%) Query: 451 YSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDN 272 + E + + F I ++I I K Y I SI S +K I+ I ++ + + Sbjct: 341 FYEAIQEKKFKTILKRIDSINK----LYEVIKSIKMSELSNKVIVRGIYTTTIQKFQYE- 395 Query: 271 IPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKD--------------- 137 R E N K+ +K+D+ D ++ K +E K L KE+K+ Sbjct: 396 --RSKKEKDNNKEKDKDDE-DLDLSKPIEEIIKKIEDKLKKEEKEGKIKGLKDLLIILAF 452 Query: 136 IYDKEILKMNRIYTKRKIINLRR 68 IY K + + N K+ I NL++ Sbjct: 453 IYLKHLKEKNPEEYKKHIENLKK 475
>gi|4493965|emb|CAB39024| (AL034559) predicted using hexExon; MAL3P7.4 (PFC0875w), Hypothetical protein, len: 3004 aa [Plasmodium falciparum] Length = 3003 Score = 30.9 bits (68), Expect = 8.3 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 7/195 (3%) Query: 595 KNFNMVFNFQKRLSELE--NEIKEITEIDEIYQRYLRIKDLDTFMLELLLYSEDLDKNAF 422 KN N F F ++L L+ N + E IY+ Y E +D N + Sbjct: 2227 KNRNPFFYFIQKLFNLKRGNNVDENNTTMGIYK-----------------YGEKVDSNNY 2269 Query: 421 I-----NIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKC 257 I NI ++ Y L+ + +FD N +D ++I + ++ + K Sbjct: 2270 ISEDEININNQLNSEGYLKNDIYMNELNDNYNNDFDDNTVDIEMQISEKSNIKEKMLYKE 2329 Query: 256 NEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEILKMNRIYTKRKIIN 77 E + +DD D E K + K ++ L +L + ++ +IYT I N Sbjct: 2330 TEIDKYYKGQSDDDNDEE-KNFNKISQKYILKNLNIK---------MRPYKIYTFSSIFN 2379 Query: 76 LRRKMNHCLISFIDNRFKKLKG 11 + + F N LKG Sbjct: 2380 NDLNILYFFKYFFCNNKDNLKG 2401
>gi|2649480 (AE001027) conserved hypothetical protein [Archaeoglobus fulgidus] Length = 288 Score = 30.9 bits (68), Expect = 8.3 Identities = 31/97 (31%), Positives = 48/97 (48%), Gaps = 2/97 (2%) Query: 367 STILSIVSSFEFDKNILDSILKIVGEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYT 188 + I+SIV + FD + K+V EEE RD + RK E I DTE+ ++ + Y Sbjct: 103 AVIVSIVGN-NFDYGVQGH--KVV-EEEFRDFLKRKVQEGLKINDTERIKELSSGKVVYL 158 Query: 187 KETEGK--FLSSLTKEQKDIYDKEILKMNRIYTKRKIIN 77 + G+ F + L KE K + K+ + R II+ Sbjct: 159 TDNAGEIFFDTLLMKEIK----RRCEKLTAVVRGRPIIS 193
>gi|3915925|sp|Q57588|Y124_METJA HYPOTHETICAL PROTEIN MJ0124 >gi|2826244 (U67469) type I restriction-modification enzyme 2, R subunit [Methanococcus jannaschii] Length = 1075 Score = 30.9 bits (68), Expect = 8.3 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%) Query: 451 YSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILDSILKIVGEEEERDN 272 + E + + F I ++I I K Y I SI S +K I+ I ++ + + Sbjct: 253 FYEAIQEKKFKTILKRIDSINK----LYEVIKSIKMSELSNKVIVRGIYTTTIQKFQYE- 307 Query: 271 IPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKD--------------- 137 R E N K+ +K+D+ D ++ K +E K L KE+K+ Sbjct: 308 --RSKKEKDNNKEKDKDDE-DLDLSKPIEEIIKKIEDKLKKEEKEGKIKGLKDLLIILAF 364 Query: 136 IYDKEILKMNRIYTKRKIINLRR 68 IY K + + N K+ I NL++ Sbjct: 365 IYLKHLKEKNPEEYKKHIENLKK 387
>gi|4240313|dbj|BAA74935| (AB020719) KIAA0912 protein [Homo sapiens] Length = 1300 Score = 30.9 bits (68), Expect = 8.3 Identities = 44/165 (26%), Positives = 75/165 (44%), Gaps = 9/165 (5%) Query: 640 IIKDYADIKQLTIAYKNFNMVFNFQKRLSELENEIKEITEIDEIYQRYLRIKDLDTFMLE 461 + K + +QL AY+ ++ SEL+ KE+T + E Y R KD LE Sbjct: 626 LAKHALEKQQLFEAYERTHLQLR-----SELDKLNKEVTAVQECYLEVCREKD----NLE 676 Query: 460 LLLYSEDLDKNAFINIKRKITLIEKCSLGFYSTILSIVSSFEFDKNILD--------SIL 305 L L + +K K K LI++ + S + + + + K LD + Sbjct: 677 LTL-RKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMK--KKTLDCGSQTDQVTTS 733 Query: 304 KIVGEEEERDNI-PRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKE 146 ++ ++E I +KC N+ + EK+ I +KK E E K ++TK+ Sbjct: 734 DVISKKEMAIMIEEQKCTIQQNL-EQEKDIAIKGAMKKLEIELELKHCENITKQ 786
>gi|508233 (U09358) Rca1p [Saccharomyces cerevisiae] Length = 825 Score = 30.9 bits (68), Expect = 8.3 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 295 GEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEIL 116 G + E +N K N+ I E+ + I +++KY ++T+ + + KEQK D+ I Sbjct: 48 GNKNEDNNEDAKLNK--EIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIR 105 Query: 115 KM---------NRIYTKRK 86 ++ NRI +RK Sbjct: 106 RLEDAVLKQESNRIQEERK 124
>gi|531754|emb|CAA56955| (X81068) probable mitochondrial protein [Saccharomyces cerevisiae] Length = 825 Score = 30.9 bits (68), Expect = 8.3 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 295 GEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEIL 116 G + E +N K N+ I E+ + I +++KY ++T+ + + KEQK D+ I Sbjct: 48 GNKNEDNNEDAKLNK--EIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIR 105 Query: 115 KM---------NRIYTKRK 86 ++ NRI +RK Sbjct: 106 RLEDAVLKQESNRIQEERK 124
>gi|1710045|sp|P40341|RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN COMPLEXES ASSEMBLY PROTEIN RCA1 (TAT-BINDING HOMOLOG 12) >gi|1078319|pir||S54465 YTA12 protein precursor, mitochondrial - yeast (Saccharomyces cerevisiae) >gi|807972|emb|CAA89236| (Z49259) Rca1p [Saccharomyces cerevisiae] Length = 825 Score = 30.9 bits (68), Expect = 8.3 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 295 GEEEERDNIPRKCNEAXNIKDTEKEDDIDAEIKKYTKETEGKFLSSLTKEQKDIYDKEIL 116 G + E +N K N+ I E+ + I +++KY ++T+ + + KEQK D+ I Sbjct: 48 GNKNEDNNEDAKLNK--EIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIR 105 Query: 115 KM---------NRIYTKRK 86 ++ NRI +RK Sbjct: 106 RLEDAVLKQESNRIQEERK 124 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 17, 1999 5:33 AM Number of letters in database: 113,023,754 Number of sequences in database: 369,800 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83563309 Number of Sequences: 369800 Number of extensions: 1365430 Number of successful extensions: 7474 Number of sequences better than 10.0: 132 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 67 Number of HSP's that attempted gapping in prelim test: 7433 Number of HSP's gapped (non-prelim): 112 length of query: 213 length of database: 113023754 effective HSP length: 53 effective length of query: 160 effective length of database: 93424354 effective search space: 14947896640 effective search space used: 14947896640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 67 (30.5 bits)