BLASTX 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11VII20R
         (863 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           369,800 sequences; 113,023,754 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|103353|pir||A32713 reverse transcriptase homolog - fruit fly ...    41  2e-04
gi|157344 (M17214) reverse transcriptase (put.); putative [Droso...    41  2e-04
gi|103221|pir||S13329 hypothetical protein 2 - fruit fly (Drosop...    37  0.16
gi|8823|emb|CAA35587| (X17551) ORF2 for putative reverse transcr...    37  0.16
gi|134083|sp|P21328|RTJK_DROME RNA-DIRECTED DNA POLYMERASE FROM ...    36  0.47
gi|3880735|emb|CAA21592| (AL032632) Y11D7A.13 [Caenorhabditis el...    34  1.8
gi|1362627|pir||S55543 reverse transcriptase - fruit fly (Drosop...    33  3.1
gi|2133713|pir||S55544 reverse transcriptase - fruit fly (Drosop...    33  3.1
gi|133607|sp|P27176|RRPL_PUUMH RNA-DIRECTED RNA POLYMERASE (L PR...    32  5.4
gi|3282366 (AF012049) reverse transcriptase [Drosophila yakuba]        32  5.4


>gi|103353|pir||A32713 reverse transcriptase homolog - fruit fly (Drosophila melanogaster) Length = 859 Score = 40.6 bits (93), Expect = 2e-04 Identities = 23/72 (31%), Positives = 39/72 (53%), Gaps = 1/72 (1%) Query: 171 KVQIVKSVLVPIATYGAKLYG-ISASRVSPLQRVMDNAVRTILSAPSNYCRQAAFSELGL 347 KV + S+L PI TYG++L+G S S + +QR +RTI AP + +L + Sbjct: 785 KVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNI 844 Query: 348 ESIQPGVAKLRTR 386 S+ + +L+ + Sbjct: 845 PSVTNAITELKEK 857 Score = 25.4 bits (54), Expect = 2e-04 Identities = 13/36 (36%), Positives = 17/36 (47%) Query: 7 NGSPLPVVDRYTYLGTPFTQTLCLDAIIEDRKEKAR 114 N PLP D TYLG + L IE +K + + Sbjct: 729 NSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLK 764
>gi|157344 (M17214) reverse transcriptase (put.); putative [Drosophila melanogaster] Length = 858 Score = 40.6 bits (93), Expect = 2e-04 Identities = 23/72 (31%), Positives = 39/72 (53%), Gaps = 1/72 (1%) Query: 171 KVQIVKSVLVPIATYGAKLYG-ISASRVSPLQRVMDNAVRTILSAPSNYCRQAAFSELGL 347 KV + S+L PI TYG++L+G S S + +QR +RTI AP + +L + Sbjct: 784 KVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNI 843 Query: 348 ESIQPGVAKLRTR 386 S+ + +L+ + Sbjct: 844 PSVTNAITELKEK 856 Score = 25.4 bits (54), Expect = 2e-04 Identities = 13/36 (36%), Positives = 17/36 (47%) Query: 7 NGSPLPVVDRYTYLGTPFTQTLCLDAIIEDRKEKAR 114 N PLP D TYLG + L IE +K + + Sbjct: 728 NSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLK 763
>gi|103221|pir||S13329 hypothetical protein 2 - fruit fly (Drosophila melanogaster) Length = 964 Score = 37.1 bits (84), Expect = 0.16 Identities = 23/80 (28%), Positives = 41/80 (50%), Gaps = 1/80 (1%) Query: 147 RKNVPVPVKVQIVKSVLVPIATYGAKLYG-ISASRVSPLQRVMDNAVRTILSAPSNYCRQ 323 R + + K + SVL PI TYG++L+G S S + +QR +R I AP + Sbjct: 850 RSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNE 909 Query: 324 AAFSELGLESIQPGVAKLRTR 386 +L ++ + +A+ +T+ Sbjct: 910 NIHRDLKIKLVIEVIAEKKTK 930
>gi|8823|emb|CAA35587| (X17551) ORF2 for putative reverse transcriptase [Drosophila melanogaster] Length = 888 Score = 37.1 bits (84), Expect = 0.16 Identities = 23/80 (28%), Positives = 41/80 (50%), Gaps = 1/80 (1%) Query: 147 RKNVPVPVKVQIVKSVLVPIATYGAKLYG-ISASRVSPLQRVMDNAVRTILSAPSNYCRQ 323 R + + K + SVL PI TYG++L+G S S + +QR +R I AP + Sbjct: 774 RSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNE 833 Query: 324 AAFSELGLESIQPGVAKLRTR 386 +L ++ + +A+ +T+ Sbjct: 834 NIHRDLKIKLVIEVIAEKKTK 854
>gi|134083|sp|P21328|RTJK_DROME RNA-DIRECTED DNA POLYMERASE FROM MOBILE ELEMENT JOCKEY (REVERSE TRANSCRIPTASE) >gi|85128|pir||JT0396 reverse transcriptase homolog - fruit fly (Drosophila melanogaster) transposon jockey >gi|157825 (M22874) ORF2, reverse transcriptase (put.); putative [Drosophila melanogaster] Length = 916 Score = 35.6 bits (80), Expect = 0.47 Identities = 19/53 (35%), Positives = 31/53 (57%), Gaps = 1/53 (1%) Query: 147 RKNVPVPVKVQIVKSVLVPIATYGAKLYGISA-SRVSPLQRVMDNAVRTILSAP 305 R + + KV I KS+L P YG ++YGI+A S ++ ++ + +R I AP Sbjct: 788 RNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAP 841
>gi|3880735|emb|CAA21592| (AL032632) Y11D7A.13 [Caenorhabditis elegans] Length = 440 Score = 33.6 bits (75), Expect = 1.8 Identities = 24/82 (29%), Positives = 46/82 (55%), Gaps = 12/82 (14%) Query: 661 LAANSLGGIRRILPPSLILPMTDLSRET-----------SLFLITSAINSTFL*SGTRDS 515 L+ N + +LPPSL+ P +DL ET ++ ++ S N+ G + Sbjct: 219 LSLNGPQQTKNLLPPSLLTPKSDLEDETLSTKTEQKNASTMNILLSMTNNC---DGRKPI 275 Query: 514 STACPNLFSHLADPETHVAHLVLGKASI-NKEIQ 416 + P+LF+ +++ E H + L K + N+E++ Sbjct: 276 TLRLPDLFNKISEMEIHDMEMTLTKFLLENRELR 309
>gi|1362627|pir||S55543 reverse transcriptase - fruit fly (Drosophila melanogaster) Length = 860 Score = 32.8 bits (73), Expect = 3.1 Identities = 22/82 (26%), Positives = 43/82 (51%), Gaps = 2/82 (2%) Query: 141 LNRKN-VPVPVKVQIVKSVLVPIATYGAKLYGISA-SRVSPLQRVMDNAVRTILSAPSNY 314 LNRK+ + + K + + PI YG +++GI+A S + +Q + + A+R I P Sbjct: 740 LNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYV 799 Query: 315 CRQAAFSELGLESIQPGVAKLRTR 386 +L L +++ ++K +R Sbjct: 800 RGTTLHRDLNLHTVEEQISKHTSR 823
>gi|2133713|pir||S55544 reverse transcriptase - fruit fly (Drosophila melanogaster) (fragment) Length = 804 Score = 32.8 bits (73), Expect = 3.1 Identities = 22/82 (26%), Positives = 43/82 (51%), Gaps = 2/82 (2%) Query: 141 LNRKN-VPVPVKVQIVKSVLVPIATYGAKLYGISA-SRVSPLQRVMDNAVRTILSAPSNY 314 LNRK+ + + K + + PI YG +++GI+A S + +Q + + A+R I P Sbjct: 684 LNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYV 743 Query: 315 CRQAAFSELGLESIQPGVAKLRTR 386 +L L +++ ++K +R Sbjct: 744 RGTTLHRDLNLHTVEEQISKHTSR 767
>gi|133607|sp|P27176|RRPL_PUUMH RNA-DIRECTED RNA POLYMERASE (L PROTEIN) >gi|67086|pir||RRVUNE RNA-directed RNA polymerase (EC 2.7.7.48) - Puumala virus (strain Hallnas B1) Length = 2156 Score = 32.1 bits (71), Expect = 5.4 Identities = 23/77 (29%), Positives = 41/77 (52%), Gaps = 4/77 (5%) Query: 240 ASRVSPLQRVMDNAVRT-ILSAPSNYCRQAAFSELGLESIQPGVAKLRTRDFLKWKNSRT 416 AS+V + V+D+A+ LS R+ + ELGL+ QP V K L +K+ ++ Sbjct: 1512 ASKVDEISDVLDSAIHPDSLSTDLQLMREGVYRELGLDISQPNVLKKVAP--LLYKSGKS 1569 Query: 417 WISLL---IEAFPRTRCATWV 470 I ++ +E + C+ W+ Sbjct: 1570 RIVIVQGNVEGTAESICSYWL 1590
>gi|3282366 (AF012049) reverse transcriptase [Drosophila yakuba] Length = 439 Score = 32.1 bits (71), Expect = 5.4 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 141 LNRKN-VPVPVKVQIVKSVLVPIATYGAKLYGISA-SRVSPLQRVMDNAVRTILSAPSNY 314 +NR+N + + K + ++PI YG +++GI+A S +Q + + A+R I + P Sbjct: 334 MNRRNTLSLRCKRAVYAHCILPIWLYGIQIWGIAAKSNYKRIQVMQNRALRQITNCPWYV 393 Query: 315 CRQAAFSELGLESIQPGVAKLRTR 386 +L L +++ + + +R Sbjct: 394 RNSTLHKDLNLYTVEEQIGRHTSR 417 Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Apr 17, 1999 5:33 AM Number of letters in database: 113,023,754 Number of sequences in database: 369,800 Lambda K H 0.318 0.135 0.00 Gapped Lambda K H 0.270 0.0470 4.94e-324 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179197908 Number of Sequences: 369800 Number of extensions: 3695883 Number of successful extensions: 8352 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 8347 Number of HSP's gapped (non-prelim): 12 length of query: 287 length of database: 113023754 effective HSP length: 54 effective length of query: 233 effective length of database: 93054554 effective search space: 21681711082 effective search space used: 21681711082 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 69 (31.3 bits)