BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11VII18F
(892 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2498886|sp|Q15437|S23B_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 ... 136 2e-31
gi|2498884|sp|Q01405|S23A_MOUSE PROTEIN TRANSPORT PROTEIN SEC23 ... 133 1e-30
gi|2137751|pir||I60247 SEC23 protein homolog, 64.7K - mouse >gi|... 133 1e-30
gi|2498885|sp|Q15436|S23A_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 ... 133 1e-30
gi|3702631|emb|CAA21224| (AL031824) protein transport protein se... 90 2e-17
gi|134277|sp|P15303|SC23_YEAST PROTEIN TRANSPORT PROTEIN SEC23 >... 80 2e-14
gi|4176521|emb|CAA22877| (AL035263) protein transport protein se... 67 2e-10
gi|3935152 (AC005106) T25N20.16 [Arabidopsis thaliana] 64 2e-09
gi|2244772|emb|CAB10195| (Z97335) transport protein [Arabidopsis... 55 9e-07
gi|4567227|gb|AAD23642|AC007119_8 (AC007119) putative transport ... 45 6e-04
gi|632243|pir||JC2285 secretion protein Y - pea aphid symbiont b... 32 7.3
>gi|2498886|sp|Q15437|S23B_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM B
>gi|1296666|emb|CAA65775| (X97065) Sec23 protein [Homo
sapiens]
Length = 767
Score = 136 bits (339), Expect = 2e-31
Identities = 60/73 (82%), Positives = 68/73 (92%)
Query: 252 MATYQDFIQQNEDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVL 431
MATY +FIQQNE+RDGVRFSWN+WPSSRLE+TR+VVP++CL TP+KER DLPPVQYEPVL
Sbjct: 1 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL 60
Query: 432 CSRANCKAVLNPL 470
CSR CKAVLNPL
Sbjct: 61 CSRPTCKAVLNPL 73
>gi|2498884|sp|Q01405|S23A_MOUSE PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM A
Length = 623
Score = 133 bits (332), Expect = 1e-30
Identities = 58/73 (79%), Positives = 67/73 (91%)
Query: 252 MATYQDFIQQNEDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVL 431
M TY +FIQQNE+RDGVRFSWN+WPSSRLE+TR+VVPV+ LFTP+KER DLPP+QYEPVL
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 432 CSRANCKAVLNPL 470
CSR C+AVLNPL
Sbjct: 61 CSRTTCRAVLNPL 73
>gi|2137751|pir||I60247 SEC23 protein homolog, 64.7K - mouse >gi|220494|dbj|BAA02209|
(D12713) MSEC66 [Mus musculus]
Length = 573
Score = 133 bits (332), Expect = 1e-30
Identities = 58/73 (79%), Positives = 67/73 (91%)
Query: 252 MATYQDFIQQNEDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVL 431
M TY +FIQQNE+RDGVRFSWN+WPSSRLE+TR+VVPV+ LFTP+KER DLPP+QYEPVL
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 432 CSRANCKAVLNPL 470
CSR C+AVLNPL
Sbjct: 61 CSRTTCRAVLNPL 73
>gi|2498885|sp|Q15436|S23A_HUMAN PROTEIN TRANSPORT PROTEIN SEC23 HOMOLOG ISOFORM A
>gi|1296664|emb|CAA65774| (X97064) Sec23 protein [Homo
sapiens]
Length = 765
Score = 133 bits (332), Expect = 1e-30
Identities = 58/73 (79%), Positives = 67/73 (91%)
Query: 252 MATYQDFIQQNEDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVL 431
M TY +FIQQNE+RDGVRFSWN+WPSSRLE+TR+VVPV+ LFTP+KER DLPP+QYEPVL
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 432 CSRANCKAVLNPL 470
CSR C+AVLNPL
Sbjct: 61 CSRTTCRAVLNPL 73
>gi|3702631|emb|CAA21224| (AL031824) protein transport protein sec23 homolog
[Schizosaccharomyces pombe]
Length = 759
Score = 90.1 bits (220), Expect = 2e-17
Identities = 38/64 (59%), Positives = 54/64 (84%)
Query: 276 QQNEDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVLCSRANCKA 455
++ E+RDGVRF+WN++PS+R+ES+R +VP++ ++ P+ ER DLPPV YEPV C +A CKA
Sbjct: 4 EEIEERDGVRFTWNVFPSTRIESSRTIVPIASIYKPLNERPDLPPVLYEPVTC-KAPCKA 62
Query: 456 VLNP 467
VLNP
Sbjct: 63 VLNP 66
>gi|134277|sp|P15303|SC23_YEAST PROTEIN TRANSPORT PROTEIN SEC23 >gi|73083|pir||BVBY23 protein
transport protein SEC23 - yeast (Saccharomyces
cerevisiae) >gi|4443|emb|CAA33501| (X15474) SEC23 gene
product (AA 1 - 768) [Saccharomyces cerevisiae]
>gi|786326 (U25842) Protein transport protein Sec23p
(Swiss Prot. accession number P15303) [Saccharomyces
cerevisiae]
Length = 768
Score = 80.0 bits (194), Expect = 2e-14
Identities = 33/64 (51%), Positives = 48/64 (74%)
Query: 276 QQNEDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVLCSRANCKA 455
+ NED +GVRF+WN++PS+R ++ VVPV CL+TP+KE +L Y PV+CS +CK+
Sbjct: 4 ETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKS 63
Query: 456 VLNP 467
+LNP
Sbjct: 64 ILNP 67
>gi|4176521|emb|CAA22877| (AL035263) protein transport protein sec23 homolog.
[Schizosaccharomyces pombe]
Length = 765
Score = 66.7 bits (160), Expect = 2e-10
Identities = 28/61 (45%), Positives = 43/61 (69%)
Query: 285 EDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVLCSRANCKAVLN 464
ED+DG+R SWN + ++ E+ R V+P++ ++TP+ E + QY+PV C RA C+AVLN
Sbjct: 7 EDQDGIRLSWNTFSATPAENARAVIPIAAMYTPLHENERMTIEQYDPVAC-RAPCRAVLN 65
Query: 465 P 467
P
Sbjct: 66 P 66
>gi|3935152 (AC005106) T25N20.16 [Arabidopsis thaliana]
Length = 811
Score = 63.6 bits (152), Expect = 2e-09
Identities = 26/61 (42%), Positives = 41/61 (66%)
Query: 285 EDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVLCSRANCKAVLN 464
E DGVR +WN+WP +++E+++ V+PV+ +PI+ D+P V+Y P+ C C A LN
Sbjct: 10 EGIDGVRMTWNVWPRTKVEASKCVIPVAACISPIRYHRDIPSVEYAPLRC--RICTAALN 67
Query: 465 P 467
P
Sbjct: 68 P 68
>gi|2244772|emb|CAB10195| (Z97335) transport protein [Arabidopsis thaliana]
Length = 769
Score = 54.7 bits (129), Expect = 9e-07
Identities = 23/60 (38%), Positives = 39/60 (64%)
Query: 285 EDRDGVRFSWNLWPSSRLESTRLVVPVSCLFTPIKERSDLPPVQYEPVLCSRANCKAVLN 464
E DGVR +WNLWP +++E+++ V+P++ +PI+ + + Y P+ C CKA+LN
Sbjct: 13 EGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPYAPLDCK--TCKALLN 70
>gi|4567227|gb|AAD23642|AC007119_8 (AC007119) putative transport protein [Arabidopsis thaliana]
Length = 761
Score = 45.3 bits (105), Expect = 6e-04
Identities = 26/61 (42%), Positives = 38/61 (61%), Gaps = 3/61 (4%)
Query: 285 EDRDGVRFSWNLWP--SSRLESTRLVVPVSCLFTPIKE-RSDLPPVQYEPVLCSRANCKA 455
E +DGVR WN+ P + + +S VPVS ++TP+K RS + Y P+ C C++
Sbjct: 8 EAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLKPLRSQSLLLPYSPLRC--RTCRS 65
Query: 456 VLNP 467
VLNP
Sbjct: 66 VLNP 69
>gi|632243|pir||JC2285 secretion protein Y - pea aphid symbiont bacterium
Length = 533
Score = 31.7 bits (70), Expect = 7.3
Identities = 17/40 (42%), Positives = 22/40 (54%)
Query: 816 VRLYASSLIMLCITYTLNNMFXMQHQNSNFILSPFVPVYF 697
V LYAS++I C YTL NM MQ +++P YF
Sbjct: 318 VLLYASAIIFFCFFYTLPNMPGMQ----GLVMNPGFAFYF 353
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Apr 17, 1999 5:33 AM
Number of letters in database: 113,023,754
Number of sequences in database: 369,800
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178599890
Number of Sequences: 369800
Number of extensions: 3858357
Number of successful extensions: 9594
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9582
Number of HSP's gapped (non-prelim): 11
length of query: 297
length of database: 113,023,754
effective HSP length: 54
effective length of query: 242
effective length of database: 93054554
effective search space: 22519202068
effective search space used: 22519202068
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)