BLASTX 2.0.8 [Jan-05-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11-22R
(327 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
369,800 sequences; 113,023,754 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|3122634|sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 153 5e-37
gi|2492523|sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A... 150 2e-36
gi|1174612|sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT ... 150 2e-36
gi|263098|bbs|121995 Tat binding protein 1, TBP-1=transcriptiona... 150 2e-36
gi|4506211|oth|NP_002795|PPSMC3 proteasome (prosome, macropain) ... 150 2e-36
gi|3510277|dbj|BAA32559| (D49686) Tat binding protein-1 [Mus mus... 150 2e-36
gi|3122633|sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 150 4e-36
gi|1710984 (U77918) spermatogenic cell/sperm-associated Tat-bind... 150 4e-36
gi|1174613|sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT ... 148 1e-35
gi|1729860|sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT ... 148 2e-35
gi|464859|sp|P33297|PRSA_YEAST 26S PROTEASE REGULATORY SUBUNIT 6... 148 2e-35
gi|3024434|sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT ... 148 2e-35
gi|3024431|sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT ... 146 3e-35
gi|3193161 (AF067618) contains similarity to the AAA family of A... 146 5e-35
gi|3024433|sp|O14126|PRSA_SCHPO PROBABLE 26S PROTEASE REGULATORY... 145 8e-35
gi|4574740|gb|AAD24194|AF134402_1 (AF134402) Tat-binding protein... 142 9e-34
gi|345717|pir||A44468 probable ATP-dependent proteinase (EC 3.4.... 131 2e-30
gi|1346811|sp|P49014|PRS4_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 131 2e-30
gi|4506207|oth|NP_002793|PPSMC1 proteasome (prosome, macropain) ... 131 2e-30
gi|1346810|sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT ... 130 3e-30
gi|2492516|sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT ... 130 3e-30
gi|3122624|sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY... 130 4e-30
gi|1172635|sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT ... 129 7e-30
gi|4580460|gb|AAD24384|AC006081_6 (AC006081) putative 26S Protea... 129 9e-30
gi|1170767|sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT ... 126 6e-29
gi|730904|sp|P40327|PRS4_YEAST 26S PROTEASE REGULATORY SUBUNIT 4... 125 7e-29
gi|3979998|emb|CAB11558| (Z98866) similar to ATPases associated ... 124 2e-28
gi|1709799|sp|P54814|PRS8_MANSE 26S PROTEASE REGULATORY SUBUNIT ... 124 2e-28
gi|3122626|sp|O18413|PRS8_DROME 26S PROTEASE REGULATORY SUBUNIT ... 124 2e-28
gi|2815905 (AF043734) Pros45 proteosome subunit homolog [Drosoph... 124 2e-28
gi|1825624 (U88170) strong similarity to 26S protease regulatory... 124 2e-28
gi|557599 (L17040) ATPase [Saccharomyces cerevisiae] 123 3e-28
gi|3790757 (AF099922) similar to the AAA family of ATPases; most... 123 4e-28
gi|228885|prf||1813279A SUG1 gene [Saccharomyces cerevisiae] 123 5e-28
gi|1709801|sp|Q01939|PRS8_YEAST 26S PROTEASE REGULATORY SUBUNIT ... 123 5e-28
gi|1195528|bbs|172814 26S protease subunit S8=SUG1 homolog [huma... 123 5e-28
gi|3450955 (AF020736) ATPase homolog [Homo sapiens] 122 6e-28
gi|1709797|sp|P54775|PRS6_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 122 6e-28
gi|1172637|sp|P43686|PRS6_HUMAN 26S PROTEASE REGULATORY SUBUNIT ... 122 6e-28
gi|2791680 (AF038965) 26S proteasome ATPase subunit [Homo sapien... 122 6e-28
gi|2492517|sp|Q63570|PRS6_RAT 26S PROTEASE REGULATORY SUBUNIT 6B... 122 6e-28
gi|263099|bbs|121996 Tat binding protein 7, TBP-7=transcriptiona... 122 6e-28
gi|464863|sp|P34124|PRS8_DICDI 26S PROTEASE REGULATORY SUBUNIT 8... 122 1e-27
gi|1172636|sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY... 121 1e-27
gi|2492521|sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT ... 121 1e-27
gi|1172638|sp|P46507|PRS6_MANSE 26S PROTEASE REGULATORY SUBUNIT ... 121 2e-27
gi|1262435|emb|CAA61864| (X89719) put. 26S protease subunit [Sus... 120 2e-27
gi|2564007|dbj|BAA22935| (AB000493) proteasome p45/SUG [Rattus n... 120 2e-27
gi|2661071 (AF035309) similar to 26S proteasome subunit p45 [Hom... 120 2e-27
gi|1346812|sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT ... 120 2e-27
gi|1709800|sp|P52915|PRS8_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 120 2e-27
gi|3122632|sp|O28303|PRS1_ARCFU PUTATIVE 26S PROTEASE REGULATORY... 120 4e-27
gi|464860|sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6... 120 4e-27
gi|1709798|sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT ... 118 1e-26
gi|1078797|pir||S51042 tat-binding protein homolog - Plasmodium ... 118 1e-26
gi|3024439|sp|P78578|PRS6_ASPNG 26S PROTEASE REGULATORY SUBUNIT ... 118 2e-26
gi|547935|sp|P36612|PRS4_SCHPO 26S PROTEASE REGULATORY SUBUNIT 4... 117 3e-26
gi|3041724|sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 116 6e-26
gi|807211|bbs|160278 Tat-binding protein alpha, DdTBP alpha=Tat-... 115 8e-26
gi|3687465|emb|CAA21189| (AL031798) 26s protease regulatory subu... 115 1e-25
gi|2492520|sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY... 115 1e-25
gi|4506209|oth|NP_002794|PPSMC2 proteasome (prosome, macropain) ... 115 1e-25
gi|1172640|sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT ... 115 1e-25
gi|3914449|sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT ... 115 1e-25
gi|2492519|sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT ... 115 1e-25
gi|4506213|oth|NP_002796|PPSMC5 proteasome (prosome, macropain) ... 115 1e-25
gi|543291|pir||S39349 MSS1 protein homolog - mouse 114 2e-25
gi|2492518|sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 ... 114 2e-25
gi|2506089|sp|P46471|PRS7_MOUSE 26S PROTEASE REGULATORY SUBUNIT ... 114 2e-25
gi|464861|sp|P33298|PRS6_YEAST 26S PROTEASE REGULATORY SUBUNIT 6... 113 4e-25
gi|2133217|pir||S69678 YTA2 protein - yeast (Saccharomyces cerev... 113 4e-25
gi|3122631|sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY... 112 9e-25
gi|464862|sp|P33299|PRS7_YEAST 26S PROTEASE REGULATORY SUBUNIT 7... 112 9e-25
gi|2492524|sp|Q58576|PRS1_METJA PUTATIVE 26S PROTEASE REGULATORY... 111 1e-24
gi|3256587|dbj|BAA29270| (AP000001) 399aa long hypothetical 26S ... 109 8e-24
gi|2853099|emb|CAA16915| (AL021767) 26s protease regulatory subu... 108 1e-23
gi|3122625|sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY... 106 5e-23
gi|2960216|emb|CAA11285| (AJ223384) 26S proteasome regulatory AT... 105 9e-23
gi|1709804|sp|P49719|PRSX_SPETR 26S PROTEASE REGULATORY SUBUNIT ... 103 4e-22
gi|4506215|oth|NP_002797|PPSMC6 proteasome (prosome, macropain) ... 103 4e-22
gi|3135751|emb|CAA06853| (AJ006095) 26S protease regulatory subu... 102 6e-22
gi|1147800 (U43720) Sug2p [Saccharomyces cerevisiae] 96 6e-20
gi|2506090|sp|P53549|SUG2_YEAST PROBABLE 26S PROTEASE SUBUNIT SU... 96 6e-20
gi|2982331 (AF051251) TAT-binding protein homolog [Picea mariana] 92 2e-18
gi|3603077|gb|AAC35738| (AF041468) hypothetical chloroplast RF25... 87 5e-17
gi|3122118|sp|P96942|FTSH_MYCTU CELL DIVISION PROTEIN FTSH HOMOL... 85 1e-16
gi|2465738 (AF022186) cell division protein [Cyanidium caldarium] 85 1e-16
gi|3097225|emb|CAA18796| (AL023093) cell division protein FtsH [... 85 2e-16
gi|1169754|sp|P46469|FTSH_LACLA CELL DIVISION PROTEIN FTSH HOMOL... 85 2e-16
gi|3426264 (AF037269) cell division protein [Mycobacterium smegm... 85 2e-16
gi|3808101|emb|CAA09935| (AJ012165) chloroplast protease [Capsic... 85 2e-16
gi|4325041|gb|AAD17230| (AF117339) FtsH-like protein Pftf precur... 85 2e-16
gi|3323067 (AE001247) cell division protein (ftsH) [Treponema pa... 84 3e-16
gi|3201633 (AC004669) putative cell division protein [Arabidopsi... 84 3e-16
gi|2492510|sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 84 3e-16
gi|3122116|sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOL... 84 3e-16
gi|2492511|sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 83 4e-16
gi|1706926|sp|P51327|FTSH_PORPU CELL DIVISION PROTEIN FTSH HOMOL... 83 6e-16
gi|3820564 (AF080002) ATP-dependent zinc metallopeptidase FtsH [... 83 6e-16
gi|1706925|sp|P49825|FTSH_ODOSI CELL DIVISION PROTEIN FTSH HOMOL... 83 8e-16
gi|3122117|sp|P94304|FTSH_BACFI CELL DIVISION PROTEIN FTSH HOMOL... 83 8e-16
gi|4154882 (AE001471) ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 83 8e-16
gi|2983448 (AE000714) cell division protein FtsH [Aquifex aeolicus] 82 1e-15
gi|2492508|sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOL... 82 1e-15
gi|120570|sp|P28691|FTSH_ECOLI CELL DIVISION PROTEIN FTSH >gi|42... 82 2e-15
gi|3128469 (AF061748) cell division protein FtsH [Streptococcus ... 82 2e-15
gi|746401 (U01376) ATP-binding protein [Escherichia coli] 82 2e-15
gi|585159|sp|P37476|FTSH_BACSU CELL DIVISION PROTEIN FTSH HOMOLO... 81 2e-15
gi|1168858|sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47... 80 4e-15
gi|2199518 (U97567) FtsH [Helicobacter pylori] 80 4e-15
gi|541748|emb|CAA54091| (X76643) Afg3p [Saccharomyces cerevisiae] 80 4e-15
gi|2062173 (AC001645) cell division protein FtsH isolog [Arabido... 80 4e-15
gi|2492513|sp|P72991|FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 80 5e-15
gi|3329313 (AE001357) ATP-dependent zinc protease [Chlamydia tra... 80 7e-15
gi|4377327|gb|AAD19135| (AE001680) ATP-dependent zinc protease [... 80 7e-15
gi|1589774 (U59452) HpFtsH [Helicobacter pylori] 80 7e-15
gi|3116137|emb|CAA18886| (AL023288) AAA family ATPase protein [S... 80 7e-15
gi|1881481|emb|CAB05953| (Z83338) FtsH [Mycobacterium tuberculosis] 79 9e-15
gi|3258278|dbj|BAA30961| (AP000007) 798aa long hypothetical tran... 79 9e-15
gi|730715|sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S4385... 79 1e-14
gi|2492509|sp|P75120|FTSH_MYCPN CELL DIVISION PROTEIN FTSH HOMOL... 79 1e-14
gi|508233 (U09358) Rca1p [Saccharomyces cerevisiae] 79 1e-14
gi|531754|emb|CAA56955| (X81068) probable mitochondrial protein ... 79 1e-14
gi|1710045|sp|P40341|RCA1_YEAST MITOCHONDRIAL RESPIRATORY CHAIN ... 79 1e-14
gi|1346047|sp|P47695|FTSH_MYCGE CELL DIVISION PROTEIN FTSH HOMOL... 79 1e-14
gi|4505483|oth|NP_002524|PNVL nuclear VCP-like >gi|2406580 (U787... 78 2e-14
gi|3721926|dbj|BAA33755| (AB017480) chloroplast FtsH protease [N... 78 2e-14
gi|2406565 (U68140) nuclear VCP-like protein NVLp.2 [Homo sapiens] 78 2e-14
gi|3878262|emb|CAB00040| (Z75712) similar to AAA ATPase; cDNA ES... 78 2e-14
gi|2492507|sp|P71377|FTH1_HAEIN CELL DIVISION PROTEIN FTSH HOMOL... 78 2e-14
gi|728820|sp|P39925|AFG3_YEAST AFG3 PROTEIN (TAT-BINDING HOMOLOG... 78 2e-14
gi|2492512|sp|P73437|FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOL... 78 2e-14
gi|2262118|gb|AAB63626| (AC002343) cell division protein isolog ... 78 2e-14
gi|3461848 (AC005315) putative ATPase [Arabidopsis thaliana] 78 3e-14
gi|2649281 (AE001014) cell division control protein 48, AAA fami... 78 3e-14
gi|2622767 (AE000923) cell division control protein Cdc48 [Metha... 77 3e-14
gi|3257095|dbj|BAA29778| (AP000003) 840aa long hypothetical cell... 77 3e-14
gi|2688712 (AE001177) cell division protein (ftsH) [Borrelia bur... 76 6e-14
gi|1916752 (U78072) VCP-like ATPase [Thermoplasma acidophilum] 76 6e-14
gi|4105619 (AF049099) SPAF [Mus musculus] 76 6e-14
gi|3218522|emb|CAA19646| (AL023874) 1-evidence=predicted by cont... 76 8e-14
gi|3860613|emb|CAA14514| (AJ235270) CELL DIVISION PROTEIN FTSH ... 76 8e-14
gi|1770214|emb|CAA67594| (X99207) smallminded [Drosophila melano... 75 1e-13
gi|2492514|sp|Q39102|FTSH_ARATH CELL DIVISION PROTEIN FTSH HOMOL... 75 1e-13
gi|1066063 (U39304) P26s4 [Cricetinae gen. sp.] 75 1e-13
gi|2077957|emb|CAA73318| (Y12780) ATPase [Arabidopsis thaliana] 75 2e-13
gi|2648442 (AE000959) cell division control protein 48, AAA fami... 75 2e-13
gi|2492504|sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 H... 74 3e-13
gi|2492515|sp|Q39444|FTSH_CAPAN CELL DIVISION PROTEIN FTSH HOMOL... 74 4e-13
gi|2492506|sp|Q13608|PEX6_HUMAN PEROXISOME ASSEMBLY FACTOR-2 (PA... 73 5e-13
gi|4505729|oth|NP_000278|PPEX6 peroxisomal biogenesis factor 6 >... 73 5e-13
gi|1709557|sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-... 73 5e-13
gi|2911135|dbj|BAA24931| (D89660) peroxisome assembly factor-2 [... 73 5e-13
gi|1705678|sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 H... 73 7e-13
gi|4507173|oth|NP_003110|PSPG7 spastic paraplegia 7, paraplegin ... 73 7e-13
gi|416590|sp|P32794|AFG2_YEAST AFG2 PROTEIN >gi|481664|pir||S391... 73 7e-13
gi|2467272|emb|CAB16902| (Z99759) hypothetical protein [Schizosa... 73 7e-13
gi|642339|emb|CAA58229| (X83226) peroxisome biogenesis invlved p... 72 1e-12
gi|3219842|sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|2370473|e... 72 1e-12
gi|464348|sp|P33760|PEX6_YEAST PEROXISOME BIOSYNTHESIS PROTEIN P... 72 1e-12
gi|3136033|emb|CAA19064| (AL023590) putative metallopeptidase [S... 72 1e-12
gi|4505725|oth|NP_000457|PPEX1 peroxisome biogenesis factor 1 >g... 71 3e-12
gi|3169060|emb|CAA19256| (AL023704) putative peroxisome biosynth... 71 3e-12
gi|1669371 (AC000064) ATPase; strong similarity to peroxisome bi... 71 3e-12
gi|2492505|sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 H... 71 3e-12
gi|3191980|emb|CAA19379| (AL023797) cell division protein FtsH h... 70 6e-12
gi|1168856|sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATP... 69 7e-12
gi|1174638|sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICUL... 69 1e-11
gi|3413700 (AC004747) putative YME1 protein [Arabidopsis thaliana] 69 1e-11
gi|1817701|emb|CAB06575| (Z84724) hypothetical protein Rv0435c [... 69 1e-11
gi|2492526|sp|Q07844|YL34_YEAST HYPOTHETICAL 93.1 KD PROTEIN YLL... 69 1e-11
gi|539079|pir||A48667 peroxisomal assembly protein 5 - yeast (Pi... 68 2e-11
gi|464347|sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN P... 68 2e-11
gi|1174636|sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM... 68 2e-11
gi|400712|sp|Q01853|TERA_MOUSE TRANSITIONAL ENDOPLASMIC RETICULU... 68 2e-11
gi|2144498|pir||VPPG transitional endoplasmic reticulum ATPase -... 68 2e-11
gi|1174637|sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM... 68 2e-11
gi|2984586 (AC004472) TERA_HUMAN [Homo sapiens] 68 2e-11
gi|548460|sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN P... 68 2e-11
gi|1705677|sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 H... 68 2e-11
gi|2853003|gb|AAC02215| (AF044488) valosin-containing protein ho... 67 4e-11
gi|1729898|sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICUL... 67 4e-11
gi|3874892|emb|CAA88105| (Z48045) similar to P97 protein; cDNA E... 67 4e-11
gi|3337433 (AF047037) transitional endoplasmic reticulum ATPase ... 66 6e-11
gi|1172019|sp|P46463|PEX1_PICPA PEROXISOME BIOSYNTHESIS PROTEIN ... 66 6e-11
gi|1705679|sp|P25694|CC48_YEAST CELL DIVISION CONTROL PROTEIN 48... 66 9e-11
gi|2291210 (AF016424) contains similarity to the AAA family of A... 66 9e-11
gi|2330848|emb|CAB11085| (Z98533) transitional endoplasmic retic... 66 1e-10
gi|4154795 (AE001464) ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 65 1e-10
gi|1730618|sp|P54813|YMEH_CAEEL YME1 PROTEIN HOMOLOG >gi|3878638... 65 1e-10
gi|2313382|gb|AAD07354| (AE000547) cell division protein (ftsH) ... 65 2e-10
gi|530428|emb|CAA83750| (Z33086) cell Division Protein FTSH (fam... 65 2e-10
gi|418575|sp|P32795|YME1_YEAST YME1 PROTEIN (TAT-BINDING HOMOLOG... 65 2e-10
gi|531752|emb|CAA56954| (X81067) probable mitochondrial protein;... 65 2e-10
gi|684978|dbj|BAA03839| (D16332) OSD1 gene product [Saccharomyce... 65 2e-10
gi|172098 (M58676) ATPase Pas1p [Saccharomyces cerevisiae] 64 3e-10
gi|548458|sp|P24004|PEX1_YEAST PEROXISOME BIOSYNTHESIS PROTEIN P... 64 3e-10
gi|4406773|gb|AAD20084| (AC006836) putative cell division contro... 64 3e-10
gi|1079323|pir||S52928 XSUG1 protein - African clawed frog 64 3e-10
gi|1729896|sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICUL... 64 4e-10
gi|1778842 (U83085) cell division cycle protein 48 [Dictyosteliu... 63 6e-10
gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory s... 63 7e-10
gi|3915816|sp|Q58889|PRS2_METJA PUTATIVE 26S PROTEASE REGULATORY... 63 7e-10
gi|4008355|emb|CAA92596| (Z68297) Similarity to Yeast TAT-bindin... 61 3e-09
gi|1729861|sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 61 3e-09
gi|3874249|emb|CAA94119| (Z70205) Similarity to Yeast peroxisome... 60 5e-09
gi|1272680|emb|CAA56963| (X81072) YTA7 [Saccharomyces cerevisiae] 59 8e-09
gi|1729862|sp|P40340|TBP7_YEAST TAT-BINDING HOMOLOG 7 >gi|213321... 59 8e-09
gi|1173445|sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 D... 59 1e-08
gi|3560170|emb|CAA20682| (AL031525) 26s protease regulatory subu... 59 1e-08
gi|3790601 (AF088800) ARC [Rhodococcus erythropolis] 59 1e-08
gi|1173444|sp|P46467|SKD1_MOUSE SKD1 PROTEIN >gi|1083520|pir||S4... 59 1e-08
gi|3329390 (AF038960) SKD1 homolog [Homo sapiens] 59 1e-08
gi|1168248|sp|P46509|A26A_MYCLE PUTATIVE ATPASE A2126A >gi|21458... 58 2e-08
gi|2253055|emb|CAB10706| (Z97559) hypothetical protein Rv2115c [... 58 2e-08
gi|3676746 (AF086832) ARC [Streptomyces coelicolor] 58 2e-08
gi|1176560|sp|P46508|YME1_SCHMA YME1 PROTEIN HOMOLOG >gi|542453|... 58 2e-08
gi|2291232 (AF016427) similar to the AAA family of ATPases [Caen... 57 4e-08
gi|2388970|emb|CAB11703| (Z98979) tat binding homolog [Schizosac... 57 6e-08
gi|3600100 (AF090430) ATP-dependent metalloprotease FtsH1 [Mus m... 57 6e-08
gi|1176230|sp|P42811|PRS2_METTM PUTATIVE 26S PROTEASE REGULATORY... 57 6e-08
gi|3334301|sp|O27092|PRS2_METTH PUTATIVE 26S PROTEASE REGULATORY... 57 6e-08
gi|4454688|gb|AAD20962| (AF070656) FtsH homolog [Homo sapiens] 57 6e-08
gi|2133218|pir||S61113 YTA6 protein - yeast (Saccharomyces cerev... 56 7e-08
gi|3128218 (AC004077) putative end13 protein [Arabidopsis thaliana] 56 7e-08
gi|730905|sp|P40328|TBP6_YEAST PROBABLE 26S PROTEASE SUBUNIT YTA... 56 7e-08
gi|1706647|sp|P52917|EN13_YEAST END13 PROTEIN >gi|2131247|pir||S... 56 7e-08
gi|1054845|emb|CAA63364| (X92680) allelic to VPS4 [Saccharomyces... 56 7e-08
gi|2257509|dbj|BAA21405| (AB004535) TAT-BINDING HOMOLOG 7. [Schi... 55 1e-07
gi|2649294 (AE001015) cell division control protein, AAA family,... 55 2e-07
gi|462591|sp|P34808|MEI1_CAEEL MEIOTIC SPINDLE FORMATION PROTEIN... 55 2e-07
gi|1078885|pir||S47861 mei-1 protein - Caenorhabditis elegans 55 2e-07
gi|3647351|emb|CAB10575| (Z97348) predicted using hexExon; MAL3P... 54 3e-07
gi|3283072 (AF056022) p60 katanin [Homo sapiens] 53 5e-07
gi|3098603 (AF052191) katanin p60 subunit [Strongylocentrotus pu... 53 6e-07
gi|3860272 (AC005824) putative suppressor protein [Arabidopsis t... 52 1e-06
gi|3257698|dbj|BAA30381| (AP000005) 363aa long hypothetical prot... 52 1e-06
gi|1449179|dbj|BAA13101| (D86506) N-ethylmaleimide sensitive fus... 52 1e-06
gi|731461|sp|P39955|SAP1_YEAST SAP1 PROTEIN >gi|1077655|pir||S50... 51 2e-06
gi|2894288|emb|CAA17029| (AL021837) putative proteome subunit [S... 51 2e-06
gi|467977 (U03985) N-ethylmaleimide-sensitive factor [Homo sapiens] 50 4e-06
gi|1171774|sp|P46460|NSF_MOUSE VESICULAR-FUSION PROTEIN NSF (N-E... 50 4e-06
gi|134267|sp|P18708|NSF_CRIGR VESICULAR-FUSION PROTEIN NSF (N-ET... 50 4e-06
gi|1171773|sp|P46459|NSF_HUMAN VESICULAR-FUSION PROTEIN NSF (N-E... 50 4e-06
gi|90219|pir||S04235 vesicular fusion protein NSF - Chinese hams... 50 4e-06
gi|1173370|sp|P34732|SC18_CANAL VESICULAR-FUSION PROTEIN SEC18 >... 49 9e-06
gi|487062|pir||S37606 SEC18 protein - yeast (Candida albicans) 49 9e-06
gi|4104671 (AF038010) N-ethylmaleimide-sensitive fusion protein ... 49 1e-05
gi|4325346|gb|AAD17345| (AF128393) similar to N-ethylmaleimide s... 49 1e-05
gi|3193292 (AF069298) similar to ATPases associated with various... 48 2e-05
gi|4115900 (AF015488) N-ethylmaleimide sensitive fusion protein ... 48 3e-05
gi|1171772|sp|P46461|NSF1_DROME VESICULAR-FUSION PROTEIN NSF1 (N... 47 4e-05
gi|2879845|emb|CAA76204| (Y16416) putative N-ethylmaleimide sens... 47 5e-05
gi|3878055|emb|CAB09531| (Z96100) Similarity to Drosophila vesic... 46 6e-05
gi|2492503|sp|Q94392|NSFH_CAEEL VESICULAR-FUSION PROTEIN NSF HOM... 46 6e-05
gi|1255387 (U53149) coded for by C. elegans cDNA yk74g12.5; code... 46 8e-05
gi|2650149 (AE001071) AAA superfamily ATPase [Archaeoglobus fulg... 46 8e-05
gi|4455359|emb|CAB36769| (AL035524) putative protein [Arabidopsi... 46 8e-05
gi|924933 (U28836) N-ethylmaleimide sensitive fusion protein-2 [... 46 1e-04
gi|1709351|sp|P54351|NSF2_DROME VESICULAR-FUSION PROTEIN NSF2 (N... 46 1e-04
gi|585965|sp|P18759|SC18_YEAST VESICULAR-FUSION PROTEIN SEC18 >g... 45 1e-04
gi|462627|sp|P28737|MSP1_YEAST MSP1 PROTEIN (TAT-BINDING HOMOLOG... 44 3e-04
gi|2584876 (AF006826) N-ethylmaleimide-sensitive fusion protein ... 44 4e-04
gi|4469019|emb|CAB38280| (AL035602) putative protein [Arabidopsi... 43 5e-04
gi|172563 (M20662) SEC18 gene product [Saccharomyces cerevisiae] 43 0.001
gi|3258279|dbj|BAA30962| (AP000007) 141aa long hypothetical prot... 43 0.001
gi|172564 (M20662) SEC18 gene product short form (5' end could b... 43 0.001
gi|2492527|sp|P55530|Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY ... 42 0.002
gi|3659891 (AF091834) N-ethylmaleimide sensitive factor NSF [Rat... 40 0.006
gi|3377851 (AF076274) contains similarity to ATPases associated ... 40 0.006
gi|1709135|sp|P54815|MSP1_CAEEL MSP1 PROTEIN HOMOLOG >gi|3878242... 39 0.008
gi|3877502|emb|CAA90252| (Z49967) ATP-binding protein (CDC48/PAS... 39 0.010
gi|758793 (U23723) orf300 [Escherichia coli] 38 0.018
gi|2506091|sp|P32839|BCS1_YEAST BCS1 PROTEIN >gi|2131192|pir||S6... 38 0.018
gi|2160153 (AC000375) Similar to Xenopus TER ATPase (gb|X54240).... 37 0.053
gi|687922|bbs|156028 PA700 subunit p56=ATP-dependent 20 S protea... 36 0.069
gi|3602963|gb|AAC35624| (AF041468) hypothetical chloroplast RF46... 36 0.091
gi|1749480|dbj|BAA13798| (D89136) similar to Saccharomyces cerev... 35 0.16
gi|2224422|dbj|BAA57906| (AB001684) cell division protein FtsH [... 34 0.35
gi|3023786|sp|P56369|FTSH_CHLVU CELL DIVISION PROTEIN FTSH HOMOL... 34 0.35
gi|2795916 (AF038195) unknown [Homo sapiens] >gi|3599962 (AF0268... 34 0.46
gi|258018|bbs|116340 (S47190) necessary for expression of ubiqui... 34 0.46
gi|624070 (U42580) contains ATP/GTP-binding site motif A; contai... 33 0.60
gi|3257096|dbj|BAA29779| (AP000003) 146aa long hypothetical prot... 33 0.60
gi|4539301|emb|CAB39604| (AL049480) putative mitochondrial prote... 32 1.4
gi|3877493|emb|CAA88471| (Z48583) similar to ATPases associated ... 32 1.4
gi|1169753|sp|P45219|FTH2_HAEIN CELL DIVISION PROTEIN FTSH HOMOL... 32 1.4
gi|3347992 (AF076598) RcaA [Dictyostelium discoideum] 31 2.3
gi|687933|bbs|156039 PA700 subunit p48=ATP-dependent 20 S protea... 31 3.0
gi|1351773|sp|P49541|YC46_ODOSI HYPOTHETICAL 56.9 KD PROTEIN YCF... 31 4.0
gi|2911393 (AF045927) cell division cycle protein 48 [Hordeum vu... 30 5.2
gi|1001469|dbj|BAA10095| (D63999) cell division cycle protein [S... 30 6.8
gi|3023975|sp|Q44772|HSLU_BORBU HEAT SHOCK PROTEIN HSLU >gi|1165... 30 6.8
gi|1196314 (L76303) heat shock response protein [Borrelia burgdo... 30 6.8
gi|2688171 (AE001137) heat shock protein (hslU) [Borrelia burgdo... 30 6.8
gi|79706|pir||JQ1233 hypothetical 41.8K protein - Synechocystis ... 30 6.8
gi|1001376|dbj|BAA10866| (D64006) ATP-dependent protease ATPase ... 29 9.0
gi|2351824 (U92039) ATP-dependent Clp protease, regulatory subun... 29 9.0
>gi|3122634|sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 6) (TBP-6)
>gi|2648047|emb|CAA71487| (Y10461) TBP6 protein [Xenopus
laevis]
Length = 405
Score = 153 bits (382), Expect = 5e-37
Identities = 79/109 (72%), Positives = 91/109 (83%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 232 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 291
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + M++++ +DILDPALLRSGR+DRKIEF
Sbjct: 292 RTMLELLNQLDGF--QPNMQVKVIAATNRVDILDPALLRSGRLDRKIEF 338
>gi|2492523|sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(SPERMATOGENIC CELL/SPERM-ASSOCIATED TAT-BINDING PROTEIN
HOMOLOG SATA) >gi|1395184|dbj|BAA11939| (D83522)
proteasomal ATPase (rat TBP1) [Rattus norvegicus]
Length = 439
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 308 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
>gi|1174612|sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(PROTEASOME SUBUNIT P50)
Length = 439
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 308 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
>gi|263098|bbs|121995 Tat binding protein 1, TBP-1=transcriptional activator [human,
Peptide, 439 aa]
Length = 439
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 308 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 354
>gi|4506211|oth|NP_002795|PPSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3
>gi|107855|pir||A34832 Tat-binding protein-1 - human
>gi|338700 (M34079) tat binding protein-1 (tbp-1) [Homo
sapiens]
Length = 404
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 213 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 272
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 273 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 319
>gi|3510277|dbj|BAA32559| (D49686) Tat binding protein-1 [Mus musculus]
Length = 442
Score = 150 bits (376), Expect = 2e-36
Identities = 78/109 (71%), Positives = 90/109 (82%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 251 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 310
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 311 RTMLELLNQLDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 357
>gi|3122633|sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 10)
(TBP-10) >gi|2648045|emb|CAA71486| (Y10460) TBP10
protein [Xenopus laevis]
Length = 404
Score = 150 bits (374), Expect = 4e-36
Identities = 77/109 (70%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIG KR DS++ GD EVQ
Sbjct: 213 FLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQ 272
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 273 RTMLELLNQLDGF--QPTTQVKVIAATNRVDILDPALLRSGRLDRKIEF 319
>gi|1710984 (U77918) spermatogenic cell/sperm-associated Tat-binding protein
homolog Sata [Rattus norvegicus]
Length = 442
Score = 150 bits (374), Expect = 4e-36
Identities = 77/109 (70%), Positives = 90/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE PSIIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 251 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 310
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQ+DG + ++++ +DILDPALLRSGR+DRKIEF
Sbjct: 311 RTMLELLNQMDGF--QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEF 357
>gi|1174613|sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|556560|dbj|BAA04614| (D17788)
rice homologue of Tat binding protein [Oryza sativa]
Length = 429
Score = 148 bits (370), Expect = 1e-35
Identities = 78/109 (71%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F+LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 238 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 297
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 298 RTMLELLNQLDGFSSD--ERIKVIAATNRADILDPALMRSGRLDRKIEF 344
>gi|1729860|sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
>gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato >gi|732815|emb|CAA52445| (X74426)
Mg-dependent ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 148 bits (369), Expect = 2e-35
Identities = 78/109 (71%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F+LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 232 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 291
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 292 RTMLELLNQLDGFSSD--DRIKVIAATNRADILDPALMRSGRLDRKIEF 338
>gi|464859|sp|P33297|PRSA_YEAST 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN HOMOLOG 1)
(TBP-1) >gi|626983|pir||S46605 YTA1 protein - yeast
(Saccharomyces cerevisiae) >gi|313878|emb|CAA51971|
(X73569) yeast tat-binding analog [Saccharomyces
cerevisiae] >gi|1050819|emb|CAA62114| (X90518) ORF O3258
[Saccharomyces cerevisiae] >gi|1164962|emb|CAA64037|
(X94335) YOR3258w [Saccharomyces cerevisiae]
>gi|1420311|emb|CAA99315| (Z75025) ORF YOR117w
[Saccharomyces cerevisiae]
Length = 434
Score = 148 bits (369), Expect = 2e-35
Identities = 76/109 (69%), Positives = 90/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLA PQLVQMYIG+GA+LVRD F LAKE P+IIFIDE+DAIGTKR DS+++GD EVQ
Sbjct: 243 FLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQ 302
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ +D+LDPALLRSGR+DRKIEF
Sbjct: 303 RTMLELLNQLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEF 349
>gi|3024434|sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2564337|dbj|BAA22951| (D88663)
Tat binding protein 1 [Brassica rapa]
Length = 424
Score = 148 bits (369), Expect = 2e-35
Identities = 78/109 (71%), Positives = 89/109 (81%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F+LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 233 FLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQ 292
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 293 RTMLELLNQLDGFSSD--ERIKVIAATNRADILDPALMRSGRLDRKIEF 339
>gi|3024431|sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2342675 (AC000106) Similar to
probable Mg-dependent ATPase (pir|S56671). ESTs
gb|T46782,gb|AA04798 come from this gene. [Arabidopsis
thaliana]
Length = 419
Score = 146 bits (366), Expect = 3e-35
Identities = 78/109 (71%), Positives = 88/109 (80%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE P IIFIDEIDAIGTKR DS+ +GD EVQ
Sbjct: 228 FLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQ 287
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ DILDPAL+RSGR+DRKIEF
Sbjct: 288 RTMLELLNQLDGFSSD--DRIKVIAATNRADILDPALMRSGRLDRKIEF 334
>gi|3193161 (AF067618) contains similarity to the AAA family of ATPases (Pfam;
AAA, score; 259.07); most similar to human probable 26S
protease subunit TBP-1 (SW:P17980) [Caenorhabditis
elegans]
Length = 430
Score = 146 bits (365), Expect = 5e-35
Identities = 77/108 (71%), Positives = 87/108 (80%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE P+IIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 239 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 298
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RTMLELLNQLDG +K+ ID+LDPALLRSGR+DRKIE
Sbjct: 299 RTMLELLNQLDGFQPNDDIKVI--AATNRIDVLDPALLRSGRLDRKIE 344
>gi|3024433|sp|O14126|PRSA_SCHPO PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6A
>gi|2414640|emb|CAB16387| (Z99260) 26s protease
regulatory subunit, yeast tbp1 homolog
[Schizosaccharomyces pombe]
Length = 438
Score = 145 bits (363), Expect = 8e-35
Identities = 75/109 (68%), Positives = 88/109 (79%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLA PQLVQM+IGDGA+LVRD F LAKE P+IIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 247 FLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG S ++++ +D LDPALLRSGR+DRK+EF
Sbjct: 307 RTMLELLNQLDGFSSD--DRVKVIAATNRVDTLDPALLRSGRLDRKLEF 353
>gi|4574740|gb|AAD24194|AF134402_1 (AF134402) Tat-binding protein-1 [Drosophila melanogaster]
Length = 431
Score = 142 bits (354), Expect = 9e-34
Identities = 77/109 (70%), Positives = 88/109 (80%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLKLAGPQLVQM+IGDGA+LVRD F LAKE P+IIFIDE+DAIGTKR DS++ GD EVQ
Sbjct: 241 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 300
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQL+G S +K+ +DIL PALLRSGR+DRKIEF
Sbjct: 301 RTMLELLNQLNGFSSTADIKVI--AATNRVDIL-PALLRSGRLDRKIEF 346
>gi|345717|pir||A44468 probable ATP-dependent proteinase (EC 3.4.21.-) chain 4 - human
Length = 440
Score = 131 bits (325), Expect = 2e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|1346811|sp|P49014|PRS4_MOUSE 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|1066067 (U39302)
P26s4 [Mus musculus] >gi|1395182|dbj|BAA09341| (D50696)
proteasomal ATPase (S4) [Rattus norvegicus]
Length = 440
Score = 131 bits (325), Expect = 2e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|4506207|oth|NP_002793|PPSMC1 proteasome (prosome, macropain) 26S subunit, ATPase, 1
>gi|1172634|sp|Q03527|PRS4_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 4 (P26S4) >gi|403456 (L02426) 26S protease (S4)
regulatory subunit [Homo sapiens]
Length = 440
Score = 131 bits (325), Expect = 2e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|1346810|sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|1066065 (U39303)
P26s4 [Drosophila melanogaster]
Length = 439
Score = 130 bits (324), Expect = 3e-30
Identities = 65/109 (59%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDA+GTKR DS+ G+ E+Q
Sbjct: 246 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQ 305
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 306 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 352
>gi|2492516|sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|1399943 (U60187) 26S
ATPase complex subunit 4 [Gallus gallus]
Length = 440
Score = 130 bits (324), Expect = 3e-30
Identities = 66/109 (60%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A+E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQ 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 307 RTMLELLNQLDGFDSRGDVKVIM--ATNRIETLDPALIRPGRIDRKIEF 353
>gi|3122624|sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4 >gi|2315358 (AF016440)
strong similarity to the AAA family of ATPases
[Caenorhabditis elegans]
Length = 443
Score = 130 bits (323), Expect = 4e-30
Identities = 64/109 (58%), Positives = 86/109 (78%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG ++VR++F++A+E PSI+FIDEIDA+GTKR DS+ G+ E+Q
Sbjct: 250 FLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQ 309
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ + I+ LDPAL+R GRIDRKIEF
Sbjct: 310 RTMLELLNQLDGFDSRGDVKVLM--ATNRIESLDPALIRPGRIDRKIEF 356
>gi|1172635|sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) >gi|556558|dbj|BAA04615| (D17789) rice
homologue of Tat binding protein [Oryza sativa]
Length = 448
Score = 129 bits (321), Expect = 7e-30
Identities = 66/109 (60%), Positives = 84/109 (76%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A E PSI+FIDEIDA+GTKR D+ G+ E+Q
Sbjct: 255 FLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 314
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ L I+ LDPALLR GRIDRKIEF
Sbjct: 315 RTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEF 361
>gi|4580460|gb|AAD24384|AC006081_6 (AC006081) putative 26S Protease Subunit 4 [Arabidopsis thaliana]
Length = 443
Score = 129 bits (320), Expect = 9e-30
Identities = 65/109 (59%), Positives = 85/109 (77%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG +LVR++F++A + PSI+FIDEIDA+GTKR D++ G+ E+Q
Sbjct: 250 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQ 309
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG SR +K+ L I+ LDPALLR GRIDRKIEF
Sbjct: 310 RTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEF 356
>gi|1170767|sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (LET1 PROTEIN)
>gi|626074|pir||S45176 transcription factor SUG1 homolog
- fission yeast (Schizosaccharomyces pombe) >gi|406051
(U02280) Let1 [Schizosaccharomyces pombe]
>gi|4106689|emb|CAA22628| (AL035065) 26s protease
regulatory subunit 8 homolog [Schizosaccharomyces pombe]
Length = 403
Score = 126 bits (313), Expect = 6e-29
Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSD-RTGDHEV 151
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ RSDS +GD EV
Sbjct: 207 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEV 266
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
QRTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 267 QRTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 314
>gi|730904|sp|P40327|PRS4_YEAST 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING HOMOLOG 5)
>gi|626989|pir||S46613 YTA5 protein - yeast
(Saccharomyces cerevisiae) >gi|531758|emb|CAA56957|
(X81070) probable regulatory subunit of 26S proteasome;
homologue to S4 subunit of human 26S proteasome
[Saccharomyces cerevisiae] >gi|683690|emb|CAA88352|
(Z48432) homolog to S4 subunit of human 26S proteasome
(X81070) [Saccharomyces cerevisiae]
>gi|1430967|emb|CAA98563| (Z74055) ORF YDL007w
[Saccharomyces cerevisiae]
Length = 437
Score = 125 bits (312), Expect = 7e-29
Identities = 65/109 (59%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG RL R +FK+A E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 244 FLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 303
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG R +K+ + I+ LDPAL+R GRIDRKI F
Sbjct: 304 RTMLELLNQLDGFDDRGDVKVIM--ATNKIETLDPALIRPGRIDRKILF 350
>gi|3979998|emb|CAB11558| (Z98866) similar to ATPases associated with various cellular
activities (AAA); cDNA EST yk411g8.5 comes from this
gene; cDNA EST yk361e3.5 comes from this gene; cDNA EST
EMBL:C13357 comes from this gene; cDNA EST EMBL:D74251
co...
Length = 416
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 221 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQ 280
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 281 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 327
>gi|1709799|sp|P54814|PRS8_MANSE 26S PROTEASE REGULATORY SUBUNIT 8 (18-56 PROTEIN) >gi|1167963
(U43728) 18-56 protein [Manduca sexta]
Length = 402
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 83/109 (75%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EVQ
Sbjct: 207 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 266
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 267 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 313
>gi|3122626|sp|O18413|PRS8_DROME 26S PROTEASE REGULATORY SUBUNIT 8 >gi|2245467 (U97538) DUG
[Drosophila melanogaster]
Length = 405
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 83/109 (75%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EVQ
Sbjct: 210 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 316
>gi|2815905 (AF043734) Pros45 proteosome subunit homolog [Drosophila
melanogaster]
Length = 405
Score = 124 bits (308), Expect = 2e-28
Identities = 63/109 (57%), Positives = 83/109 (75%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EVQ
Sbjct: 210 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 316
>gi|1825624 (U88170) strong similarity to 26S protease regulatory subnit 4
(P26S4) [Caenorhabditis elegans]
Length = 493
Score = 124 bits (308), Expect = 2e-28
Identities = 65/108 (60%), Positives = 80/108 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++ G LVQ G+GARLVR +F++AKE PSI+FIDEIDA+GTKR D+ G+ EVQ
Sbjct: 300 FIRATGSDLVQKQSGEGARLVRQIFQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQ 359
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+LELLNQLDG SR +K+ + ID LDPAL+R GRIDRKIE
Sbjct: 360 RTLLELLNQLDGFESRGDVKIIM--ATNRIDSLDPALIRPGRIDRKIE 405
>gi|557599 (L17040) ATPase [Saccharomyces cerevisiae]
Length = 437
Score = 123 bits (307), Expect = 3e-28
Identities = 64/109 (58%), Positives = 80/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG RL R +FK+A E PSI+FIDEIDAIGTKR DS+ G+ E+Q
Sbjct: 244 FLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQ 303
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG R +K+ + I+ LDPAL+R GRIDR I F
Sbjct: 304 RTMLELLNQLDGFDDRGDVKVIM--ATNKIETLDPALIRPGRIDRNILF 350
>gi|3790757 (AF099922) similar to the AAA family of ATPases; most similar to
26S protease regulatory subunit 8 [Caenorhabditis
elegans]
Length = 443
Score = 123 bits (306), Expect = 4e-28
Identities = 63/109 (57%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + R GD EVQ
Sbjct: 248 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQ 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 308 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 354
>gi|228885|prf||1813279A SUG1 gene [Saccharomyces cerevisiae]
Length = 400
Score = 123 bits (305), Expect = 5e-28
Identities = 62/109 (56%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ +DILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
>gi|1709801|sp|Q01939|PRS8_YEAST 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (SUG1 PROTEIN) (CIM3
PROTEIN) (TAT-BINDING PROTEIN TBY1)
>gi|2133183|pir||S64052 transcription factor SUG1 -
yeast (Saccharomyces cerevisiae) >gi|172878 (L01626)
Tat-binding protein [Saccharomyces cerevisiae]
>gi|1322539|emb|CAA96750| (Z72570) ORF YGL048c
[Saccharomyces cerevisiae]
Length = 405
Score = 123 bits (305), Expect = 5e-28
Identities = 62/109 (56%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ +DILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
>gi|1195528|bbs|172814 26S protease subunit S8=SUG1 homolog [human, erythrocytes, Peptide,
405 aa] >gi|4591|emb|CAA47023| (X66400) sug1
[Saccharomyces cerevisiae]
Length = 405
Score = 123 bits (305), Expect = 5e-28
Identities = 62/109 (56%), Positives = 82/109 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ +DILDPALLR GRIDRKIEF
Sbjct: 270 RTMLELLNQLDGF--ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
>gi|3450955 (AF020736) ATPase homolog [Homo sapiens]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|1709797|sp|P54775|PRS6_MOUSE 26S PROTEASE REGULATORY SUBUNIT 6B (CIP21) >gi|1196528 (L76223)
ATPase [Mus musculus]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|1172637|sp|P43686|PRS6_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6B (TAT-BINDING PROTEIN-7) (TBP-7)
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|2791680 (AF038965) 26S proteasome ATPase subunit [Homo sapiens]
>gi|4096275|gb|AAC99817.1| (U27515) MIP224 [Homo
sapiens]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|2492517|sp|Q63570|PRS6_RAT 26S PROTEASE REGULATORY SUBUNIT 6B (TAT-BINDING PROTEIN-7) (TBP-7)
>gi|1395186|dbj|BAA09340| (D50695) proteasomal ATPase
(Tat-binding protein7) [Rattus norvegicus]
Length = 418
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|263099|bbs|121996 Tat binding protein 7, TBP-7=transcriptional activator [human,
Peptide, 458 aa]
Length = 458
Score = 122 bits (304), Expect = 6e-28
Identities = 62/109 (56%), Positives = 79/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 227 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQ 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 287 RILLELLNQMDGFDQNVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 333
>gi|464863|sp|P34124|PRS8_DICDI 26S PROTEASE REGULATORY SUBUNIT 8 (TAT-BINDING PROTEIN HOMOLOG 10)
>gi|422297|pir||JN0610 probable transcription factor
DdTBP10 - slime mold (Dictyostelium discoideum)
(fragment) >gi|290057 (L16579) HIV1 TAT-binding protein
[Dictyostelium discoideum]
Length = 389
Score = 122 bits (302), Expect = 1e-27
Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDS-DRTGDHEV 151
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG+ R +S GD EV
Sbjct: 193 FIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEV 252
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
QRTMLELLNQLDG S +K+ + IDILDPALLR GRIDRKIEF
Sbjct: 253 QRTMLELLNQLDGFESTKNIKVLM--CTNRIDILDPALLRPGRIDRKIEF 300
>gi|1172636|sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B >gi|529215 (U12965)
similar to CDC48/PAS1/SEC18 family; highest similarity
to 26S protease subunit 4, member of eukaryotic ATPase
family [Caenorhabditis elegans]
Length = 414
Score = 121 bits (301), Expect = 1e-27
Identities = 63/109 (57%), Positives = 78/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE PSIIFIDEIDAI TKR D+ D EVQ
Sbjct: 223 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQ 282
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 283 RILLELLNQMDGFDQSTNVKVIM--ATNRQDTLDPALLRPGRLDRKIEF 329
>gi|2492521|sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG) >gi|1353667 (U41812) Tat-binding protein
homolog [Naegleria fowleri]
Length = 414
Score = 121 bits (301), Expect = 1e-27
Identities = 63/109 (57%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEV 151
F++++G +LVQ YIG+G+++VR++F +A+E PSIIF+DEID+IG+ R++ + GD EV
Sbjct: 218 FIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEV 277
Query: 150 QRTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
QRTMLELLNQLDG S +++ IDILDPALLR GRIDRKIEF
Sbjct: 278 QRTMLELLNQLDGFES--TQNIKIIMATNRIDILDPALLRPGRIDRKIEF 325
>gi|1172638|sp|P46507|PRS6_MANSE 26S PROTEASE REGULATORY SUBUNIT 6B (ATPASE MS73)
>gi|559486|emb|CAA86294| (Z38135) DEAD-box ATPase
[Manduca sexta]
Length = 415
Score = 121 bits (300), Expect = 2e-27
Identities = 62/109 (56%), Positives = 78/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 224 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQ 283
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 284 RILLELLNQMDGFDQTTNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 330
>gi|1262435|emb|CAA61864| (X89719) put. 26S protease subunit [Sus scrofa]
Length = 398
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 203 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 262
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 263 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 309
>gi|2564007|dbj|BAA22935| (AB000493) proteasome p45/SUG [Rattus norvegicus]
Length = 374
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 179 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 238
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 239 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 285
>gi|2661071 (AF035309) similar to 26S proteasome subunit p45 [Homo sapiens]
Length = 280
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 85 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 144
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 145 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 191
>gi|1346812|sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASOME SUBUNIT P45) (THYROID
HORMONE RECEPTOR INTERACTING PROTEIN 1) (TRIP1)
>gi|2136007|pir||I53510 proteasome subunit p45 - human
>gi|976227|dbj|BAA07919| (D44467) 26S proteasome subunit
p45 [Homo sapiens] >gi|1096205|prf||2111282A 26S
proteasome [Homo sapiens]
Length = 406
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 270
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 271 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317
>gi|1709800|sp|P52915|PRS8_MOUSE 26S PROTEASE REGULATORY SUBUNIT 8 (MSUG1 PROTEIN) (TAT-BINDING
PROTEIN HOMOLOG 10) (TBP10) (P45/SUG)
>gi|2137798|pir||S61923 SUG1 protein - mouse
>gi|1165125|emb|CAA90961.1| (Z54219) mSUG1 protein [Mus
musculus] >gi|1262433|emb|CAA61863| (X89718) 26S
protease subunit [Sus scrofa] >gi|1395177|dbj|BAA11938|
(D83521) proteasomal ATPase (rat SUG1) [Rattus
norvegicus] >gi|2564003|dbj|BAA22933| (AB000491)
proteasome p45/SUG [Rattus norvegicus] >gi|3193258
(AF069053) proteasome subunit SUG1 [Bos taurus]
Length = 406
Score = 120 bits (299), Expect = 2e-27
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 270
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 271 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 317
>gi|3122632|sp|O28303|PRS1_ARCFU PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG AF1976 >gi|2648566
(AE000967) 26S protease regulatory subunit 4
[Archaeoglobus fulgidus]
Length = 398
Score = 120 bits (297), Expect = 4e-27
Identities = 63/108 (58%), Positives = 81/108 (74%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ YIG+GARLVR+VF+LAKE PSIIFIDE+DAI +R++SD +GD EVQ
Sbjct: 203 FIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQ 262
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RTM++LL +LDG R +K+ IDILDPA+LR GR DR IE
Sbjct: 263 RTMMQLLAELDGFDPRGDVKVI--GATNRIDILDPAILRPGRFDRIIE 308
>gi|464860|sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) >gi|422298|pir||JN0611 probable transcription
factor DdTBP2 - slime mold (Dictyostelium discoideum)
>gi|290055 (L16578) HIV1 TAT-binding protein
[Dictyostelium discoideum]
Length = 403
Score = 120 bits (297), Expect = 4e-27
Identities = 60/109 (55%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G RLVRDVF+LA+E P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 212 FIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQ 271
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELLNQ+DG + + +++ D LDPALLR GR+DRKIEF
Sbjct: 272 RILMELLNQMDGF--DVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEF 318
>gi|1709798|sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG >gi|1155334 (U43398)
POTATP1 [Solanum tuberosum]
Length = 413
Score = 118 bits (294), Expect = 1e-26
Identities = 59/109 (54%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF+LAKE P+IIFIDE+DAI T R D+ D EVQ
Sbjct: 222 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQ 281
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELLNQ+DG + +K+ + D LDPALLR GR+DRKIEF
Sbjct: 282 RILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 328
>gi|1078797|pir||S51042 tat-binding protein homolog - Plasmodium falciparum
Length = 435
Score = 118 bits (293), Expect = 1e-26
Identities = 62/109 (56%), Positives = 84/109 (76%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ YIG+G+R+VR++F +A+E PSIIF+DEID+IG++R + + GD EVQ
Sbjct: 241 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEH-GDSEVQ 299
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTM+ELLNQLDG S +++ IDILD ALLR GRIDRKIEF
Sbjct: 300 RTMMELLNQLDGFES--TQNIKVIMCTNRIDILDEALLRPGRIDRKIEF 346
>gi|3024439|sp|P78578|PRS6_ASPNG 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG >gi|1777414 (U15601) 26S
proteasome subunit [Aspergillus niger]
Length = 423
Score = 118 bits (292), Expect = 2e-26
Identities = 60/109 (55%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF++A+E P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 228 FIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQ 287
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R +LELLNQ+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 288 RILLELLNQMDGFEQSSNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 334
>gi|547935|sp|P36612|PRS4_SCHPO 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (MTS2 PROTEIN)
>gi|481780|pir||S39348 26S ATP/ubiquitin-dependent
proteinase chain S4 - fission yeast (Schizosaccharomyces
pombe) >gi|442508|emb|CAA82554| (Z29366) mts2 gene
[Schizosaccharomyces pombe] >gi|738776|prf||2001429A
ubiquitin-dependent protease [Schizosaccharomyces pombe]
Length = 448
Score = 117 bits (290), Expect = 3e-26
Identities = 61/109 (55%), Positives = 76/109 (68%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FL++ G +L+Q Y+GDG RLVR +F A+E PSI+FIDEIDAIGTKR D+ + E+Q
Sbjct: 253 FLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQ 312
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ I LDPAL+R GRIDRKI F
Sbjct: 313 RTMLELLNQLDGF-DTSQRDIKVIMATNRISDLDPALIRPGRIDRKILF 360
>gi|3041724|sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOMOLOG) (XSUG1)
>gi|1877414|emb|CAA57512| (X81986) XSUG1 [Xenopus
laevis]
Length = 461
Score = 116 bits (287), Expect = 6e-26
Identities = 62/109 (56%), Positives = 81/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + GD EVQ
Sbjct: 206 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQ 264
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +++ IDILD ALLR GRIDRKIEF
Sbjct: 265 RTMLELLNQLDGF--EATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 311
>gi|807211|bbs|160278 Tat-binding protein alpha, DdTBP alpha=Tat-binding protein 1
homolog/26S protease subunit homolog [Dictyostelium
discoideum, Peptide, 439 aa]
Length = 439
Score = 115 bits (286), Expect = 8e-26
Identities = 59/109 (54%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++ G + +Q Y+GDG RLVR+++++A E PSI+FIDEID++ TKR DS G+ E+Q
Sbjct: 246 FKRVVGSEKIQKYLGDGPRLVRELYRVADECAPSIVFIDEIDSVFTKRYDSQSGGEREIQ 305
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLELLNQLDG +R K + I+ LDPA +R GRIDRKIEF
Sbjct: 306 RTMLELLNQLDGFDARTDCKCIM--ATNRIETLDPARIRPGRIDRKIEF 352
>gi|3687465|emb|CAA21189| (AL031798) 26s protease regulatory subunit 6b homolog
[Schizosaccharomyces pombe]
Length = 389
Score = 115 bits (285), Expect = 1e-25
Identities = 58/109 (53%), Positives = 77/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + VQ Y+G+G R+VRDVF++A+E P+IIFIDEIDAI TKR D+ D EVQ
Sbjct: 196 FIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQ 255
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELL Q+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 256 RILIELLTQMDGFDQGANVKVIM--ATNRADTLDPALLRPGRLDRKIEF 302
>gi|2492520|sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 7
>gi|3875191|emb|CAB01414| (Z78012) Similarity to Human
26S protease regulatory subunit 7 (SW:PRS7_HUMAN); cDNA
EST yk314h3.5 comes from this gene; cDNA EST yk339d4.3
comes from this gene; cDNA EST yk339d4.5 comes from this
gene; cDNA EST yk505e8.3 comes...
Length = 435
Score = 115 bits (285), Expect = 1e-25
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDA+G R D + GD+EVQ
Sbjct: 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQ 298
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRK+EF
Sbjct: 299 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKVEF 345
>gi|4506209|oth|NP_002794|PPSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2
>gi|547930|sp|P35998|PRS7_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 7 (MSS1 PROTEIN) >gi|107102|pir||S24353 MSS1
protein - human >gi|219931|dbj|BAA01868| (D11094) MSS1
protein [Homo sapiens] >gi|228886|prf||1813280A
tat-mediated transactivation modulator [Homo sapiens]
Length = 433
Score = 115 bits (285), Expect = 1e-25
Identities = 59/109 (54%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|1172640|sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1079305|pir||S53709 MSS1 protein homolog - African
clawed frog >gi|695772|emb|CAA56438| (X80157) xMSS1
[Xenopus laevis] >gi|1095500|prf||2109230A MSS1-like
protein [Xenopus laevis]
Length = 433
Score = 115 bits (285), Expect = 1e-25
Identities = 59/109 (54%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|3914449|sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|3172331 (AF041258) 26S proteasome subunit 7 [Prunus
persica]
Length = 425
Score = 115 bits (284), Expect = 1e-25
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K I+F DE+DAIG R D GD+EVQ
Sbjct: 229 FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 288
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLE++NQLDG +R +K+ + D LDPALLR GR+DRK+EF
Sbjct: 289 RTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEF 335
>gi|2492519|sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|1395191|dbj|BAA13021| (D86121) 26S proteasome ATPase
subunit [Spinacia oleracea]
Length = 426
Score = 115 bits (284), Expect = 1e-25
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K I+F DE+DAIG R D GD+EVQ
Sbjct: 230 FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLE++NQLDG +R +K+ + D LDPALLR GR+DRK+EF
Sbjct: 290 RTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEF 336
>gi|4506213|oth|NP_002796|PPSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5
>gi|2136322|pir||S60343 Trip1 protein - human >gi|695370
(L38810) thyroid receptor interactor [Homo sapiens]
>gi|1094810|prf||2106382A thyroid hormone
receptor-interacting protein [Homo sapiens]
Length = 406
Score = 115 bits (284), Expect = 1e-25
Identities = 59/109 (54%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F++++G +LVQ +IG+GAR+VR++F +A+E PSIIF+DEID+IG+ R + G EVQ
Sbjct: 211 FIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGSSEVQ 270
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R MLELLNQLDG +++ ID+LD ALLR GRIDRKIEF
Sbjct: 271 RQMLELLNQLDGF--EATKNIKVIMATNRIDMLDSALLRPGRIDRKIEF 317
>gi|543291|pir||S39349 MSS1 protein homolog - mouse
Length = 433
Score = 114 bits (282), Expect = 2e-25
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DE+DAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEMDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|2492518|sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1395179|dbj|BAA09339| (D50694) proteasomal ATPase
(MSS1) [Rattus norvegicus]
Length = 433
Score = 114 bits (282), Expect = 2e-25
Identities = 59/109 (54%), Positives = 78/109 (71%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + G +LVQ Y+G+GAR+VR++F++A+ K +IF DEIDAIG R D GD+EVQ
Sbjct: 237 FIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|2506089|sp|P46471|PRS7_MOUSE 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
Length = 433
Score = 114 bits (282), Expect = 2e-25
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K +IF DE+DAIG R D GD+EVQ
Sbjct: 237 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEMDAIGGARFDDGAGGDNEVQ 296
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+NQLDG R +K+ + D LDPAL+R GR+DRKIEF
Sbjct: 297 RTMLELINQLDGFDPRGNIKVLM--ATNRPDTLDPALMRPGRLDRKIEF 343
>gi|464861|sp|P33298|PRS6_YEAST 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (YNT1 PROTEIN)
(TAT-BINDING HOMOLOG 2) >gi|313880|emb|CAA51972|
(X73570) 26S proteasome subunit Rpt3 [Saccharomyces
cerevisiae] >gi|458389 (U06229) Ynt1p [Saccharomyces
cerevisiae]
Length = 428
Score = 113 bits (280), Expect = 4e-25
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + V Y+G+G R+VRDVF+LA+E PSIIFIDE+D+I TKR D+ D EVQ
Sbjct: 234 FIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELL Q+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 294 RILIELLTQMDGFDQSTNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 340
>gi|2133217|pir||S69678 YTA2 protein - yeast (Saccharomyces cerevisiae) >gi|927327 (U32274)
Yta2p; CAI: 0.21 [Saccharomyces cerevisiae]
Length = 428
Score = 113 bits (280), Expect = 4e-25
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G + V Y+G+G R+VRDVF+LA+E PSIIFIDE+D+I TKR D+ D EVQ
Sbjct: 234 FIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
R ++ELL Q+DG +K+ + D LDPALLR GR+DRKIEF
Sbjct: 294 RILIELLTQMDGFDQSTNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 340
>gi|3122631|sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH728 >gi|2621817
(AE000852) ATP-dependent 26S protease regulatory subunit
4 [Methanobacterium thermoautotrophicum]
Length = 410
Score = 112 bits (277), Expect = 9e-25
Identities = 61/108 (56%), Positives = 75/108 (68%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+K+ + V+ YIG+GARLVR VF+LAKE PSIIFIDEIDA+ KR S +GD EVQ
Sbjct: 213 FIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQ 272
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+++LL +LDG SR + + DILDPALLR GR DR IE
Sbjct: 273 RTLMQLLAELDGFESR--GNVGIVAATNRPDILDPALLRPGRFDRFIE 318
>gi|464862|sp|P33299|PRS7_YEAST 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG (CIM5 PROTEIN)
(TAT-BINDING HOMOLOG 3) >gi|422126|pir||S34354
tat-binding protein homolog YTA3 - yeast (Saccharomyces
cerevisiae) >gi|313882|emb|CAA51973| (X73571) 26S
proteasome subunit Rpt1 [Saccharomyces cerevisiae]
>gi|410510|emb|CAA80470| (Z22817) putative ATPase
[Saccharomyces cerevisiae] >gi|486249|emb|CAA81986|
(Z28145) ORF YKL145w [Saccharomyces cerevisiae]
>gi|738777|prf||2001430A 26S protease [Saccharomyces
cerevisiae]
Length = 467
Score = 112 bits (277), Expect = 9e-25
Identities = 58/109 (53%), Positives = 77/109 (70%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K IIF DEIDA+G R D GD+EVQ
Sbjct: 271 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQ 330
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+ QLDG R +K+ + LDPALLR GRIDRK+EF
Sbjct: 331 RTMLELITQLDGFDPRGNIKVMF--ATNRPNTLDPALLRPGRIDRKVEF 377
>gi|2492524|sp|Q58576|PRS1_METJA PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MJ1176
>gi|2127779|pir||G64446 ATP-dependent 26S proteosome
regulatory subunit 4 homolog - Methanococcus jannaschii
>gi|1591803 (U67559) proteasome regulatory AAA-ATPase
[Methanococcus jannaschii]
Length = 430
Score = 111 bits (276), Expect = 1e-24
Identities = 59/108 (54%), Positives = 79/108 (72%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LV+ +IG+GA LV+D+FKLAKE PSIIFIDEIDAI KR+D+ GD EVQ
Sbjct: 232 FIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQ 291
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+++LL ++DG +R +K+ DILDPA+LR GR DR IE
Sbjct: 292 RTLMQLLAEMDGFDARGDVKII--GATNRPDILDPAILRPGRFDRIIE 337
>gi|3256587|dbj|BAA29270| (AP000001) 399aa long hypothetical 26S protease regulatory subunit
[Pyrococcus horikoshii]
Length = 399
Score = 109 bits (269), Expect = 8e-24
Identities = 57/108 (52%), Positives = 76/108 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LV+ YIG+GARLV ++F+LAKE P+IIFIDEIDAIG KR D G+ EV
Sbjct: 202 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 261
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT+++LL ++DG R +++ DILDPALLR GR DR IE
Sbjct: 262 RTLMQLLAEMDGFDPR--GNVKVIAATNRPDILDPALLRPGRFDRLIE 307
>gi|2853099|emb|CAA16915| (AL021767) 26s protease regulatory subunit 7 [Schizosaccharomyces
pombe]
Length = 440
Score = 108 bits (267), Expect = 1e-23
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+++ G +LVQ Y+G+GAR+VR++F++A+ K IIF DEIDAIG R D GD+EVQ
Sbjct: 243 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ 302
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
RTMLEL+ QLDG R +K+ + LD AL+R GRIDRK+EF
Sbjct: 303 RTMLELITQLDGFDPRGNIKVLF--ATNRPNTLDEALMRPGRIDRKVEF 349
>gi|3122625|sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT S10B >gi|2394434
(AF024493) strong similarity to the AAA family of
ATPases [Caenorhabditis elegans]
Length = 398
Score = 106 bits (262), Expect = 5e-23
Identities = 53/108 (49%), Positives = 75/108 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ AR++R++F A++ +P I+F+DEIDAIG +R + D E+Q
Sbjct: 204 FLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQ 263
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT++ELLNQLDG S + K+++ D LDPALLR GR+DRKIE
Sbjct: 264 RTLMELLNQLDGFDS--LGKVKVIMATNRPDTLDPALLRPGRLDRKIE 309
>gi|2960216|emb|CAA11285| (AJ223384) 26S proteasome regulatory ATPase subunit 10b (S10b)
[Manduca sexta]
Length = 396
Score = 105 bits (260), Expect = 9e-23
Identities = 53/108 (49%), Positives = 75/108 (69%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ ARL+R++F A++ +P IIF+DEIDAIG +R + D E+Q
Sbjct: 202 FLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 261
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
RT++ELLNQ+DG S + ++++ D LDPALLR GR+DRKIE
Sbjct: 262 RTLMELLNQMDGFDS--LGQVKIIMATNRPDTLDPALLRPGRLDRKIE 307
>gi|1709804|sp|P49719|PRSX_SPETR 26S PROTEASE REGULATORY SUBUNIT S10B (P44) (CONSERVED ATPASE DOMAIN
PROTEIN 44) >gi|1045497 (U36395) conserved ATPase domain
protein 44 [Spermophilus tridecemlineatus] >gi|2213932
(AF006305) 26S proteasome regulatory subunit [Homo
sapiens]
Length = 389
Score = 103 bits (255), Expect = 4e-22
Identities = 51/107 (47%), Positives = 73/107 (67%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ ARL+R++F A++ +P IIF+DEIDAIG +R + D E+Q
Sbjct: 195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 254
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
RT++ELLNQ+DG + ++++ D LDPALLR GR+DRKI
Sbjct: 255 RTLMELLNQMDGF--DTLHRVKMIMATNRPDTLDPALLRPGRLDRKI 299
>gi|4506215|oth|NP_002797|PPSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6
>gi|2492522|sp|Q92524|PRSX_HUMAN 26S PROTEASE REGULATORY
SUBUNIT S10B (PROTEASOME SUBUNIT P42)
>gi|1526426|dbj|BAA11338| (D78275) proteasome subunit
p42 [Homo sapiens]
Length = 389
Score = 103 bits (255), Expect = 4e-22
Identities = 51/107 (47%), Positives = 73/107 (67%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
FLK+ +V YIG+ ARL+R++F A++ +P IIF+DEIDAIG +R + D E+Q
Sbjct: 195 FLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 254
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
RT++ELLNQ+DG + ++++ D LDPALLR GR+DRKI
Sbjct: 255 RTLMELLNQMDGF--DTLHRVKMTMATNRPDTLDPALLRPGRLDRKI 299
>gi|3135751|emb|CAA06853| (AJ006095) 26S protease regulatory subunit 6 [Cicer arietinum]
Length = 177
Score = 102 bits (253), Expect = 6e-22
Identities = 53/94 (56%), Positives = 67/94 (70%)
Query: 282 DGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLNQLDGV*S 103
+G R+VRDVF+LAKE P+IIFIDE+DAI T R D+ D EVQR ++ELLNQ+DG
Sbjct: 1 EGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ 60
Query: 102 RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIEF 1
+ +K+ + D LDPALLR GR+DRKIEF
Sbjct: 61 TVNVKVIM--ATNRADTLDPALLRPGRLDRKIEF 92
>gi|1147800 (U43720) Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 96.3 bits (236), Expect = 6e-20
Identities = 47/100 (47%), Positives = 69/100 (69%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
+V YIG+ AR++R++F AKE +P IIF+DE+DAIG +R + D E+QRT++ELL
Sbjct: 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310
Query: 123 QLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
Q+DG + + + ++ D LDPALLR GR+DRK+E
Sbjct: 311 QMDGFDN--LGQTKIIMATNRPDTLDPALLRPGRLDRKVE 348
>gi|2506090|sp|P53549|SUG2_YEAST PROBABLE 26S PROTEASE SUBUNIT SUG2 (PROTEASOME CAP SUBUNIT)
>gi|2133163|pir||S67156 SUG2 protein - yeast
(Saccharomyces cerevisiae) >gi|1420585|emb|CAA99481|
(Z75167) ORF YOR259c [Saccharomyces cerevisiae]
>gi|1931623 (U93262) proteasome cap subunit
[Saccharomyces cerevisiae]
Length = 437
Score = 96.3 bits (236), Expect = 6e-20
Identities = 47/100 (47%), Positives = 69/100 (69%)
Query: 303 LVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQRTMLELLN 124
+V YIG+ AR++R++F AKE +P IIF+DE+DAIG +R + D E+QRT++ELL
Sbjct: 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310
Query: 123 QLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
Q+DG + + + ++ D LDPALLR GR+DRK+E
Sbjct: 311 QMDGFDN--LGQTKIIMATNRPDTLDPALLRPGRLDRKVE 348
>gi|2982331 (AF051251) TAT-binding protein homolog [Picea mariana]
Length = 175
Score = 91.7 bits (224), Expect = 2e-18
Identities = 52/87 (59%), Positives = 63/87 (71%), Gaps = 1/87 (1%)
Query: 261 DVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEVQRTMLELLNQLDGV*SRIIMKL 85
++F +A+E PSIIF+DEID+IG+ R +S GD EVQRTMLELLNQLDG K+
Sbjct: 1 ELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGF--EASNKI 58
Query: 84 RL*RQPTXIDILDPALLRSGRIDRKIEF 1
++ IDILD ALLR GRIDRKIEF
Sbjct: 59 KVLMATNRIDILDQALLRPGRIDRKIEF 86
>gi|3603077|gb|AAC35738| (AF041468) hypothetical chloroplast RF25 [Guillardia theta]
Length = 631
Score = 86.6 bits (211), Expect = 5e-17
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+FIDEIDA+G +R G+ E +
Sbjct: 234 FFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGNDERE 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + +D+LD ALLR GR DR++
Sbjct: 294 QTLNQLLTEMDGFEGN--TGIIIIAATNRVDVLDAALLRPGRFDRQV 338
>gi|3122118|sp|P96942|FTSH_MYCTU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2113966|emb|CAB08956|
(Z95557) ftsH [Mycobacterium tuberculosis]
Length = 760
Score = 85.4 bits (208), Expect = 1e-16
Identities = 47/107 (43%), Positives = 69/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIF+DEIDA+G +R G E +
Sbjct: 224 FFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDERE 283
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG R ++ + +P DILDPALLR GR DR+I
Sbjct: 284 QTLNQLLVEMDGFGDRAGVILIAATNRP---DILDPALLRPGRFDRQI 328
>gi|2465738 (AF022186) cell division protein [Cyanidium caldarium]
Length = 614
Score = 85.4 bits (208), Expect = 1e-16
Identities = 48/107 (44%), Positives = 70/107 (64%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+FIDEIDA+G +R G+ E +
Sbjct: 232 FFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDERE 291
Query: 147 RTMLELLNQLDGV--*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + +I+ R ID+LD ALLR GR DR+I
Sbjct: 292 QTLNQLLTEMDGFSGDTGVIVVAATNR----IDVLDSALLRPGRFDRQI 336
>gi|3097225|emb|CAA18796| (AL023093) cell division protein FtsH [Mycobacterium leprae]
Length = 787
Score = 85.0 bits (207), Expect = 2e-16
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F AK+ P IIF+DEIDA+G +R G E +
Sbjct: 224 FFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDAVGRQRGTGLGGGHDERE 283
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG R ++ + +P DILDPALLR GR DR+I
Sbjct: 284 QTLNQLLVEMDGFGDRAGVILIAATNRP---DILDPALLRPGRFDRQI 328
>gi|1169754|sp|P46469|FTSH_LACLA CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2126621|pir||S28533 tma
protein - Lactococcus lactis >gi|44027|emb|CAA48877|
(X69123) Tma protein [Lactococcus lactis]
Length = 695
Score = 84.7 bits (206), Expect = 2e-16
Identities = 48/107 (44%), Positives = 70/107 (64%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ PSIIFIDEIDA+G +R G+ E +
Sbjct: 254 FYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSIIFIDEIDAVGRQRGAGLGGGNDERE 313
Query: 147 RTMLELLNQLDGV---*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + +I+ R D+LDPALLR GR DRK+
Sbjct: 314 QTLNQLLVEMDGFQDDGNSVIVIAATNRS----DVLDPALLRPGRFDRKV 359
>gi|3426264 (AF037269) cell division protein [Mycobacterium smegmatis]
Length = 769
Score = 84.7 bits (206), Expect = 2e-16
Identities = 47/107 (43%), Positives = 69/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIF+DEIDA+G +R G E +
Sbjct: 224 FFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDERE 283
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG R ++ + +P DILDPALLR GR DR+I
Sbjct: 284 QTLNQLLVEMDGFGDRQGVILIAATNRP---DILDPALLRPGRFDRQI 328
>gi|3808101|emb|CAA09935| (AJ012165) chloroplast protease [Capsicum annuum]
Length = 693
Score = 84.7 bits (206), Expect = 2e-16
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+F+DEIDA+G +R G+ E +
Sbjct: 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG II+ R DILD ALLR GR DR++
Sbjct: 352 QTLNQLLTEMDGFEGNTGIIVVAATNR----ADILDSALLRPGRFDRQV 396
>gi|4325041|gb|AAD17230| (AF117339) FtsH-like protein Pftf precursor [Nicotiana tabacum]
Length = 693
Score = 84.7 bits (206), Expect = 2e-16
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+F+DEIDA+G +R G+ E +
Sbjct: 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG II+ R DILD ALLR GR DR++
Sbjct: 352 QTLNQLLTEMDGFEGNTGIIVVAATNR----ADILDSALLRPGRFDRQV 396
>gi|3323067 (AE001247) cell division protein (ftsH) [Treponema pallidum]
Length = 609
Score = 84.3 bits (205), Expect = 3e-16
Identities = 46/107 (42%), Positives = 72/107 (66%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +++G ++M++G GA VRD+FK A+E P IIFIDE+DAIG R ++ + D E +
Sbjct: 202 FFRISGSDFIEMFVGIGASRVRDLFKQAREKAPGIIFIDELDAIGKSRLNAIHSND-ERE 260
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + ++ L +P D+LDPALLR GR DR++
Sbjct: 261 QTLNQLLVEMDGFDNTTGLILLAATNRP---DVLDPALLRPGRFDRQV 305
>gi|3201633 (AC004669) putative cell division protein [Arabidopsis thaliana]
Length = 695
Score = 84.3 bits (205), Expect = 3e-16
Identities = 46/107 (42%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P I+F+DEIDA+G +R G+ E +
Sbjct: 288 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 347
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG +I+ R DILD ALLR GR DR++
Sbjct: 348 QTLNQLLTEMDGFEGNTGVIVVAATNR----ADILDSALLRPGRFDRQV 392
>gi|2492510|sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|1001602|dbj|BAA10230|
(D64000) cell division protein FtsH [Synechocystis sp.]
Length = 627
Score = 84.3 bits (205), Expect = 3e-16
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P +IFIDEIDA+G +R G+ E +
Sbjct: 233 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDERE 292
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG I+ + +P D+LD AL+R GR DR++
Sbjct: 293 QTLNQLLTEMDGFEGNTGIIIIAATNRP---DVLDSALMRPGRFDRQV 337
>gi|3122116|sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2660540|emb|CAA05102|
(AJ001932) cell cycle protein [Helicobacter felis]
Length = 638
Score = 83.9 bits (204), Expect = 3e-16
Identities = 48/107 (44%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEV 151
F + G ++M++G GA VRD+F +AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 237 FFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDAIGKSRAAGGMISGNDER 296
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S ++ L +P +ILDPALLR GR DR++
Sbjct: 297 EQTLNQLLAEMDGFGSENAPVIVLAATNRP---EILDPALLRPGRFDRQV 343
>gi|2492511|sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 2 >gi|1652282|dbj|BAA17205|
(D90904) cell division protein FtsH [Synechocystis sp.]
Length = 665
Score = 83.5 bits (203), Expect = 4e-16
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AKE P ++FIDEIDA+G +R G+ E +
Sbjct: 272 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDERE 331
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG I+ + +P D+LD ALLR GR DR++
Sbjct: 332 QTLNQLLTEMDGFEGNSGIIVIAATNRP---DVLDLALLRPGRFDRQV 376
>gi|1706926|sp|P51327|FTSH_PORPU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2147534|pir||S73248
hypothetical protein 25 - Porphyra purpurea chloroplast
>gi|1276793 (U38804) hypothetical chloroplast ORF 25.
[Porphyra purpurea]
Length = 628
Score = 83.1 bits (202), Expect = 6e-16
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G + V+M++G GA VRD+FK AK+ P I+FIDEIDA+G +R G+ E +
Sbjct: 234 FFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDERE 293
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + DILD ALLR GR DR++
Sbjct: 294 QTLNQLLTEMDGFEGN--TGVIVIAATNRADILDSALLRPGRFDRQV 338
>gi|3820564 (AF080002) ATP-dependent zinc metallopeptidase FtsH [Heliobacillus
mobilis]
Length = 601
Score = 83.1 bits (202), Expect = 6e-16
Identities = 47/107 (43%), Positives = 69/107 (63%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P I+FIDEIDA+G +R G E +
Sbjct: 219 FFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGGHDERE 278
Query: 147 RTMLELLNQLDGV*SRI-IMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + I+ + +P DILDPALLR GR DR+I
Sbjct: 279 QTLNQLLVEMDGFSANEGIIIIAATNRP---DILDPALLRPGRFDRQI 323
>gi|1706925|sp|P49825|FTSH_ODOSI CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1185191|emb|CAA91674|
(Z67753) ORF 644 [Odontella sinensis]
Length = 644
Score = 82.7 bits (201), Expect = 8e-16
Identities = 46/107 (42%), Positives = 66/107 (60%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +AG + V+M+IG GA VRD+FK A E P I+FIDEIDA+G +R G+ E +
Sbjct: 247 FFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDERE 306
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + + DILD ALLR GR DR++
Sbjct: 307 QTLNQLLTEMDGF--KENKGVIVVGATNRADILDAALLRPGRFDRQV 351
>gi|3122117|sp|P94304|FTSH_BACFI CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1813473 (U61844) cell
division protein [Bacillus firmus]
Length = 679
Score = 82.7 bits (201), Expect = 8e-16
Identities = 46/108 (42%), Positives = 67/108 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G +R G E +
Sbjct: 227 FFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDERE 286
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+T+ +LL ++DG + + + DILDPALLR GR DR+I+
Sbjct: 287 QTLNQLLVEMDGFSAN--EGIIIIAATNRADILDPALLRPGRFDRQIQ 332
>gi|4154882 (AE001471) ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori
J99]
Length = 632
Score = 82.7 bits (201), Expect = 8e-16
Identities = 47/107 (43%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDR-TGDHEV 151
F + G ++M++G GA VRD+F+ AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 231 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGMISGNDER 290
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S ++ L +P +ILDPAL+R GR DR++
Sbjct: 291 EQTLNQLLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFDRQV 337
>gi|2983448 (AE000714) cell division protein FtsH [Aquifex aeolicus]
Length = 634
Score = 82.3 bits (200), Expect = 1e-15
Identities = 50/107 (46%), Positives = 70/107 (64%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDH-EV 151
F+ ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G R G H E
Sbjct: 216 FISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDAVGRARGAIPVGGGHDER 275
Query: 150 QRTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S I+ + +P DILDPALLR GR DR+I
Sbjct: 276 EQTLNQLLVEMDGFDTSDGIIVIAATNRP---DILDPALLRPGRFDRQI 321
>gi|2492508|sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2314219|gb|AAD08115.1|
(AE000614) cell division protein (ftsH) [Helicobacter
pylori 26695]
Length = 632
Score = 81.9 bits (199), Expect = 1e-15
Identities = 47/107 (43%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSD-RTGDHEV 151
F + G ++M++G GA VRD+F+ AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 231 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDER 290
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ +LL ++DG S ++ L +P +ILDPAL+R GR DR++
Sbjct: 291 EQTLNQLLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFDRQV 337
>gi|120570|sp|P28691|FTSH_ECOLI CELL DIVISION PROTEIN FTSH >gi|421034|pir||S35109 ftsH protein -
Escherichia coli >gi|146028 (M83138) ftsH [Escherichia
coli] >gi|606116 (U18997) CG Site No. 735 [Escherichia
coli] >gi|1789568 (AE000398) degrades sigma32, integral
membrane peptidase, cell division protein [Escherichia
coli]
Length = 644
Score = 81.5 bits (198), Expect = 2e-15
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G +R G E +
Sbjct: 213 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 272
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ ++L ++DG + I+ + +P D+LDPALLR GR DR++
Sbjct: 273 QTLNQMLVEMDGFEGNEGIIVIAATNRP---DVLDPALLRPGRFDRQV 317
>gi|3128469 (AF061748) cell division protein FtsH [Streptococcus pneumoniae]
Length = 498
Score = 81.5 bits (198), Expect = 2e-15
Identities = 47/107 (43%), Positives = 68/107 (62%), Gaps = 2/107 (1%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VR +F+ AK+ P+IIFIDEIDA+G +R G+ E +
Sbjct: 103 FFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDERE 162
Query: 147 RTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG II+ R D+LDPALLR GR DRK+
Sbjct: 163 QTLNQLLIEMDGFEGNEGIIVIAATNRS----DVLDPALLRPGRFDRKV 207
>gi|746401 (U01376) ATP-binding protein [Escherichia coli]
Length = 647
Score = 81.5 bits (198), Expect = 2e-15
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P IIFIDEIDA+G +R G E +
Sbjct: 216 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDERE 275
Query: 147 RTMLELLNQLDGV-*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ ++L ++DG + I+ + +P D+LDPALLR GR DR++
Sbjct: 276 QTLNQMLVEMDGFEGNEGIIVIAATNRP---DVLDPALLRPGRFDRQV 320
>gi|585159|sp|P37476|FTSH_BACSU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2126904|pir||S66099 cell
division protein FtsH - Bacillus subtilis
>gi|467458|dbj|BAA05304| (D26185) cell division protein
[Bacillus subtilis] >gi|2632336|emb|CAB11845| (Z99104)
cell-division protein and general stress protein (class
III heat-shock) [Bacillus subtilis]
Length = 637
Score = 81.1 bits (197), Expect = 2e-15
Identities = 45/107 (42%), Positives = 66/107 (61%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F ++G V+M++G GA VRD+F+ AK+ P +IFIDEIDA+G +R G E +
Sbjct: 222 FFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDERE 281
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
+T+ +LL ++DG + + + DILDPALLR GR DR+I
Sbjct: 282 QTLNQLLVEMDGFSAN--EGIIIIAATNRADILDPALLRPGRFDRQI 326
>gi|1168858|sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH protein - Halobacterium
salinarium >gi|517390|emb|CAA56097| (X79560) cdcH
[Halobacterium salinarum]
Length = 742
Score = 80.4 bits (195), Expect = 4e-15
Identities = 44/108 (40%), Positives = 69/108 (63%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F +AGP+++ Y G+ + +R++F+ AK+ PSIIFIDE+D+I KR D TG+ E +
Sbjct: 251 FFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDV--TGEVE-R 307
Query: 147 RTMLELLNQLDGV*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +DG+ R ++ + +D +DPAL R GR DR+IE
Sbjct: 308 RVVAQLLTMMDGLEGR--GQVIVIAATNRVDAVDPALRRPGRFDREIE 353
Score = 74.1 bits (179), Expect = 3e-13
Identities = 37/108 (34%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148
F+ + GPQL+ ++G+ + +R F+ A++ P++IF DE+D++ R + G++ +
Sbjct: 524 FISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTG--GNNVSE 581
Query: 147 RTMLELLNQLDGV*S-RIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
R + +LL +LDG+ +M + +P DI+DPAL+RSGR DR ++
Sbjct: 582 RVVNQLLTELDGLEEMEEVMVIAATNRP---DIIDPALIRSGRFDRLVQ 627
>gi|2199518 (U97567) FtsH [Helicobacter pylori]
Length = 632
Score = 80.4 bits (195), Expect = 4e-15
Identities = 46/107 (42%), Positives = 70/107 (64%), Gaps = 3/107 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSD-RTGDHEV 151
F + G ++M++G GA VRD+F+ AK+ PSIIFIDEIDAIG R+ +G+ E
Sbjct: 231 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDER 290
Query: 150 QRTMLELLNQLDGV*SR--IIMKLRL*RQPTXIDILDPALLRSGRIDRKI 7
++T+ + L ++DG S ++ L +P +ILDPAL+R GR DR++
Sbjct: 291 EQTLNQFLAEMDGFGSENAPVIVLAATNRP---EILDPALMRPGRFDRQV 337
>gi|541748|emb|CAA54091| (X76643) Afg3p [Saccharomyces cerevisiae]
Length = 761
Score = 80.4 bits (195), Expect = 4e-15
Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTG--DHE 154
FL ++G + V+M++G GA VRD+F A+ PSIIFIDEIDAIG +R G + E
Sbjct: 349 FLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDE 408
Query: 153 VQRTMLELLNQLDG-V*SRIIMKLRL*RQPTXIDILDPALLRSGRIDRKIE 4
+RT+ +LL ++DG S ++ L +P D+LD AL+R GR DR I+
Sbjct: 409 RERTLNQLLVEMDGFTTSDQVVVLAGTNRP---DVLDNALMRPGRFDRHIQ 456
>gi|2062173 (AC001645) cell division protein FtsH isolog [Arabidopsis thaliana]
Length = 983
Score = 80.4 bits (195), Expect = 4e-15
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 327 FLKLAGPQLVQMYIGDGARLVRDVFKLAKEXKPSIIFIDEIDAIGTKRSDSDRTGDHEVQ 148